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PDB: 67 results
1EN9
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BU of 1en9 by Molmil
1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM.
Descriptor: DNA (5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3'), MAGNESIUM ION
Authors:Chiu, T.K, Dickerson, R.E.
Deposit date:2000-03-20
Release date:2000-09-25
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (0.985 Å)
Cite:1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium.
J.Mol.Biol., 301, 2000
1HCR
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BU of 1hcr by Molmil
HIN RECOMBINASE BOUND TO DNA: THE ORIGIN OF SPECIFICITY IN MAJOR AND MINOR GROOVE INTERACTIONS
Descriptor: DNA (5'-D(*TP*CP*TP*TP*AP*TP*CP*AP*AP*AP*AP*AP*C)-3'), DNA (5'-D(*TP*GP*TP*TP*TP*TP*TP*GP*AP*TP*AP*AP*GP*A)-3'), PROTEIN (HIN RECOMBINASE)
Authors:Feng, J.-A, Johnson, R.C, Dickerson, R.E.
Deposit date:1993-12-17
Release date:1994-04-30
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Hin recombinase bound to DNA: the origin of specificity in major and minor groove interactions.
Science, 263, 1994
1IKK
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BU of 1ikk by Molmil
Intrinsic Bending and Deformability at the T-A step of CCTTTAAAGG: A Comparative Analysis of T-A and A-T steps within A-tracts
Descriptor: 5'-D(*CP*CP*TP*TP*TP*AP*AP*AP*GP*G)-3', MAGNESIUM ION
Authors:Mack, D.R, Chiu, T.K, Dickerson, R.E.
Deposit date:2001-05-03
Release date:2001-10-05
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Intrinsic bending and deformability at the T-A step of CCTTTAAAGG: a comparative analysis of T-A and A-T steps within A-tracts.
J.Mol.Biol., 312, 2001
1LEY
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BU of 1ley by Molmil
STRUCTURE OF A DICATIONIC MONOIMIDAZOLE LEXITROPSIN BOUND TO DNA (ORIENTATION 2)
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MONOIMIDAZOLE LEXITROPSIN
Authors:Goodsell, D.S, Ng, H.L, Kopka, M.L, Lown, J.W, Dickerson, R.E.
Deposit date:1995-10-10
Release date:1996-04-03
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structure of a dicationic monoimidazole lexitropsin bound to DNA.
Biochemistry, 34, 1995
1LEX
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BU of 1lex by Molmil
STRUCTURE OF A DICATIONIC MONOIMIDAZOLE LEXITROPSIN BOUND TO DNA (ORIENTATION 1)
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MONOIMIDAZOLE LEXITROPSIN
Authors:Goodsell, D.S, Ng, H.L, Kopka, M.L, Lown, J.W, Dickerson, R.E.
Deposit date:1995-10-10
Release date:1996-04-03
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structure of a dicationic monoimidazole lexitropsin bound to DNA.
Biochemistry, 34, 1995
1JB8
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BU of 1jb8 by Molmil
The Crystal Structure of an RNA/DNA Hybrid Reveals Novel Intermolecular Intercalation
Descriptor: 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3', 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3'
Authors:Han, G.W, Kopka, M.L, Langs, D, Dickerson, R.E.
Deposit date:2001-06-02
Release date:2003-07-01
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Crystal structure of an RNADNA hybrid reveals intermolecular intercalation: Dimer formation by base-pair swapping
Proc.Natl.Acad.Sci.USA, 100, 2003
1JE8
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BU of 1je8 by Molmil
Two-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity Site
Descriptor: 5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3', Nitrate/Nitrite Response Regulator Protein NARL, SULFATE ION
Authors:Maris, A.E, Sawaya, M.R, Kaczor-Grzeskowiak, M, Jarvis, M.R, Bearson, S.M.D, Kopka, M.L, Schroder, I, Gunsalus, R.P, Dickerson, R.E.
Deposit date:2001-06-15
Release date:2002-09-27
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Dimerization allows DNA target site recognition by the NarL response regulator.
Nat.Struct.Biol., 9, 2002
126D
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BU of 126d by Molmil
CRYSTAL STRUCTURE OF CATGGCCATG AND ITS IMPLICATIONS FOR A-TRACT BENDING MODELS
Descriptor: DNA (5'-D(*CP*AP*TP*GP*GP*CP*CP*AP*TP*G)-3')
Authors:Goodsell, D.S, Kopka, M.L, Cascio, D, Dickerson, R.E.
Deposit date:1993-06-14
Release date:1993-10-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of CATGGCCATG and its implications for A-tract bending models.
Proc.Natl.Acad.Sci.USA, 90, 1993
196D
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BU of 196d by Molmil
CRYSTAL STRUCTURE OF C-T-C-T-C-G-A-G-A-G: IMPLICATIONS FOR THE STRUCTURE OF THE HOLLIDAY JUNCTION
Descriptor: CALCIUM ION, DNA (5'-D(*CP*TP*CP*TP*CP*GP*AP*GP*AP*G)-3')
Authors:Goodsell, D.S, Grzeskowiak, K, Dickerson, R.E.
Deposit date:1994-11-07
Release date:1995-02-27
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of C-T-C-T-C-G-A-G-A-G. Implications for the structure of the Holliday junction.
Biochemistry, 34, 1995
158D
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BU of 158d by Molmil
CRYSTALLOGRAPHIC ANALYSIS OF C-C-A-A-G-C-T-T-G-G AND ITS IMPLICATIONS FOR BENDING IN B-DNA
Descriptor: CALCIUM ION, DNA (5'-D(*CP*CP*AP*AP*GP*CP*TP*TP*GP*G)-3')
Authors:Grzeskowiak, K, Goodsell, D.S, Kaczor-Grzeskowiak, M, Cascio, D, Dickerson, R.E.
Deposit date:1994-02-03
Release date:1994-05-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystallographic analysis of C-C-A-A-G-C-T-T-G-G and its implications for bending in B-DNA.
Biochemistry, 32, 1993
167D
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BU of 167d by Molmil
THE CRYSTAL STRUCTURE OF C-C-A-T-T-A-A-T-G-G: IMPLICATIONS FOR BENDING OF B-DNA AT T-A STEPS
Descriptor: DNA (5'-D(*CP*CP*AP*TP*TP*AP*AP*TP*GP*G)-3')
Authors:Goodsell, D.S, Kaczor-Grzeskowiak, M, Dickerson, R.E.
Deposit date:1994-04-04
Release date:1994-08-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The crystal structure of C-C-A-T-T-A-A-T-G-G. Implications for bending of B-DNA at T-A steps.
J.Mol.Biol., 239, 1994
1D30
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BU of 1d30 by Molmil
THE STRUCTURE OF DAPI BOUND TO DNA
Descriptor: 6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3')
Authors:Larsen, T, Goodsell, D.S, Cascio, D, Grzeskowiak, K, Dickerson, R.E.
Deposit date:1991-01-04
Release date:1992-04-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The structure of DAPI bound to DNA.
J.Biomol.Struct.Dyn., 7, 1989
1D60
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BU of 1d60 by Molmil
THE STRUCTURE OF THE B-DNA DECAMER C-C-A-A-C-I-T-T-G-G: TRIGONAL FORM
Descriptor: DNA (5'-D(*CP*CP*AP*AP*CP*IP*TP*TP*GP*G)-3'), MAGNESIUM ION
Authors:Lipanov, A, Kopka, M.L, Kaczor-Grzeskowiak, M, Quintana, J, Dickerson, R.E.
Deposit date:1992-02-26
Release date:1993-04-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of the B-DNA decamer C-C-A-A-C-I-T-T-G-G in two different space groups: conformational flexibility of B-DNA.
Biochemistry, 32, 1993
1DC0
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BU of 1dc0 by Molmil
CRYSTAL STRUCTURE OF AN A/B-DNA INTERMEDIATE CATGGGCCCATG
Descriptor: DNA (5'-D(*CP*AP*TP*GP*GP*GP*CP*CP*CP*AP*TP*G)-3')
Authors:Ng, H.L, Kopka, M.L, Dickerson, R.E.
Deposit date:1999-11-03
Release date:2000-03-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:The structure of a stable intermediate in the A ;-> B DNA helix transition
Proc.Natl.Acad.Sci.USA, 97, 2000
1DN9
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BU of 1dn9 by Molmil
STRUCTURE OF AN ALTERNATING-B DNA HELIX AND ITS RELATIONSHIP TO A-TRACT DNA
Descriptor: DNA (5'-D(*CP*GP*CP*AP*TP*AP*TP*AP*TP*GP*CP*G)-3')
Authors:Yoon, C, Dickerson, R.E.
Deposit date:1989-04-25
Release date:1990-04-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of an alternating-B DNA helix and its relationship to A-tract DNA.
Proc.Natl.Acad.Sci.USA, 85, 1988
1D23
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BU of 1d23 by Molmil
THE STRUCTURE OF B-HELICAL C-G-A-T-C-G-A-T-C-G AND COMPARISON WITH C-C-A-A-C-G-T-T-G-G. THE EFFECT OF BASE PAIR REVERSALS
Descriptor: DNA (5'-D(*CP*GP*AP*TP*CP*GP*AP*TP*CP*G)-3'), MAGNESIUM ION
Authors:Grzeskowiak, K, Yanagi, K, Prive, G.G, Dickerson, R.E.
Deposit date:1991-05-29
Release date:1991-10-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The structure of B-helical C-G-A-T-C-G-A-T-C-G and comparison with C-C-A-A-C-G-T-T-G-G. The effect of base pair reversals.
J.Biol.Chem., 266, 1991
1D29
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BU of 1d29 by Molmil
CRYSTAL STRUCTURE ANALYSIS OF THE B-DNA DODECAMER CGTGAATTCACG
Descriptor: DNA (5'-D(*CP*GP*TP*GP*AP*AP*TP*TP*CP*AP*CP*G)-3')
Authors:Larsen, T.A, Kopka, M.L, Dickerson, R.E.
Deposit date:1991-05-23
Release date:1992-04-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure analysis of the B-DNA dodecamer CGTGAATTCACG.
Biochemistry, 30, 1991
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