4Q5C
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![BU of 4q5c by Molmil](/molmil-images/mine/4q5c) | TvNiR in complex with sulfite, middle dose data set | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ... | Authors: | Lazarenko, V.A, Polyakov, K.M, Trofimov, A.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O. | Deposit date: | 2014-04-16 | Release date: | 2014-09-03 | Last modified: | 2017-11-22 | Method: | X-RAY DIFFRACTION (1.62 Å) | Cite: | X-ray-induced changes in the active site structure of octaheme cytochrome c nitrite reductase and its substrate complexes To be Published
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4Q4U
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![BU of 4q4u by Molmil](/molmil-images/mine/4q4u) | TvNiR in complex with sulfite, low dose data set | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ... | Authors: | Lazarenko, V.A, Polyakov, K.M, Trofimov, A.A, Popov, A.N, Tikhonova, T.V, Tikhonov, A.V, Popov, V.O. | Deposit date: | 2014-04-15 | Release date: | 2014-09-03 | Last modified: | 2017-11-22 | Method: | X-RAY DIFFRACTION (1.62 Å) | Cite: | X-ray-induced changes in the active site structure of octaheme cytochrome c nitrite reductase and its substrate complexes to be published
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1XLT
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![BU of 1xlt by Molmil](/molmil-images/mine/1xlt) | Crystal structure of Transhydrogenase [(domain I)2:domain III] heterotrimer complex | Descriptor: | NAD(P) transhydrogenase subunit alpha part 1, NAD(P) transhydrogenase subunit beta, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ... | Authors: | Sundaresan, V, Chartron, J, Yamaguchi, M, Stout, C.D. | Deposit date: | 2004-09-30 | Release date: | 2005-04-05 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (3.1 Å) | Cite: | Conformational Diversity in NAD(H) and Transhydrogenase Nicotinamide Nucleotide Binding Domains J.Mol.Biol., 346, 2005
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4YXG
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![BU of 4yxg by Molmil](/molmil-images/mine/4yxg) | |
4YWI
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![BU of 4ywi by Molmil](/molmil-images/mine/4ywi) | F96S/L167V Double mutant of Plasmodium Falciparum Triosephosphate Isomerase | Descriptor: | 1,2-ETHANEDIOL, SULFATE ION, Triosephosphate isomerase | Authors: | Pareek, V, Balaram, P, Murthy, M.R.N. | Deposit date: | 2015-03-20 | Release date: | 2016-02-03 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.85 Å) | Cite: | Connecting Active-Site Loop Conformations and Catalysis in Triosephosphate Isomerase: Insights from a Rare Variation at Residue 96 in the Plasmodial Enzyme Chembiochem, 17, 2016
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4Z0J
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![BU of 4z0j by Molmil](/molmil-images/mine/4z0j) | F96S/S73A Double mutant of Plasmodium Falciparum Triosephosphate Isomerase | Descriptor: | 1,2-ETHANEDIOL, SULFATE ION, Triosephosphate isomerase | Authors: | Pareek, V, Balaram, P, Murthy, M.R.N. | Deposit date: | 2015-03-26 | Release date: | 2016-02-03 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.07 Å) | Cite: | Connecting Active-Site Loop Conformations and Catalysis in Triosephosphate Isomerase: Insights from a Rare Variation at Residue 96 in the Plasmodial Enzyme Chembiochem, 17, 2016
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4Z0S
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![BU of 4z0s by Molmil](/molmil-images/mine/4z0s) | |
5GV4
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![BU of 5gv4 by Molmil](/molmil-images/mine/5gv4) | |
1PNQ
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![BU of 1pnq by Molmil](/molmil-images/mine/1pnq) | Crystal structure of R. rubrum transhydrogenase domain III bound to NADPH | Descriptor: | NAD(P) transhydrogenase subunit beta, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | Authors: | Sundaresan, V, Yamaguchi, M, Chartron, J, Stout, C.D. | Deposit date: | 2003-06-12 | Release date: | 2003-11-11 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Conformational Change in the NADP(H) Binding Domain of Transhydrogenase Defines Four States Biochemistry, 42, 2003
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1PNO
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![BU of 1pno by Molmil](/molmil-images/mine/1pno) | Crystal structure of R. rubrum transhydrogenase domain III bound to NADP | Descriptor: | NAD(P) transhydrogenase subunit beta, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | Authors: | Sundaresan, V, Yamaguchi, M, Chartron, J, Stout, C.D. | Deposit date: | 2003-06-12 | Release date: | 2003-11-11 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Conformational Change in the NADP(H) Binding Domain of Transhydrogenase Defines Four States Biochemistry, 42, 2003
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4R60
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![BU of 4r60 by Molmil](/molmil-images/mine/4r60) | Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris | Descriptor: | MANGANESE (II) ION, PHOSPHATE ION, Proline dipeptidase, ... | Authors: | Kumar, A, Ghosh, B, Are, V.N, Jamdar, S.N, Makde, R.D, Sharma, S.M. | Deposit date: | 2014-08-22 | Release date: | 2014-09-17 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.83 Å) | Cite: | Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris to be published
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6W2T
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![BU of 6w2t by Molmil](/molmil-images/mine/6w2t) | Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2) | Descriptor: | 18S rRNA, CrPV 5'-UTR IRES, Eukaryotic translation initiation factor 3 subunit A, ... | Authors: | Neupane, R, Pisareva, V, Rodriguez, C.F, Pisarev, A, Fernandez, I.S. | Deposit date: | 2020-03-08 | Release date: | 2020-04-22 | Last modified: | 2024-03-20 | Method: | ELECTRON MICROSCOPY (3.36 Å) | Cite: | A complex IRES at the 5'-UTR of a viral mRNA assembles a functional 48S complex via an uAUG intermediate. Elife, 9, 2020
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2I7U
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![BU of 2i7u by Molmil](/molmil-images/mine/2i7u) | Structural and Dynamical Analysis of a Four-Alpha-Helix Bundle with Designed Anesthetic Binding Pockets | Descriptor: | Four-alpha-helix bundle | Authors: | Ma, D, Brandon, N.R, Cui, T, Bondarenko, V, Canlas, C, Johansson, J.S, Tang, P, Xu, Y. | Deposit date: | 2006-08-31 | Release date: | 2007-09-11 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Four-alpha-helix bundle with designed anesthetic binding pockets. Part I: structural and dynamical analyses. Biophys.J., 94, 2008
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5FCH
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![BU of 5fch by Molmil](/molmil-images/mine/5fch) | Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris, phosphate and Zn bound | Descriptor: | DI(HYDROXYETHYL)ETHER, GLY-GLY-GLY, GLYCEROL, ... | Authors: | Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R.D. | Deposit date: | 2015-12-15 | Release date: | 2016-12-07 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | Crystal structure and biochemical investigations reveal novel mode of substrate selectivity and illuminate substrate inhibition and allostericity in a subfamily of Xaa-Pro dipeptidases Biochim. Biophys. Acta, 1865, 2017
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5FCF
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![BU of 5fcf by Molmil](/molmil-images/mine/5fcf) | Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris, phosphate and Mn bound | Descriptor: | DI(HYDROXYETHYL)ETHER, GLY-GLY-GLY, GLYCEROL, ... | Authors: | Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R.D. | Deposit date: | 2015-12-15 | Release date: | 2016-12-07 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.85 Å) | Cite: | Crystal structure and biochemical investigations reveal novel mode of substrate selectivity and illuminate substrate inhibition and allostericity in a subfamily of Xaa-Pro dipeptidases. Biochim. Biophys. Acta, 1865, 2017
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5CNX
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![BU of 5cnx by Molmil](/molmil-images/mine/5cnx) | Crystal structure of Xaa-Pro aminopeptidase from Escherichia coli K12 | Descriptor: | Aminopeptidase YpdF, CACODYLATE ION, GLYCEROL, ... | Authors: | Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R.D. | Deposit date: | 2015-07-18 | Release date: | 2016-07-20 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Structures and activities of widely conserved small prokaryotic aminopeptidases-P clarify classification of M24B peptidases Proteins, 2018
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8BBU
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![BU of 8bbu by Molmil](/molmil-images/mine/8bbu) | Crystal structure of medical leech destabilase (high salt) | Descriptor: | GLYCEROL, Lysozyme, MALONATE ION, ... | Authors: | Marin, E, Bukhdruker, S, Manuvera, V, Kornilov, D, Zinovev, E, Bobrovsky, P, Lazarev, V, Borshchevskiy, V. | Deposit date: | 2022-10-14 | Release date: | 2023-02-08 | Last modified: | 2024-02-21 | Method: | X-RAY DIFFRACTION (1.1 Å) | Cite: | Structural insights into thrombolytic activity of destabilase from medicinal leech. Sci Rep, 13, 2023
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6A8M
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![BU of 6a8m by Molmil](/molmil-images/mine/6a8m) | N-terminal domain of FACT complex subunit SPT16 from Eremothecium gossypii (Ashbya gossypii) | Descriptor: | FACT complex subunit SPT16 | Authors: | Gaur, N.K, Are, V.N, Durani, V, Ghosh, B, Kumar, A, Kulkarni, K, Makde, R.D. | Deposit date: | 2018-07-09 | Release date: | 2018-08-15 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Evolutionary conservation of protein dynamics: insights from all-atom molecular dynamics simulations of 'peptidase' domain of Spt16. J.Biomol.Struct.Dyn., 2021
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8BBW
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![BU of 8bbw by Molmil](/molmil-images/mine/8bbw) | Crystal structure of medical leech destabilase (low salt) | Descriptor: | CHLORIDE ION, GLYCEROL, Lysozyme | Authors: | Marin, E, Bukhdruker, S, Manuvera, V, Kornilov, D, Zinovev, E, Bobrovsky, P, Lazarev, V, Borshchevskiy, V. | Deposit date: | 2022-10-14 | Release date: | 2023-02-08 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | Structural basis for inhibition of thrombolytic destabilase
from medical leech by physiological sodium concentrations To Be Published
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5CDE
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![BU of 5cde by Molmil](/molmil-images/mine/5cde) | R372A mutant of Xaa-Pro dipeptidase from Xanthomonas campestris | Descriptor: | Proline dipeptidase, SULFATE ION, ZINC ION | Authors: | Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R. | Deposit date: | 2015-07-03 | Release date: | 2016-09-14 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.85 Å) | Cite: | R372A mutant of Xaa-Pro dipeptidase from Xanthomonas campestris at 1.85 Angstrom resolution To Be Published
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5CDL
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![BU of 5cdl by Molmil](/molmil-images/mine/5cdl) | Proline dipeptidase from Deinococcus radiodurans (selenomethionine derivative) | Descriptor: | MANGANESE (II) ION, PHOSPHATE ION, Proline dipeptidase | Authors: | Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R. | Deposit date: | 2015-07-04 | Release date: | 2016-08-10 | Last modified: | 2018-07-04 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Proline dipeptidase from Deinococcus radiodurans (selenomethionine derivative) To Be Published
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5CDV
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![BU of 5cdv by Molmil](/molmil-images/mine/5cdv) | Proline dipeptidase from Deinococcus radiodurans R1 | Descriptor: | MANGANESE (II) ION, PHOSPHATE ION, Proline dipeptidase, ... | Authors: | Kumar, A, Are, V, Ghosh, B, Jamdar, S, Makde, R. | Deposit date: | 2015-07-05 | Release date: | 2016-08-10 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.45 Å) | Cite: | Proline dipeptidase from Deinococcus radiodurans R1 at 1.45 Angstrom resolution To Be Published
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5CIK
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![BU of 5cik by Molmil](/molmil-images/mine/5cik) | Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris in citrate condition | Descriptor: | CITRIC ACID, GLYCEROL, Proline dipeptidase | Authors: | Kumar, A, Are, V, Ghosh, B, Agrawal, U, Jamdar, S, Makde, R.D. | Deposit date: | 2015-07-13 | Release date: | 2016-07-20 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris in citrate condition To Be Published
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6XW2
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![BU of 6xw2 by Molmil](/molmil-images/mine/6xw2) | Crystal structure of the bright genetically encoded calcium indicator NCaMP7 based on mNeonGreen fluorescent protein | Descriptor: | CALCIUM ION, Genetically encoded calcium indicator NCaMP7 based on mNeonGreen fluorescent protein, SULFATE ION | Authors: | Boyko, K.M, Nikolaeva, A.Y, Korzhenevskiy, D.A, Lazarenko, V.A, Subach, O.M, Subach, F.V. | Deposit date: | 2020-01-22 | Release date: | 2020-01-29 | Last modified: | 2024-01-24 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | Novel Genetically Encoded Bright Positive Calcium Indicator NCaMP7 Based on the mNeonGreen Fluorescent Protein. Int J Mol Sci, 21, 2020
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6Y7R
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![BU of 6y7r by Molmil](/molmil-images/mine/6y7r) | Structure of Chloroflexus aggregans Cagg_3753 LOV domain C85A A56P variant (CagFbFP) | Descriptor: | FLAVIN MONONUCLEOTIDE, Multi-sensor hybrid histidine kinase | Authors: | Remeeva, A, Nazarenko, V, Kovalev, K, Gordeliy, V, Gushchin, I. | Deposit date: | 2020-03-02 | Release date: | 2020-04-22 | Last modified: | 2024-01-24 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Effects of Proline Substitutions on the Thermostable LOV Domain from Chloroflexus aggregans Crystals, 2020
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