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PDB: 67 results
8BNA
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BU of 8bna by Molmil
BINDING OF HOECHST 33258 TO THE MINOR GROOVE OF B-DNA
Descriptor: 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION
Authors:Pjura, P.E, Grzeskowiak, K, Dickerson, R.E.
Deposit date:1986-08-29
Release date:1987-01-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Binding of Hoechst 33258 to the minor groove of B-DNA.
J.Mol.Biol., 197, 1987
3BNA
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BU of 3bna by Molmil
REVERSIBLE BENDING AND HELIX GEOMETRY IN A B-DNA DODECAMER: CGCGAATTBRCGCG
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3')
Authors:Kopka, M.L, Fratini, A.V, Dickerson, R.E.
Deposit date:1982-02-16
Release date:1982-04-15
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3 Å)
Cite:Reversible bending and helix geometry in a B-DNA dodecamer: CGCGAATTBrCGCG.
J.Biol.Chem., 257, 1982
7BNA
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BU of 7bna by Molmil
ANISOTROPIC THERMAL-PARAMETER REFINEMENT OF THE DNA DODECAMER CGCGAATTCGCG BY THE SEGMENTED RIGID-BODY METHOD
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')
Authors:Holbrook, S.R, Dickerson, R.E, Kim, S.-H.
Deposit date:1985-01-07
Release date:1985-07-17
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Anisotropic Thermal-Parameter Refinement of the DNA Dodecamer CGCGAATTCGCG by the Segmented Rigid-Body Method
Acta Crystallogr.,Sect.B, 41, 1985
3FIS
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BU of 3fis by Molmil
THE MOLECULAR STRUCTURE OF WILD-TYPE AND A MUTANT FIS PROTEIN: RELATIONSHIP BETWEEN MUTATIONAL CHANGES AND RECOMBINATIONAL ENHANCER FUNCTION OR DNA BINDING
Descriptor: FACTOR FOR INVERSION STIMULATION (FIS)
Authors:Yuan, H.S, Finkel, S.E, Feng, J-A, Johnson, R.C, Dickerson, R.E.
Deposit date:1991-08-12
Release date:1993-10-31
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The molecular structure of wild-type and a mutant Fis protein: relationship between mutational changes and recombinational enhancer function or DNA binding.
Proc.Natl.Acad.Sci.USA, 88, 1991
5BNA
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BU of 5bna by Molmil
THE PRIMARY MODE OF BINDING OF CISPLATIN TO A B-DNA DODECAMER: C-G-C-G-A-A-T-T-C-G-C-G
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), PLATINUM TRIAMINE ION
Authors:Wing, R.M, Pjura, P, Drew, H.R, Dickerson, R.E.
Deposit date:1983-08-22
Release date:1983-11-02
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The primary mode of binding of cisplatin to a B-DNA dodecamer: C-G-C-G-A-A-T-T-C-G-C-G
EMBO J., 3, 1984
351C
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BU of 351c by Molmil
STRUCTURE OF CYTOCHROME C551 FROM P. AERUGINOSA REFINED AT 1.6 ANGSTROMS RESOLUTION AND COMPARISON OF THE TWO REDOX FORMS
Descriptor: CYTOCHROME C551, PROTOPORPHYRIN IX CONTAINING FE
Authors:Matsuura, Y, Takano, T, Dickerson, R.E.
Deposit date:1981-07-20
Release date:1981-10-02
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of cytochrome c551 from Pseudomonas aeruginosa refined at 1.6 A resolution and comparison of the two redox forms.
J.Mol.Biol., 156, 1982
3DNB
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BU of 3dnb by Molmil
HELIX GEOMETRY, HYDRATION, AND G.A MISMATCH IN A B-DNA DECAMER
Descriptor: DNA (5'-D(*CP*CP*AP*AP*GP*AP*TP*TP*GP*G)-3'), MAGNESIUM ION
Authors:Prive, G.G, Dickerson, R.E.
Deposit date:1988-03-18
Release date:1989-01-09
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure of the B-DNA decamer C-C-A-A-C-G-T-T-G-G and comparison with isomorphous decamers C-C-A-A-G-A-T-T-G-G and C-C-A-G-G-C-C-T-G-G.
J.Mol.Biol., 217, 1991
6BNA
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BU of 6bna by Molmil
BINDING OF AN ANTITUMOR DRUG TO DNA. NETROPSIN AND C-G-C-G-A-A-T-T-BRC-G-C-G
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3'), NETROPSIN
Authors:Kopka, M.L, Yoon, C, Goodsell, D, Pjura, P, Dickerson, R.E.
Deposit date:1984-08-30
Release date:1984-10-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Binding of an antitumor drug to DNA, Netropsin and C-G-C-G-A-A-T-T-BrC-G-C-G.
J.Mol.Biol., 183, 1985
1ANA
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BU of 1ana by Molmil
HELIX GEOMETRY AND HYDRATION IN AN A-DNA TETRAMER. IC-C-G-G
Descriptor: DNA (5'-D(*(C38)P*CP*GP*G)-3')
Authors:Conner, B.N, Yoon, C, Dickerson, J.L, Dickerson, R.E.
Deposit date:1982-06-04
Release date:1982-07-29
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Helix geometry and hydration in an A-DNA tetramer: IC-C-G-G
J.Mol.Biol., 174, 1984
4FIS
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BU of 4fis by Molmil
THE MOLECULAR STRUCTURE OF WILD-TYPE AND A MUTANT FIS PROTEIN: RELATIONSHIP BETWEEN MUTATIONAL CHANGES AND RECOMBINATIONAL ENHANCER FUNCTION OR DNA BINDING
Descriptor: FACTOR FOR INVERSION STIMULATION (FIS)
Authors:Yuan, H.S, Finkel, S.E, Feng, J.-A, Johnson, R.C, Dickerson, R.E.
Deposit date:1991-08-12
Release date:1993-10-31
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The molecular structure of wild-type and a mutant Fis protein: relationship between mutational changes and recombinational enhancer function or DNA binding.
Proc.Natl.Acad.Sci.USA, 88, 1991
4BNA
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BU of 4bna by Molmil
REVERSIBLE BENDING AND HELIX GEOMETRY IN A B-DNA DODECAMER: CGCGAATTBRCGCG
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3')
Authors:Kopka, M.L, Fratini, A.V, Dickerson, R.E.
Deposit date:1982-02-16
Release date:1982-04-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Reversible bending and helix geometry in a B-DNA dodecamer: CGCGAATTBrCGCG.
J.Biol.Chem., 257, 1982
1JKQ
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BU of 1jkq by Molmil
Testing the Water-Mediated HIN Recombinase DNA Recognition by Systematic Mutations
Descriptor: 5'-D(*AP*TP*CP*TP*TP*AP*TP*AP*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*GP*TP*TP*TP*TP*TP*TP*AP*TP*AP*AP*GP*A)-3', DNA-INVERTASE HIN
Authors:Chiu, T.K, Sohn, C, Johnson, R.C, Dickerson, R.E.
Deposit date:2001-07-13
Release date:2002-02-22
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:Testing water-mediated DNA recognition by the Hin recombinase.
EMBO J., 21, 2002
5DNB
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BU of 5dnb by Molmil
STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-G-T-T-G-G AND COMPARISON WITH ISOMORPHOUS DECAMERS C-C-A-A-G-A-T-T-G-G AND C-C-A-G-G-C-C-T-G-G
Descriptor: DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3'), MAGNESIUM ION
Authors:Prive, G.G, Yanagi, K, Dickerson, R.E.
Deposit date:1990-03-22
Release date:1991-10-15
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure of the B-DNA decamer C-C-A-A-C-G-T-T-G-G and comparison with isomorphous decamers C-C-A-A-G-A-T-T-G-G and C-C-A-G-G-C-C-T-G-G.
J.Mol.Biol., 217, 1991
307D
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BU of 307d by Molmil
Structure of a DNA analog of the primer for HIV-1 RT second strand synthesis
Descriptor: DNA (5'-D(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3'), DNA (5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3')
Authors:Han, G.W, Kopka, M.L, Cascio, D, Grzeskowiak, K, Dickerson, R.E.
Deposit date:1997-01-07
Release date:1997-01-27
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure of a DNA analog of the primer for HIV-1 RT second strand synthesis.
J.Mol.Biol., 269, 1997
451C
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BU of 451c by Molmil
STRUCTURE OF CYTOCHROME C551 FROM P. AERUGINOSA REFINED AT 1.6 ANGSTROMS RESOLUTION AND COMPARISON OF THE TWO REDOX FORMS
Descriptor: CYTOCHROME C551, PROTOPORPHYRIN IX CONTAINING FE
Authors:Matsuura, Y, Takano, T, Dickerson, R.E.
Deposit date:1981-07-20
Release date:1981-10-02
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of cytochrome c551 from Pseudomonas aeruginosa refined at 1.6 A resolution and comparison of the two redox forms.
J.Mol.Biol., 156, 1982
334D
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BU of 334d by Molmil
DEFINING GC-SPECIFICITY IN THE MINOR GROOVE: SIDE-BY-SIDE BINDING OF THE DI-IMIDAZOLE LEXITROPSIN TO C-A-T-G-G-C-C-A-T-G
Descriptor: CALCIUM ION, DIIMIDAZOLE LEXITROPSIN, DNA (5'-D(*CP*AP*TP*GP*GP*CP*CP*AP*TP*G)-3')
Authors:Kopka, M.L, Goodsell, D.S, Dickerson, R.E.
Deposit date:1997-05-22
Release date:1997-08-29
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Defining GC-specificity in the minor groove: side-by-side binding of the di-imidazole lexitropsin to C-A-T-G-G-C-C-A-T-G.
Structure, 5, 1997
101D
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BU of 101d by Molmil
REFINEMENT OF NETROPSIN BOUND TO DNA: BIAS AND FEEDBACK IN ELECTRON DENSITY MAP INTERPRETATION
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3'), MAGNESIUM ION, NETROPSIN
Authors:Goodsell, D.S, Kopka, M.L, Dickerson, R.E.
Deposit date:1994-12-14
Release date:1995-02-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Refinement of netropsin bound to DNA: bias and feedback in electron density map interpretation.
Biochemistry, 34, 1995
1A04
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BU of 1a04 by Molmil
THE STRUCTURE OF THE NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL IN THE MONOCLINIC C2 CRYSTAL FORM
Descriptor: NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL
Authors:Baikalov, I, Schroder, I, Kaczor-Grzeskowiak, M, Cascio, D, Gunsalus, R.P, Dickerson, R.E.
Deposit date:1997-12-08
Release date:1998-03-18
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:NarL dimerization? Suggestive evidence from a new crystal form
Biochemistry, 37, 1998
455D
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BU of 455d by Molmil
A6/A18 INTER-STRAND DITHIOBIS(PROPANE)-CROSSLINKED DODECAMER (CGCGAATTCGCG)2
Descriptor: DITHIOBIS-(PROPANE), DNA (5'-D(*CP*GP*CP*GP*AP*(SSP)AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION
Authors:Chiu, T.K, Kaczor-Grzeskowiak, M, Dickerson, R.E.
Deposit date:1999-03-04
Release date:1999-10-08
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Absence of minor groove monovalent cations in the crosslinked dodecamer C-G-C-G-A-A-T-T-C-G-C-G.
J.Mol.Biol., 292, 1999
2BNA
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BU of 2bna by Molmil
STRUCTURE OF A B-DNA DODECAMER AT 16 KELVIN
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')
Authors:Drew, H.R, Samson, S, Dickerson, R.E.
Deposit date:1981-11-12
Release date:1982-02-03
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of a B-DNA dodecamer at 16 K.
Proc.Natl.Acad.Sci.USA, 79, 1982
1SK5
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BU of 1sk5 by Molmil
The ultra-high resolution structure of d(CTTTTAAAAG)2: modulation of bending by T-A steps and its role in DNA recognition
Descriptor: 5'-D(*CP*TP*TP*TP*TP*AP*AP*AP*AP*G)-3', CALCIUM ION
Authors:Han, G.W, Langs, D, Kopka, M.L, Dickerson, R.E.
Deposit date:2004-03-04
Release date:2005-06-21
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (0.89 Å)
Cite:The ultra-high resolution structure of d(CTTTTAAAAG)2: modulation of bending by T-A steps and its role in DNA recognition
To be Published
126D
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BU of 126d by Molmil
CRYSTAL STRUCTURE OF CATGGCCATG AND ITS IMPLICATIONS FOR A-TRACT BENDING MODELS
Descriptor: DNA (5'-D(*CP*AP*TP*GP*GP*CP*CP*AP*TP*G)-3')
Authors:Goodsell, D.S, Kopka, M.L, Cascio, D, Dickerson, R.E.
Deposit date:1993-06-14
Release date:1993-10-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of CATGGCCATG and its implications for A-tract bending models.
Proc.Natl.Acad.Sci.USA, 90, 1993
196D
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BU of 196d by Molmil
CRYSTAL STRUCTURE OF C-T-C-T-C-G-A-G-A-G: IMPLICATIONS FOR THE STRUCTURE OF THE HOLLIDAY JUNCTION
Descriptor: CALCIUM ION, DNA (5'-D(*CP*TP*CP*TP*CP*GP*AP*GP*AP*G)-3')
Authors:Goodsell, D.S, Grzeskowiak, K, Dickerson, R.E.
Deposit date:1994-11-07
Release date:1995-02-27
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of C-T-C-T-C-G-A-G-A-G. Implications for the structure of the Holliday junction.
Biochemistry, 34, 1995
158D
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BU of 158d by Molmil
CRYSTALLOGRAPHIC ANALYSIS OF C-C-A-A-G-C-T-T-G-G AND ITS IMPLICATIONS FOR BENDING IN B-DNA
Descriptor: CALCIUM ION, DNA (5'-D(*CP*CP*AP*AP*GP*CP*TP*TP*GP*G)-3')
Authors:Grzeskowiak, K, Goodsell, D.S, Kaczor-Grzeskowiak, M, Cascio, D, Dickerson, R.E.
Deposit date:1994-02-03
Release date:1994-05-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystallographic analysis of C-C-A-A-G-C-T-T-G-G and its implications for bending in B-DNA.
Biochemistry, 32, 1993
167D
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BU of 167d by Molmil
THE CRYSTAL STRUCTURE OF C-C-A-T-T-A-A-T-G-G: IMPLICATIONS FOR BENDING OF B-DNA AT T-A STEPS
Descriptor: DNA (5'-D(*CP*CP*AP*TP*TP*AP*AP*TP*GP*G)-3')
Authors:Goodsell, D.S, Kaczor-Grzeskowiak, M, Dickerson, R.E.
Deposit date:1994-04-04
Release date:1994-08-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The crystal structure of C-C-A-T-T-A-A-T-G-G. Implications for bending of B-DNA at T-A steps.
J.Mol.Biol., 239, 1994

 

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數據於2024-09-11公開中

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