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PDB: 219 results

3WSF
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BU of 3wsf by Molmil
Oxidized HcgD from Methanocaldococcus jannaschii with citrate
Descriptor: CITRIC ACID, FE (III) ION, Putative GTP cyclohydrolase 1 type 2
Authors:Fujishiro, T, Ermler, U, Shima, S.
Deposit date:2014-03-13
Release date:2014-08-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:A possible iron delivery function of the dinuclear iron center of HcgD in [Fe]-hydrogenase cofactor biosynthesis
Febs Lett., 588, 2014
3WVB
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BU of 3wvb by Molmil
HcgF from Methanocaldococcus jannaschii
Descriptor: UPF0254 protein MJ1251
Authors:Fujishiro, T, Ermler, U, Shima, S.
Deposit date:2014-05-16
Release date:2015-04-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Protein-pyridinol thioester precursor for biosynthesis of the organometallic acyl-iron ligand in [Fe]-hydrogenase cofactor
Nat Commun, 6, 2015
3WVC
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BU of 3wvc by Molmil
Guanylylpyridinol (GP)-bound HcgF from Methanocaldococcus jannaschii
Descriptor: 5'-O-[(R)-hydroxy{[2-hydroxy-3,5-dimethyl-6-(2-oxo-2-sulfanylethyl)pyridin-4-yl]oxy}phosphoryl]guanosine, 5'-O-[(S)-{[2-(carboxymethyl)-6-hydroxy-3,5-dimethylpyridin-4-yl]oxy}(hydroxy)phosphoryl]guanosine, SULFATE ION, ...
Authors:Fujishiro, T, Ermler, U, Shima, S.
Deposit date:2014-05-16
Release date:2015-04-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Protein-pyridinol thioester precursor for biosynthesis of the organometallic acyl-iron ligand in [Fe]-hydrogenase cofactor
Nat Commun, 6, 2015
3WSH
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BU of 3wsh by Molmil
EDTA-treated, oxidized HcgD from Methanocaldococcus jannaschii
Descriptor: FE (III) ION, Putative GTP cyclohydrolase 1 type 2, SULFATE ION
Authors:Fujishiro, T, Ermler, U, Shima, S.
Deposit date:2014-03-13
Release date:2014-08-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A possible iron delivery function of the dinuclear iron center of HcgD in [Fe]-hydrogenase cofactor biosynthesis
Febs Lett., 588, 2014
3WVA
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BU of 3wva by Molmil
SeMet-labelled HcgF from Methanocaldococcus jannaschii
Descriptor: UPF0254 protein MJ1251
Authors:Fujishiro, T, Ermler, U, Shima, S.
Deposit date:2014-05-16
Release date:2015-04-29
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Protein-pyridinol thioester precursor for biosynthesis of the organometallic acyl-iron ligand in [Fe]-hydrogenase cofactor
Nat Commun, 6, 2015
3WSI
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BU of 3wsi by Molmil
EDTA-treated, reduced HcgD from Methanocaldococcus jannaschii
Descriptor: FE (II) ION, PHOSPHATE ION, Putative GTP cyclohydrolase 1 type 2
Authors:Fujishiro, T, Ermler, U, Shima, S.
Deposit date:2014-03-13
Release date:2014-08-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A possible iron delivery function of the dinuclear iron center of HcgD in [Fe]-hydrogenase cofactor biosynthesis
Febs Lett., 588, 2014
4YT4
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BU of 4yt4 by Molmil
Iron guanylylpyridinol (FeGP) cofactor-reconstituted HmdII from Methanocaldococcus jannaschii
Descriptor: H(2)-forming methylenetetrahydromethanopterin dehydrogenase-related protein MJ1338, iron-guanylyl pyridinol cofactor
Authors:Fujishiro, T, Ermler, U, Shima, S.
Deposit date:2015-03-17
Release date:2015-07-01
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Towards a functional identification of catalytically inactive [Fe]-hydrogenase paralogs.
Febs J., 282, 2015
4YT8
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BU of 4yt8 by Molmil
SeMet-labelled HmdII from Methanocaldococcus jannaschii
Descriptor: H(2)-forming methylenetetrahydromethanopterin dehydrogenase-related protein MJ1338, TRIETHYLENE GLYCOL
Authors:Fujishiro, T, Ermler, U, Shima, S.
Deposit date:2015-03-17
Release date:2015-07-01
Last modified:2015-09-09
Method:X-RAY DIFFRACTION (1.902 Å)
Cite:Towards a functional identification of catalytically inactive [Fe]-hydrogenase paralogs.
Febs J., 282, 2015
4YT5
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BU of 4yt5 by Molmil
HmdII from Methanocaldococcus jannaschii with bound methylene-tetrahydromethanopterin
Descriptor: 5,10-DIMETHYLENE TETRAHYDROMETHANOPTERIN, H(2)-forming methylenetetrahydromethanopterin dehydrogenase-related protein MJ1338, TRIETHYLENE GLYCOL
Authors:Fujishiro, T, Ermler, U, Shima, S.
Deposit date:2015-03-17
Release date:2015-07-01
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Towards a functional identification of catalytically inactive [Fe]-hydrogenase paralogs.
Febs J., 282, 2015
4YTE
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BU of 4yte by Molmil
N-terminal domain of HmdIII from Methanocaldococcus jannaschii
Descriptor: H(2)-forming methylenetetrahydromethanopterin dehydrogenase-related protein MJ0715
Authors:Fujishiro, T, Ermler, U, Shima, S.
Deposit date:2015-03-17
Release date:2016-03-23
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:N-terminal domain of HmdIII from Methanocaldococcus jannaschii
to be published
4YT2
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BU of 4yt2 by Molmil
Hmd II from Methanocaldococcus jannaschii
Descriptor: DI(HYDROXYETHYL)ETHER, H(2)-forming methylenetetrahydromethanopterin dehydrogenase-related protein MJ1338, TRIETHYLENE GLYCOL
Authors:Fujishiro, T, Ermler, U, Shima, S.
Deposit date:2015-03-17
Release date:2015-07-01
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Towards a functional identification of catalytically inactive [Fe]-hydrogenase paralogs.
Febs J., 282, 2015
4Z3W
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BU of 4z3w by Molmil
Active site complex BamBC of Benzoyl Coenzyme A reductase in complex with 1,5 Dienoyl-CoA
Descriptor: 1,5 Dienoyl-CoA, Benzoyl-CoA reductase, putative, ...
Authors:Weinert, T, Kung, J, Weidenweber, S, Huwiler, S, Boll, M, Ermler, U.
Deposit date:2015-04-01
Release date:2015-06-24
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.208 Å)
Cite:Structural basis of enzymatic benzene ring reduction.
Nat.Chem.Biol., 11, 2015
4Z3X
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BU of 4z3x by Molmil
Active site complex BamBC of Benzoyl Coenzyme A reductase in complex with 1-Monoenoyl-CoA
Descriptor: 1,5 Dienoyl-CoA, Benzoyl-CoA reductase, putative, ...
Authors:Weinert, T, Kung, J.W, Weidenweber, S, Huwiler, S.G, Boll, M, Ermler, U.
Deposit date:2015-04-01
Release date:2015-06-24
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural basis of enzymatic benzene ring reduction.
Nat.Chem.Biol., 11, 2015
4Z40
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BU of 4z40 by Molmil
Active site complex BamBC of Benzoyl Coenzyme A reductase as isolated
Descriptor: Benzoyl-CoA reductase, putative, IRON/SULFUR CLUSTER, ...
Authors:Weinert, T, Kung, J.W, Weidenweber, S, Huwiler, S.G, Boll, M, Ermler, U.
Deposit date:2015-04-01
Release date:2015-06-24
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis of enzymatic benzene ring reduction.
Nat.Chem.Biol., 11, 2015
4Z3Z
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BU of 4z3z by Molmil
Active site complex BamBC of Benzoyl Coenzyme A reductase in complex with Zinc
Descriptor: Benzoyl-CoA reductase, putative, IRON/SULFUR CLUSTER, ...
Authors:Weinert, T, Kung, J.W, Weidenweber, S, Huwiler, S.G, Boll, M, Ermler, U.
Deposit date:2015-04-01
Release date:2015-06-24
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.666 Å)
Cite:Structural basis of enzymatic benzene ring reduction.
Nat.Chem.Biol., 11, 2015
4Z3Y
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BU of 4z3y by Molmil
Active site complex BamBC of Benzoyl Coenzyme A reductase in complex with Benzoyl-CoA
Descriptor: Benzoyl-CoA reductase, putative, IRON/SULFUR CLUSTER, ...
Authors:Weinert, T, Kung, J.W, Weidenweber, S, Huwiler, S.G, Boll, M, Ermler, U.
Deposit date:2015-04-01
Release date:2015-07-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.359 Å)
Cite:Structural basis of enzymatic benzene ring reduction.
Nat.Chem.Biol., 11, 2015
5A8K
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BU of 5a8k by Molmil
METHYL-COENZYME M REDUCTASE FROM METHANOTHERMOBACTER WOLFEII AT 1.4 A RESOLUTION
Descriptor: 1-THIOETHANESULFONIC ACID, 2-ETHOXYETHANOL, CALCIUM ION, ...
Authors:Wagner, T, Ermler, U.
Deposit date:2015-07-16
Release date:2016-08-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Didehydroaspartate Modification in Methyl-Coenzyme M Reductase Catalyzing Methane Formation.
Angew.Chem.Int.Ed.Engl., 55, 2016
5A0Y
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BU of 5a0y by Molmil
METHYL-COENZYME M REDUCTASE FROM METHANOTHERMOBACTER MARBURGENSIS AT 1.1 A RESOLUTION
Descriptor: 1-THIOETHANESULFONIC ACID, CHLORIDE ION, Coenzyme B, ...
Authors:Wagner, T, Ermler, U.
Deposit date:2015-04-24
Release date:2016-05-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Didehydroaspartate Modification in Methyl-Coenzyme M Reductase Catalyzing Methane Formation.
Angew.Chem.Int.Ed.Engl., 55, 2016
5A8W
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BU of 5a8w by Molmil
METHYL-COENZYME M REDUCTASE II FROM METHANOTHERMOBACTER WOLFEII AT 1. 8 A RESOLUTION
Descriptor: 1-THIOETHANESULFONIC ACID, ACETATE ION, Coenzyme B, ...
Authors:Wagner, T, Ermler, U.
Deposit date:2015-07-17
Release date:2016-08-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Didehydroaspartate Modification in Methyl-Coenzyme M Reductase Catalyzing Methane Formation.
Angew.Chem.Int.Ed.Engl., 55, 2016
5A8R
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BU of 5a8r by Molmil
METHYL-COENZYME M REDUCTASE II FROM METHANOTHERMOBACTER MARBURGENSIS AT 2.15 A RESOLUTION
Descriptor: 1-THIOETHANESULFONIC ACID, Coenzyme B, FACTOR 430, ...
Authors:Wagner, T, Ermler, U.
Deposit date:2015-07-16
Release date:2016-08-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Didehydroaspartate Modification in Methyl-Coenzyme M Reductase Catalyzing Methane Formation.
Angew.Chem.Int.Ed.Engl., 55, 2016
5D4T
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BU of 5d4t by Molmil
SeMet-labelled HcgC from Methanocaldococcus jannaschii in space group P212121
Descriptor: Uncharacterized protein MJ0489
Authors:Fujishiro, T, Ermler, U, Shima, S.
Deposit date:2015-08-09
Release date:2016-07-20
Last modified:2016-08-10
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Identification of HcgC as a SAM-Dependent Pyridinol Methyltransferase in [Fe]-Hydrogenase Cofactor Biosynthesis.
Angew.Chem.Int.Ed.Engl., 55, 2016
5D4V
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BU of 5d4v by Molmil
HcgC with SAH and a guanylylpyridinol (GP) derivative
Descriptor: 5'-O-[(R)-[(3,6-dimethyl-2-oxo-1,2-dihydropyridin-4-yl)oxy](hydroxy)phosphoryl]guanosine, S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION, ...
Authors:Fujishiro, T, Ermler, U, Shima, S.
Deposit date:2015-08-09
Release date:2016-07-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Identification of HcgC as a SAM-Dependent Pyridinol Methyltransferase in [Fe]-Hydrogenase Cofactor Biosynthesis.
Angew.Chem.Int.Ed.Engl., 55, 2016
5D5T
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BU of 5d5t by Molmil
SeMet-labelled HcgC from Methanocaldococcus jannaschii in P1 space group
Descriptor: Uncharacterized protein MJ0489
Authors:Fujishiro, T, Ermler, U, Shima, S.
Deposit date:2015-08-11
Release date:2016-07-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Identification of HcgC as a SAM-Dependent Pyridinol Methyltransferase in [Fe]-Hydrogenase Cofactor Biosynthesis.
Angew.Chem.Int.Ed.Engl., 55, 2016
5D5P
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BU of 5d5p by Molmil
HcgB from Methanococcus maripaludis
Descriptor: HcgB
Authors:Fujishiro, T, Ermler, U, Shima, S.
Deposit date:2015-08-11
Release date:2016-10-26
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Towards artificial methanogenesis: biosynthesis of the [Fe]-hydrogenase cofactor and characterization of the semi-synthetic hydrogenase.
Faraday Discuss., 198, 2017
5D4U
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BU of 5d4u by Molmil
SAM-bound HcgC from Methanocaldococcus jannaschii
Descriptor: S-ADENOSYLMETHIONINE, SULFATE ION, Uncharacterized protein MJ0489
Authors:Fujishiro, T, Ermler, U, Shima, S.
Deposit date:2015-08-09
Release date:2016-07-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Identification of HcgC as a SAM-Dependent Pyridinol Methyltransferase in [Fe]-Hydrogenase Cofactor Biosynthesis.
Angew.Chem.Int.Ed.Engl., 55, 2016

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數據於2024-05-29公開中

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