7E97
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 7e97 by Molmil](/molmil-images/mine/7e97) | Oxy-deoxy intermediate of 400 kDa giant hemoglobin at 58% oxygen saturation | 分子名称: | Extracellular giant hemoglobin major globin subunit A1, Extracellular giant hemoglobin major globin subunit A2, Extracellular giant hemoglobin major globin subunit B2, ... | 著者 | Numoto, N, Kawano, Y, Okumura, H, Baba, S, Fukumori, Y, Miki, K, Ito, N. | 登録日 | 2021-03-03 | 公開日 | 2021-10-06 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Coarse snapshots of oxygen-dissociation intermediates of a giant hemoglobin elucidated by determining the oxygen saturation in individual subunits in the crystalline state. Iucrj, 8, 2021
|
|
7E98
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 7e98 by Molmil](/molmil-images/mine/7e98) | Oxy-deoxy intermediate of 400 kDa giant hemoglobin at 21% oxygen saturation | 分子名称: | Extracellular giant hemoglobin major globin subunit A1, Extracellular giant hemoglobin major globin subunit A2, Extracellular giant hemoglobin major globin subunit B2, ... | 著者 | Numoto, N, Kawano, Y, Okumura, H, Baba, S, Fukumori, Y, Miki, K, Ito, N. | 登録日 | 2021-03-03 | 公開日 | 2021-10-06 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Coarse snapshots of oxygen-dissociation intermediates of a giant hemoglobin elucidated by determining the oxygen saturation in individual subunits in the crystalline state. Iucrj, 8, 2021
|
|
7E96
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 7e96 by Molmil](/molmil-images/mine/7e96) | Oxy-deoxy intermediate of 400 kDa giant hemoglobin at 69% oxygen saturation | 分子名称: | CALCIUM ION, Extracellular giant hemoglobin major globin subunit A1, Extracellular giant hemoglobin major globin subunit A2, ... | 著者 | Numoto, N, Kawano, Y, Okumura, H, Baba, S, Fukumori, Y, Miki, K, Ito, N. | 登録日 | 2021-03-03 | 公開日 | 2021-10-06 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Coarse snapshots of oxygen-dissociation intermediates of a giant hemoglobin elucidated by determining the oxygen saturation in individual subunits in the crystalline state. Iucrj, 8, 2021
|
|
1BQF
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1bqf by Molmil](/molmil-images/mine/1bqf) | GROWTH-BLOCKING PEPTIDE (GBP) FROM PSEUDALETIA SEPARATA | 分子名称: | PROTEIN (GROWTH-BLOCKING PEPTIDE) | 著者 | Aizawa, T, Fujitani, N, Hayakawa, Y, Ohnishi, A, Ohkubo, T, Kwano, K, Hikichi, K, Nitta, K. | 登録日 | 1998-08-09 | 公開日 | 1998-12-09 | 最終更新日 | 2023-12-27 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structure of an insect growth factor, growth-blocking peptide. J.Biol.Chem., 274, 1999
|
|
3X42
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3x42 by Molmil](/molmil-images/mine/3x42) | Crystal structure of copper amine oxidase from Arthrobacter globiformis in the presence of sodium bromide | 分子名称: | BROMIDE ION, COPPER (II) ION, GLYCEROL, ... | 著者 | Okajima, T, Nakanishi, S, Murakawa, T, Kataoka, M, Hayashi, H, Hamaguchi, A, Nakai, T, Kawano, Y, Yamaguchi, H, Tanizawa, K. | 登録日 | 2015-03-10 | 公開日 | 2015-08-19 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.875 Å) | 主引用文献 | Probing the Catalytic Mechanism of Copper Amine Oxidase from Arthrobacter globiformis with Halide Ions. J.Biol.Chem., 290, 2015
|
|
3X41
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3x41 by Molmil](/molmil-images/mine/3x41) | Copper amine oxidase from Arthrobacter globiformis: Product Schiff-base form produced by anaerobic reduction in the presence of sodium bromide | 分子名称: | BROMIDE ION, COPPER (II) ION, GLYCEROL, ... | 著者 | Okajima, T, Nakanishi, S, Murakawa, T, Kataoka, M, Hayashi, H, Hamaguchi, A, Nakai, T, Kawano, Y, Yamaguchi, H, Tanizawa, K. | 登録日 | 2015-03-10 | 公開日 | 2015-08-19 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.87 Å) | 主引用文献 | Probing the Catalytic Mechanism of Copper Amine Oxidase from Arthrobacter globiformis with Halide Ions. J.Biol.Chem., 290, 2015
|
|
5NF2
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 5nf2 by Molmil](/molmil-images/mine/5nf2) | The fimbrial shaft protein Mfa1 from Porphyromonas gingivalis | 分子名称: | ACETATE ION, CALCIUM ION, Minor fimbrium subunit Mfa1 | 著者 | Hall, M, Hasegawa, Y, Persson, K. | 登録日 | 2017-03-13 | 公開日 | 2018-02-07 | 最終更新日 | 2024-05-08 | 実験手法 | X-RAY DIFFRACTION (1.73 Å) | 主引用文献 | Structural and functional characterization of shaft, anchor, and tip proteins of the Mfa1 fimbria from the periodontal pathogen Porphyromonas gingivalis. Sci Rep, 8, 2018
|
|
3X3X
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3x3x by Molmil](/molmil-images/mine/3x3x) | Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by phenylethylamine | 分子名称: | 2-PHENYL-ETHANOL, COPPER (II) ION, GLYCEROL, ... | 著者 | Okajima, T, Nakanishi, S, Murakawa, T, Kataoka, M, Hayashi, H, Hamaguchi, A, Nakai, T, Kawano, Y, Yamaguchi, H, Tanizawa, K. | 登録日 | 2015-03-10 | 公開日 | 2015-08-19 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.57 Å) | 主引用文献 | Probing the Catalytic Mechanism of Copper Amine Oxidase from Arthrobacter globiformis with Halide Ions. J.Biol.Chem., 290, 2015
|
|
3X3Z
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3x3z by Molmil](/molmil-images/mine/3x3z) | Copper amine oxidase from Arthrobacter globiformis: Aminoresorcinol form produced by anaerobic reduction with ethylamine hydrochloride | 分子名称: | CHLORIDE ION, COPPER (II) ION, GLYCEROL, ... | 著者 | Okajima, T, Nakanishi, S, Murakawa, T, Kataoka, M, Hayashi, H, Hamaguchi, A, Nakai, T, Kawano, Y, Yamaguchi, H, Tanizawa, K. | 登録日 | 2015-03-10 | 公開日 | 2015-08-19 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.51 Å) | 主引用文献 | Probing the Catalytic Mechanism of Copper Amine Oxidase from Arthrobacter globiformis with Halide Ions. J.Biol.Chem., 290, 2015
|
|
3X40
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3x40 by Molmil](/molmil-images/mine/3x40) | Copper amine oxidase from Arthrobacter globiformis: Product Schiff-base form produced by anaerobic reduction in the presence of sodium chloride | 分子名称: | CHLORIDE ION, COPPER (II) ION, GLYCEROL, ... | 著者 | Okajima, T, Nakanishi, S, Murakawa, T, Kataoka, M, Hayashi, H, Hamaguchi, A, Nakai, T, Kawano, Y, Yamaguchi, H, Tanizawa, K. | 登録日 | 2015-03-10 | 公開日 | 2015-08-19 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.85 Å) | 主引用文献 | Probing the Catalytic Mechanism of Copper Amine Oxidase from Arthrobacter globiformis with Halide Ions. J.Biol.Chem., 290, 2015
|
|
5NF3
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 5nf3 by Molmil](/molmil-images/mine/5nf3) | The fimbrial shaft protein Mfa1 from Porphyromonas gingivalis-C-terminal deletion | 分子名称: | ACETATE ION, CALCIUM ION, Minor fimbrium subunit Mfa1 | 著者 | Hall, M, Hasegawa, Y, Persson, K, Yoshimura, F. | 登録日 | 2017-03-13 | 公開日 | 2018-02-07 | 最終更新日 | 2024-05-08 | 実験手法 | X-RAY DIFFRACTION (1.97 Å) | 主引用文献 | Structural and functional characterization of shaft, anchor, and tip proteins of the Mfa1 fimbria from the periodontal pathogen Porphyromonas gingivalis. Sci Rep, 8, 2018
|
|
5NF4
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 5nf4 by Molmil](/molmil-images/mine/5nf4) | The tip fimbrial protein Mfa3 from Porphyromonas gingivalis with C-terminal truncation. | 分子名称: | FORMIC ACID, Minor fimbrium tip subunit Mfa3, SULFATE ION | 著者 | Hall, M, Hasegawa, Y, Yoshimura, F, Persson, K. | 登録日 | 2017-03-13 | 公開日 | 2018-02-07 | 最終更新日 | 2024-05-08 | 実験手法 | X-RAY DIFFRACTION (1.746 Å) | 主引用文献 | Structural and functional characterization of shaft, anchor, and tip proteins of the Mfa1 fimbria from the periodontal pathogen Porphyromonas gingivalis. Sci Rep, 8, 2018
|
|
5NFI
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 5nfi by Molmil](/molmil-images/mine/5nfi) | The fimbrial anchor protein Mfa2 from Porphyromonas gingivalis | 分子名称: | IODIDE ION, Minor fimbrium anchoring subunit Mfa2 | 著者 | Hall, M, Hasegawa, Y, Persson, K, Yoshimura, F. | 登録日 | 2017-03-14 | 公開日 | 2018-02-07 | 実験手法 | X-RAY DIFFRACTION (2.508 Å) | 主引用文献 | Structural and functional characterization of shaft, anchor, and tip proteins of the Mfa1 fimbria from the periodontal pathogen Porphyromonas gingivalis. Sci Rep, 8, 2018
|
|
8KB5
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 8kb5 by Molmil](/molmil-images/mine/8kb5) | Cryo-EM structure of the human nucleosome containing H3.8 | 分子名称: | DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... | 著者 | Hirai, H, Kujirai, T, Takizawa, Y, Kurumizaka, H. | 登録日 | 2023-08-03 | 公開日 | 2023-10-18 | 最終更新日 | 2023-12-27 | 実験手法 | ELECTRON MICROSCOPY (2.26133 Å) | 主引用文献 | Cryo-EM and biochemical analyses of the nucleosome containing the human histone H3 variant H3.8. J.Biochem., 174, 2023
|
|
7WLR
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 7wlr by Molmil](/molmil-images/mine/7wlr) | Cryo-EM structure of the nucleosome containing Komagataella pastoris histones | 分子名称: | DNA (145-MER), Histone H2A, Histone H2B, ... | 著者 | Fukushima, Y, Hatazawa, S, Hirai, S, Kujirai, T, Takizawa, Y, Kurumizaka, H. | 登録日 | 2022-01-13 | 公開日 | 2022-07-13 | 最終更新日 | 2024-06-26 | 実験手法 | ELECTRON MICROSCOPY (3.54 Å) | 主引用文献 | Structural and biochemical analyses of the nucleosome containing Komagataella pastoris histones. J.Biochem., 172, 2022
|
|
1J2A
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1j2a by Molmil](/molmil-images/mine/1j2a) | Structure of E. coli cyclophilin B K163T mutant | 分子名称: | cyclophilin B | 著者 | Konno, M, Sano, Y, Okudaira, K, Kawaguchi, Y, Yamagishi-Ohmori, Y, Fushinobu, S, Matsuzawa, H. | 登録日 | 2002-12-26 | 公開日 | 2004-02-10 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Escherichia coli cyclophilin B binds a highly distorted form of trans-prolyl peptide isomer Eur.J.Biochem., 271, 2004
|
|
2LHI
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 2lhi by Molmil](/molmil-images/mine/2lhi) | Solution structure of Ca2+/CNA1 peptide-bound yCaM | 分子名称: | CALCIUM ION, Calmodulin,Serine/threonine-protein phosphatase 2B catalytic subunit A1 | 著者 | Ogura, K, Takahashi, K, Kobashigawa, Y, Yoshida, R, Itoh, H, Yazawa, M, Inagaki, F. | 登録日 | 2011-08-10 | 公開日 | 2012-08-29 | 最終更新日 | 2024-05-15 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structures of yeast Saccharomyces cerevisiae calmodulin in calcium- and target peptide-bound states reveal similarities and differences to vertebrate calmodulin. Genes Cells, 17, 2012
|
|
2LHH
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 2lhh by Molmil](/molmil-images/mine/2lhh) | Solution structure of Ca2+-bound yCaM | 分子名称: | CALCIUM ION, Calmodulin | 著者 | Ogura, K, Takahashi, K, Kobashigawa, Y, Yoshida, R, Itoh, H, Yazawa, M, Inagaki, F. | 登録日 | 2011-08-10 | 公開日 | 2012-08-29 | 最終更新日 | 2024-05-15 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structures of yeast Saccharomyces cerevisiae calmodulin in calcium- and target peptide-bound states reveal similarities and differences to vertebrate calmodulin. Genes Cells, 17, 2012
|
|
3VSA
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3vsa by Molmil](/molmil-images/mine/3vsa) | Crystal Structure of O-phosphoserine sulfhydrylase without acetate | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, PYRIDOXAL-5'-PHOSPHATE, Protein CysO | 著者 | Nakamura, T, Kawai, Y, Kataoka, M, Ishikawa, K. | 登録日 | 2012-04-24 | 公開日 | 2012-05-16 | 最終更新日 | 2017-11-22 | 実験手法 | X-RAY DIFFRACTION (2.07 Å) | 主引用文献 | Structural analysis of the substrate recognition mechanism in O-phosphoserine sulfhydrylase from the hyperthermophilic archaeon Aeropyrum pernix K1 J.Mol.Biol., 422, 2012
|
|
3W9K
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3w9k by Molmil](/molmil-images/mine/3w9k) | Crystal structure of thermoacidophile-specific protein STK_08120 complexed with myristic acid | 分子名称: | FATTY ACID-BINDING PROTEIN, MYRISTIC ACID | 著者 | Miyakawa, T, Sawano, Y, Miyazono, K, Miyauchi, Y, Hatano, K, Tanokura, M. | 登録日 | 2013-04-05 | 公開日 | 2013-07-17 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | A thermoacidophile-specific protein family, DUF3211, functions as a fatty acid carrier with novel binding mode. J.Bacteriol., 195, 2013
|
|
3X3Y
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 3x3y by Molmil](/molmil-images/mine/3x3y) | Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by histamine | 分子名称: | COPPER (II) ION, GLYCEROL, POTASSIUM ION, ... | 著者 | Okajima, T, Nakanishi, S, Murakawa, T, Kataoka, M, Hayashi, H, Hamaguchi, A, Nakai, T, Kawano, Y, Yamaguchi, H, Tanizawa, K. | 登録日 | 2015-03-10 | 公開日 | 2015-08-19 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.499 Å) | 主引用文献 | Probing the Catalytic Mechanism of Copper Amine Oxidase from Arthrobacter globiformis with Halide Ions. J.Biol.Chem., 290, 2015
|
|
5GWA
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 5gwa by Molmil](/molmil-images/mine/5gwa) | Crystal structure of TLA-3 extended-spectrum beta-lactamase in a complex with avibactam | 分子名称: | (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide, Beta-lactamase, CHLORIDE ION, ... | 著者 | Wachino, J, Jin, W, Arakawa, Y. | 登録日 | 2016-09-09 | 公開日 | 2017-07-12 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.59 Å) | 主引用文献 | Structural Insights into the TLA-3 Extended-Spectrum beta-Lactamase and Its Inhibition by Avibactam and OP0595. Antimicrob. Agents Chemother., 61, 2017
|
|
5ZP9
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 5zp9 by Molmil](/molmil-images/mine/5zp9) | Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH 6 at 283 K (1) | 分子名称: | COPPER (II) ION, Phenylethylamine oxidase, SODIUM ION | 著者 | Murakawa, T, Baba, S, Kawano, Y, Hayashi, H, Yano, T, Tanizawa, K, Kumasaka, T, Yamamoto, M, Okajima, T. | 登録日 | 2018-04-16 | 公開日 | 2018-12-19 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase. Proc. Natl. Acad. Sci. U.S.A., 116, 2019
|
|
5ZPI
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 5zpi by Molmil](/molmil-images/mine/5zpi) | Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH 6 at 293 K (3) | 分子名称: | 1,2-ETHANEDIOL, COPPER (II) ION, Phenylethylamine oxidase, ... | 著者 | Murakawa, T, Baba, S, Kawano, Y, Hayashi, H, Yano, T, Tanizawa, K, Kumasaka, T, Yamamoto, M, Okajima, T. | 登録日 | 2018-04-16 | 公開日 | 2018-12-19 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.747 Å) | 主引用文献 | In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase Proc. Natl. Acad. Sci. U.S.A., 116, 2019
|
|
1GIR
![Download](/newweb/media/icons/dl.png) ![Visualize](/newweb/media/icons/hoh_3d.png)
![BU of 1gir by Molmil](/molmil-images/mine/1gir) | CRYSTAL STRUCTURE OF THE ENZYMATIC COMPONET OF IOTA-TOXIN FROM CLOSTRIDIUM PERFRINGENS WITH NADPH | 分子名称: | IOTA TOXIN COMPONENT IA, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | 著者 | Tsuge, H, Nagahama, M, Nishimura, H, Hisatsune, J, Sakaguchi, Y, Itogawa, Y, Katunuma, N, Sakurai, J. | 登録日 | 2001-03-12 | 公開日 | 2003-01-14 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Crystal Structure and Site-directed Mutagenesis of Enzymatic Components from Clostridium perfringens Iota-toxin J.MOL.BIOL., 325, 2003
|
|