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PDB: 104 件

5WT4
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L-Cysteine-PLP intermediate of NifS from Helicobacter pylori
分子名称: Cysteine desulfurase IscS, ISOPROPYL ALCOHOL, N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-CYSTEINE
著者Fujishiro, T, Nakamura, R, Takahashi, T.
登録日2016-12-09
公開日2017-12-13
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.92 Å)
主引用文献Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes.
Febs J., 2019
4YT8
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BU of 4yt8 by Molmil
SeMet-labelled HmdII from Methanocaldococcus jannaschii
分子名称: H(2)-forming methylenetetrahydromethanopterin dehydrogenase-related protein MJ1338, TRIETHYLENE GLYCOL
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2015-03-17
公開日2015-07-01
最終更新日2015-09-09
実験手法X-RAY DIFFRACTION (1.902 Å)
主引用文献Towards a functional identification of catalytically inactive [Fe]-hydrogenase paralogs.
Febs J., 282, 2015
4YT4
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BU of 4yt4 by Molmil
Iron guanylylpyridinol (FeGP) cofactor-reconstituted HmdII from Methanocaldococcus jannaschii
分子名称: H(2)-forming methylenetetrahydromethanopterin dehydrogenase-related protein MJ1338, iron-guanylyl pyridinol cofactor
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2015-03-17
公開日2015-07-01
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Towards a functional identification of catalytically inactive [Fe]-hydrogenase paralogs.
Febs J., 282, 2015
4YT5
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BU of 4yt5 by Molmil
HmdII from Methanocaldococcus jannaschii with bound methylene-tetrahydromethanopterin
分子名称: 5,10-DIMETHYLENE TETRAHYDROMETHANOPTERIN, H(2)-forming methylenetetrahydromethanopterin dehydrogenase-related protein MJ1338, TRIETHYLENE GLYCOL
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2015-03-17
公開日2015-07-01
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Towards a functional identification of catalytically inactive [Fe]-hydrogenase paralogs.
Febs J., 282, 2015
4YTE
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BU of 4yte by Molmil
N-terminal domain of HmdIII from Methanocaldococcus jannaschii
分子名称: H(2)-forming methylenetetrahydromethanopterin dehydrogenase-related protein MJ0715
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2015-03-17
公開日2016-03-23
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献N-terminal domain of HmdIII from Methanocaldococcus jannaschii
to be published
5WT2
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BU of 5wt2 by Molmil
NifS from Helicobacter pylori
分子名称: CHLORIDE ION, Cysteine desulfurase IscS, ISOPROPYL ALCOHOL, ...
著者Fujishiro, T, Takahashi, Y.
登録日2016-12-09
公開日2017-12-13
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.301 Å)
主引用文献Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes.
Febs J., 2019
6JZW
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BU of 6jzw by Molmil
Crystal structure of SufU from Bacillus subtilis with Cys persulfurated
分子名称: ZINC ION, Zinc-dependent sulfurtransferase SufU
著者Fujishiro, T, Takahashi, Y.
登録日2019-05-04
公開日2020-05-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.64 Å)
主引用文献Zinc-persulfide complex for sulfur mobilization by SufU in SUF-like machinery for Fe-S cluster biosynthesis
to be published
6JZV
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BU of 6jzv by Molmil
Crystal structure of SufU from Bacillus subtilis
分子名称: ZINC ION, Zinc-dependent sulfurtransferase SufU
著者Fujishiro, T, Takahashi, Y.
登録日2019-05-04
公開日2020-05-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Zinc-persulfide complex for sulfur mobilization by SufU in SUF-like machinery for Fe-S cluster biosynthesis
to be published
7E0L
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BU of 7e0l by Molmil
Class III hybrid cluster protein (HCP) from Methanothermobacter marburgensis
分子名称: FE (III) ION, FE-S-O HYBRID CLUSTER, Hydroxylamine reductase, ...
著者Fujishiro, T.
登録日2021-01-28
公開日2022-02-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.82 Å)
主引用文献Class III hybrid cluster protein homodimeric architecture shows evolutionary relationship with Ni, Fe-carbon monoxide dehydrogenases
Nat Commun, 2023
5D4V
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BU of 5d4v by Molmil
HcgC with SAH and a guanylylpyridinol (GP) derivative
分子名称: 5'-O-[(R)-[(3,6-dimethyl-2-oxo-1,2-dihydropyridin-4-yl)oxy](hydroxy)phosphoryl]guanosine, S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION, ...
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2015-08-09
公開日2016-07-20
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Identification of HcgC as a SAM-Dependent Pyridinol Methyltransferase in [Fe]-Hydrogenase Cofactor Biosynthesis.
Angew.Chem.Int.Ed.Engl., 55, 2016
5D4U
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BU of 5d4u by Molmil
SAM-bound HcgC from Methanocaldococcus jannaschii
分子名称: S-ADENOSYLMETHIONINE, SULFATE ION, Uncharacterized protein MJ0489
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2015-08-09
公開日2016-07-20
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Identification of HcgC as a SAM-Dependent Pyridinol Methyltransferase in [Fe]-Hydrogenase Cofactor Biosynthesis.
Angew.Chem.Int.Ed.Engl., 55, 2016
5D4T
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BU of 5d4t by Molmil
SeMet-labelled HcgC from Methanocaldococcus jannaschii in space group P212121
分子名称: Uncharacterized protein MJ0489
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2015-08-09
公開日2016-07-20
最終更新日2016-08-10
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Identification of HcgC as a SAM-Dependent Pyridinol Methyltransferase in [Fe]-Hydrogenase Cofactor Biosynthesis.
Angew.Chem.Int.Ed.Engl., 55, 2016
5D5T
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BU of 5d5t by Molmil
SeMet-labelled HcgC from Methanocaldococcus jannaschii in P1 space group
分子名称: Uncharacterized protein MJ0489
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2015-08-11
公開日2016-07-20
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Identification of HcgC as a SAM-Dependent Pyridinol Methyltransferase in [Fe]-Hydrogenase Cofactor Biosynthesis.
Angew.Chem.Int.Ed.Engl., 55, 2016
5D5P
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BU of 5d5p by Molmil
HcgB from Methanococcus maripaludis
分子名称: HcgB
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2015-08-11
公開日2016-10-26
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Towards artificial methanogenesis: biosynthesis of the [Fe]-hydrogenase cofactor and characterization of the semi-synthetic hydrogenase.
Faraday Discuss., 198, 2017
5D5O
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BU of 5d5o by Molmil
HcgC from Methanocaldococcus jannaschii
分子名称: SULFATE ION, Uncharacterized protein MJ0489
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2015-08-11
公開日2016-07-20
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Identification of HcgC as a SAM-Dependent Pyridinol Methyltransferase in [Fe]-Hydrogenase Cofactor Biosynthesis.
Angew.Chem.Int.Ed.Engl., 55, 2016
5D5Q
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BU of 5d5q by Molmil
HcgB from Methanocaldococcus jannaschii with the pyridinol derived from FeGP cofactor of [Fe]-hydrogenase
分子名称: (4,6-dihydroxy-3,5-dimethylpyridin-2-yl)acetic acid, Uncharacterized protein MJ0488, Guanylyltransferase
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2015-08-11
公開日2016-10-26
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Towards artificial methanogenesis: biosynthesis of the [Fe]-hydrogenase cofactor and characterization of the semi-synthetic hydrogenase.
Faraday Discuss., 198, 2017
7WSX
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BU of 7wsx by Molmil
Class III hybrid cluster protein (HCP) C67Y variant from Methanothermobacter marburgensis
分子名称: FE-S-O HYBRID CLUSTER, Hydroxylamine reductase
著者Fujishiro, T.
登録日2022-02-02
公開日2023-02-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Class III hybrid cluster protein homodimeric architecture shows evolutionary relationship with Ni, Fe-carbon monoxide dehydrogenases.
Nat Commun, 14, 2023
3AWM
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BU of 3awm by Molmil
Cytochrome P450SP alpha (CYP152B1) wild-type with palmitic acid
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, Fatty acid alpha-hydroxylase, PALMITIC ACID, ...
著者Fujishiro, T, Shoji, O, Nagano, S, Sugimoto, H, Shiro, Y, Watanabe, Y.
登録日2011-03-25
公開日2011-06-29
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structure of H2O2-dependent cytochrome P450SPalpha with its bound fatty acid substrate: insight into the regioselective hydroxylation of fatty acids at the alpha position
J.Biol.Chem., 286, 2011
3AWP
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BU of 3awp by Molmil
Cytochrome P450SP alpha (CYP152B1) mutant F288G
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, Fatty acid alpha-hydroxylase, PALMITIC ACID, ...
著者Fujishiro, T, Shoji, O, Nagano, S, Sugimoto, H, Shiro, Y, Watanabe, Y.
登録日2011-03-25
公開日2011-06-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of H2O2-dependent cytochrome P450SPalpha with its bound fatty acid substrate: insight into the regioselective hydroxylation of fatty acids at the alpha position.
J.Biol.Chem., 286, 2011
3AWQ
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BU of 3awq by Molmil
Cytochrome P450SP alpha (CYP152B1) mutant L78F
分子名称: Fatty acid alpha-hydroxylase, PALMITIC ACID, PROTOPORPHYRIN IX CONTAINING FE
著者Fujishiro, T, Shoji, O, Nagano, S, Sugimoto, H, Shiro, Y, Watanabe, Y.
登録日2011-03-25
公開日2011-06-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of H2O2-dependent cytochrome P450SPalpha with its bound fatty acid substrate: insight into the regioselective hydroxylation of fatty acids at the alpha position.
J.Biol.Chem., 286, 2011
4YT2
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BU of 4yt2 by Molmil
Hmd II from Methanocaldococcus jannaschii
分子名称: DI(HYDROXYETHYL)ETHER, H(2)-forming methylenetetrahydromethanopterin dehydrogenase-related protein MJ1338, TRIETHYLENE GLYCOL
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2015-03-17
公開日2015-07-01
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Towards a functional identification of catalytically inactive [Fe]-hydrogenase paralogs.
Febs J., 282, 2015
7DE4
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BU of 7de4 by Molmil
Hybrid cluster protein (HCP) from Escherichia coli
分子名称: FE-S-O HYBRID CLUSTER, Hydroxylamine reductase, IRON/SULFUR CLUSTER
著者Fujishiro, T, Ooi, M, Takaoka, K, Takahashi, Y.
登録日2020-11-02
公開日2021-06-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.61 Å)
主引用文献Crystal structure of Escherichia coli class II hybrid cluster protein, HCP, reveals a [4Fe-4S] cluster at the N-terminal protrusion.
Febs J., 288, 2021
5XT6
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BU of 5xt6 by Molmil
A sulfur-transferring catalytic intermediate of SufS-SufU complex from Bacillus subtilis
分子名称: 2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID, Cysteine desulfurase SufS, ZINC ION, ...
著者Fujishiro, T, Kunichika, K, Takahashi, Y.
登録日2017-06-17
公開日2017-12-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Zinc-Ligand Swapping Mediated Complex Formation and Sulfur Transfer between SufS and SufU for Iron-Sulfur Cluster Biogenesis in Bacillus subtilis
J. Am. Chem. Soc., 139, 2017
5XT5
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BU of 5xt5 by Molmil
SufS-SufU complex from Bacillus subtilis
分子名称: Cysteine desulfurase SufS, PYRIDOXAL-5'-PHOSPHATE, ZINC ION, ...
著者Fujishiro, T, Takahashi, Y.
登録日2017-06-17
公開日2017-12-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.34 Å)
主引用文献Zinc-Ligand Swapping Mediated Complex Formation and Sulfur Transfer between SufS and SufU for Iron-Sulfur Cluster Biogenesis in Bacillus subtilis
J. Am. Chem. Soc., 139, 2017
6M28
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BU of 6m28 by Molmil
Sirohydrochlorin nickelochelatase CfbA in complex with Co2+
分子名称: COBALT (II) ION, Sirohydrochlorin cobaltochelatase
著者Fujishiro, T.
登録日2020-02-26
公開日2021-01-13
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献The nickel-sirohydrochlorin formation mechanism of the ancestral class II chelatase CfbA in coenzyme F430 biosynthesis.
Chem Sci, 12, 2021

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件を2024-05-15に公開中

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