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PDB: 1208 件
6OJJ
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BU of 6ojj by Molmil
Structure of ScAtg3 with truncations in N-terminal and flexible region (FR)
分子名称: Autophagy-related protein 3,Autophagy-related protein 3, GLYCEROL
著者Zheng, Y, Qiu, Y, Schulman, B.A.
登録日2019-04-11
公開日2019-08-21
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.406 Å)
主引用文献A switch element in the autophagy E2 Atg3 mediates allosteric regulation across the lipidation cascade.
Nat Commun, 10, 2019
1VWJ
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BU of 1vwj by Molmil
STREPTAVIDIN-CYCLO-[5-S-VALERAMIDE-HPQGPPC]K-NH2, PH 2.5, I222 COMPLEX
分子名称: PENTANOIC ACID, PEPTIDE LIGAND CONTAINING HPQ, STREPTAVIDIN
著者Katz, B.A, Cass, R.T.
登録日1997-03-03
公開日1998-03-18
最終更新日2024-06-05
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献In crystals of complexes of streptavidin with peptide ligands containing the HPQ sequence the pKa of the peptide histidine is less than 3.0.
J.Biol.Chem., 272, 1997
1VWD
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BU of 1vwd by Molmil
STREPTAVIDIN-CYCLO-AC-[CHPQFC]-NH2, PH 3.0
分子名称: PEPTIDE LIGAND CONTAINING HPQ, STREPTAVIDIN
著者Katz, B.A, Cass, R.T.
登録日1997-03-03
公開日1998-03-18
最終更新日2011-11-16
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献In crystals of complexes of streptavidin with peptide ligands containing the HPQ sequence the pKa of the peptide histidine is less than 3.0.
J.Biol.Chem., 272, 1997
1VWP
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STREPTAVIDIN COMPLEXED WITH CYCLO-AC-[CHPQGPPC]-NH2 MONOMER, PH 2.5
分子名称: PEPTIDE LIGAND CONTAINING HPQ, STREPTAVIDIN
著者Katz, B.A, Cass, R.T.
登録日1997-03-03
公開日1998-03-18
最終更新日2024-06-05
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献In crystals of complexes of streptavidin with peptide ligands containing the HPQ sequence the pKa of the peptide histidine is less than 3.0.
J.Biol.Chem., 272, 1997
5TG3
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BU of 5tg3 by Molmil
Crystal Structure of Dioclea reflexa seed lectin (DrfL) in complex with X-Man
分子名称: 5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannopyranoside, CALCIUM ION, Dioclea reflexa lectin, ...
著者Santiago, M.Q, Correia, J.L.A, Pinto-Junior, V.R, Osterne, V.J.S, Pereira, R.I, Silva-Filho, J.C, Lossio, C.F, Rocha, B.A.M, Delatorre, P, Neco, A.H.B, Araripe, D.A, Nascimento, K.S, Cavada, B.S.
登録日2016-09-27
公開日2017-02-15
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.765 Å)
主引用文献Structural studies of a vasorelaxant lectin from Dioclea reflexa Hook seeds: Crystal structure, molecular docking and dynamics.
Int. J. Biol. Macromol., 98, 2017
6P5W
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BU of 6p5w by Molmil
Structure of DCN1 bound to 3-methyl-N-((4S,5S)-3-methyl-6-oxo-1-phenyl-4-(p-tolyl)-4,5,6,7-tetrahydro-1H-pyrazolo[3,4-b]pyridin-5-yl)benzamide
分子名称: 3-methyl-N-[(4S,5S)-3-methyl-4-(4-methylphenyl)-6-oxo-1-phenyl-4,5,6,7-tetrahydro-1H-pyrazolo[3,4-b]pyridin-5-yl]benzamide, Lysozyme,DCN1-like protein 1 chimera
著者Guy, R.K, Kim, H.S, Hammill, J.T, Scott, D.C, Schulman, B.A.
登録日2019-05-31
公開日2019-09-11
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Discovery of Novel Pyrazolo-pyridone DCN1 Inhibitors Controlling Cullin Neddylation.
J.Med.Chem., 62, 2019
6OP6
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BU of 6op6 by Molmil
Structure of VIM-20 in the reduced state
分子名称: Metallo-beta-lactamase VIM-20, SODIUM ION, ZINC ION
著者Page, R.C, Shurina, B.A, Montgomery, J.S, Orischak, M.G, Nix, J.C.
登録日2019-04-24
公開日2019-10-23
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献A Single Salt Bridge in VIM-20 Increases Protein Stability and Antibiotic Resistance under Low-Zinc Conditions.
Mbio, 10, 2019
6ORM
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BU of 6orm by Molmil
Crystal Structure of Peruvianin-I (Cysteine peptidase from Thevetia peruviana latex)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Peruvianin-I, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Cruz, W.T, Bezerra, E.H.S, da Silva, F.M.S, Freire, V.N, Ramos, M.V, Rocha, B.A.M, Freitas, C.D.T.
登録日2019-04-30
公開日2020-05-06
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystal structure and specific location of a germin-like protein with proteolytic activity from Thevetia peruviana.
Plant Sci., 298, 2020
1VWB
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STREPTAVIDIN-CYCLO-AC-[CHPQFC]-NH2, PH 11.8
分子名称: PEPTIDE LIGAND CONTAINING HPQ, STREPTAVIDIN
著者Katz, B.A, Cass, R.T.
登録日1997-03-03
公開日1998-03-18
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献In crystals of complexes of streptavidin with peptide ligands containing the HPQ sequence the pKa of the peptide histidine is less than 3.0.
J.Biol.Chem., 272, 1997
6PEI
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BU of 6pei by Molmil
Structure of sorbitol dehydrogenase from Sinorhizobium meliloti 1021
分子名称: Sorbitol dehydrogenase (L-iditol 2-dehydrogenase)
著者Bailey-Elkin, B.A, Kohlmeier, M.G, Oresnik, I.J, Mark, B.L.
登録日2019-06-20
公開日2020-06-24
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Characterization of the sorbitol dehydrogenase SmoS from Sinorhizobium meliloti 1021
Acta Crystallogr.,Sect.D, 77, 2021
4AON
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BU of 4aon by Molmil
Conformational dynamics of aspartate alpha-decarboxylase active site revealed by protein-ligand complexes: 1-methyl-L-aspartate complex
分子名称: ASPARTATE-ALPHA-DECARBOXYLASE ALPHA CHAIN, ASPARTATE-ALPHA-DECARBOXYLASE BETA CHAIN, GLUTAMIC ACID
著者Yorke, B.A, Monteiro, D.C.F, Pearson, A.R, Webb, M.E.
登録日2012-03-29
公開日2012-10-31
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Conformational Dynamics of Aspartate Alpha Decarboxylase Active Site Revealed by Protein-Ligand Complexes
To be Published
6PEJ
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BU of 6pej by Molmil
Structure of sorbitol dehydrogenase from Sinorhizobium meliloti 1021 bound to sorbitol
分子名称: Sorbitol dehydrogenase (L-iditol 2-dehydrogenase), sorbitol
著者Bailey-Elkin, B.A, Kohlmeier, M.G, Oresnik, I.J, Mark, B.L.
登録日2019-06-20
公開日2020-06-24
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Characterization of the sorbitol dehydrogenase SmoS from Sinorhizobium meliloti 1021
Acta Crystallogr.,Sect.D, 77, 2021
5TGE
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BU of 5tge by Molmil
Thermus Phage P74-26 Large Terminase Nuclease Domain
分子名称: Phage terminase large subunit
著者Hilbert, B.J, Hayes, J.A, Stone, N.P, Kelch, B.A.
登録日2016-09-27
公開日2017-01-25
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献The large terminase DNA packaging motor grips DNA with its ATPase domain for cleavage by the flexible nuclease domain.
Nucleic Acids Res., 45, 2017
1VWA
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BU of 1vwa by Molmil
STREPTAVIDIN-FSHPQNT
分子名称: PEPTIDE LIGAND CONTAINING HPQ, STREPTAVIDIN
著者Katz, B.A, Cass, R.T.
登録日1997-03-03
公開日1998-03-18
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献In crystals of complexes of streptavidin with peptide ligands containing the HPQ sequence the pKa of the peptide histidine is less than 3.0.
J.Biol.Chem., 272, 1997
6OP7
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BU of 6op7 by Molmil
Structure of oxidized VIM-20
分子名称: ACETATE ION, Metallo-beta-lactamase VIM-20, ZINC ION
著者Page, R.C, Shurina, B.A, Montgomery, J.S, Orischak, M.G, Nix, J.C.
登録日2019-04-24
公開日2019-10-23
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.37 Å)
主引用文献A Single Salt Bridge in VIM-20 Increases Protein Stability and Antibiotic Resistance under Low-Zinc Conditions.
Mbio, 10, 2019
1VWH
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BU of 1vwh by Molmil
STREPTAVIDIN COMPLEXED WITH THE HEAD-TO-TAIL DISULFIDE-BONDED PEPTIDE DIMER OF CYCLO-AC-[CHPQGPPC]-NH2, PH 3.5
分子名称: PEPTIDE LIGAND CONTAINING HPQ, STREPTAVIDIN
著者Katz, B.A, Cass, R.T.
登録日1997-03-03
公開日1998-03-18
最終更新日2024-06-05
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献In crystals of complexes of streptavidin with peptide ligands containing the HPQ sequence the pKa of the peptide histidine is less than 3.0.
J.Biol.Chem., 272, 1997
6P5V
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BU of 6p5v by Molmil
Structure of DCN1 bound to N-((4S,5S)-7-ethyl-4-(4-fluorophenyl)-3-methyl-6-oxo-1-phenyl-4,5,6,7-tetrahydro-1H-pyrazolo[3,4-b]pyridin-5-yl)-3-methylbenzamide
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Lysozyme,DCN1-like protein 1 fusion, N-[(4S,5S)-1-[(1S)-cyclohex-3-en-1-yl]-7-ethyl-4-(4-fluorophenyl)-3-methyl-6-oxo-4,5,6,7-tetrahydro-1H-pyrazolo[3,4-b]pyridin-5-yl]-3-methylbenzamide
著者Guy, R.K, Kim, H.S, Hammill, J.T, Scott, D.C, Schulman, B.A.
登録日2019-05-31
公開日2019-09-11
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.398 Å)
主引用文献Discovery of Novel Pyrazolo-pyridone DCN1 Inhibitors Controlling Cullin Neddylation.
J.Med.Chem., 62, 2019
5T7P
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BU of 5t7p by Molmil
Crystal structure of Pisum arvense lectin (PAL) complexed with X-Man
分子名称: 5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannopyranoside, CALCIUM ION, Lectin, ...
著者Pinto-Junior, V.R, Santiago, M.Q, Osterne, V.J.S, Silva-Filho, J.C, Rocha, B.A.M, Delatorre, P, Nascimento, K.S, Cavada, B.S.
登録日2016-09-05
公開日2017-08-09
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.16 Å)
主引用文献Crystal structure of Pisum arvense seed lectin (PAL) and characterization of its interaction with carbohydrates by molecular docking and dynamics.
Arch. Biochem. Biophys., 630, 2017
5TL4
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BU of 5tl4 by Molmil
Crystal structure of Sphingomonas paucimobilis aryl O-demethylase LigM
分子名称: AMMONIUM ION, CHLORIDE ION, GLYCEROL, ...
著者Kohler, A.C, Adams, P.D, Simmons, B.A, Sale, K.L.
登録日2016-10-10
公開日2017-04-12
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.751 Å)
主引用文献Structure of aryl O-demethylase offers molecular insight into a catalytic tyrosine-dependent mechanism.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
4AOK
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BU of 4aok by Molmil
Conformational dynamics of aspartate alpha-decarboxylase active site revealed by protein-ligand complexes: 1-methyl-L-aspartate complex
分子名称: ASPARTATE 1-DECARBOXYLASE ALPHA CHAIN, ASPARTATE 1-DECARBOXYLASE BETA CHAIN
著者Yorke, B.A, Monteiro, D.C.F, Pearson, A.R, Webb, M.E.
登録日2012-03-28
公開日2012-10-31
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Conformational Dynamics of Aspartate Alpha Decarboxylase Active Site Revealed by Protein-Ligand Complexes
To be Published
4CQ6
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BU of 4cq6 by Molmil
The crystal structure of the allene oxide cyclase 2 from Arabidopsis thaliana with bound inhibitor - vernolic acid
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, (9Z)-11-[(2R,3S)-3-pentyloxiran-2-yl]undec-9-enoic acid, ALLENE OXIDE CYCLASE 2, ...
著者Terlecka, B.A, Pollmann, S, Hofmann, E.
登録日2014-02-11
公開日2015-03-04
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The Ligand-Bound Structures of the Aoc2 from A. Thaliana and the Implications for the Catalytic Mechanism
To be Published
5BZB
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BU of 5bzb by Molmil
NavMs voltage-gated sodium channel pore and C-terminal domain
分子名称: DODECAETHYLENE GLYCOL, HEGA-10, Ion transport protein, ...
著者Naylor, C.E, Bagneris, C, Wallace, B.A.
登録日2015-06-11
公開日2016-02-24
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Molecular basis of ion permeability in a voltage-gated sodium channel.
Embo J., 35, 2016
4CQ7
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BU of 4cq7 by Molmil
The crystal structure of the allene oxide cyclase 2 from Arabidopsis thaliana with bound product - OPDA
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, 9S,13R-12-OXOPHYTODIENOIC ACID, ALLENE OXIDE CYCLASE 2, ...
著者Terlecka, B.A, Pollmann, S, Hofmann, E.
登録日2014-02-11
公開日2015-03-04
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献The Ligand-Bound Structures of the Aoc2 from A. Thaliana and the Implications for the Catalytic Mechanism
To be Published
5UDH
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BU of 5udh by Molmil
HHARI/ARIH1-UBCH7~Ubiquitin
分子名称: E3 ubiquitin-protein ligase ARIH1, Ubiquitin C variant, Ubiquitin-conjugating enzyme E2 L3, ...
著者Miller, D.J, Schulman, B.A.
登録日2016-12-27
公開日2017-06-14
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (3.24 Å)
主引用文献Structural Studies of HHARI/UbcH7Ub Reveal Unique E2Ub Conformational Restriction by RBR RING1.
Structure, 25, 2017
5CX8
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BU of 5cx8 by Molmil
Structure of RagB, a major immunodominant virulence factor of Porphyromonas gingivalis.
分子名称: 3-deoxy-5-O-phosphono-beta-D-ribofuranose, 3-deoxy-beta-D-glucopyranose, 6-O-phosphono-D-tagatose, ...
著者Goulas, T, Garcia-Ferrer, I, Hutcherson, J.A, Potempa, B.A, Potempa, J, Scott, D.A, Gomis-Ruth, F.X.
登録日2015-07-28
公開日2015-10-21
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure of RagB, a major immunodominant outer-membrane surface receptor antigen of Porphyromonas gingivalis.
Mol Oral Microbiol, 31, 2016

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