6CWJ
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![BU of 6cwj by Molmil](/molmil-images/mine/6cwj) | Crystal structures of cyanuric acid hydrolase from Moorella thermoacetica complexed with 1,3-Acetone Dicarboxylic Acid | 分子名称: | 1,3-PROPANDIOL, 3-oxopentanedioic acid, ACETATE ION, ... | 著者 | Shi, K, Aihara, H. | 登録日 | 2018-03-30 | 公開日 | 2019-06-12 | 最終更新日 | 2023-10-04 | 実験手法 | X-RAY DIFFRACTION (2.253 Å) | 主引用文献 | Crystal structures of Moorella thermoacetica cyanuric acid hydrolase reveal conformational flexibility and asymmetry important for catalysis. Plos One, 14, 2019
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6BUP
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![BU of 6bup by Molmil](/molmil-images/mine/6bup) | Crystal structures of cyanuric acid hydrolase from Moorella thermoacetica complexed with cyanuric acid | 分子名称: | 1,3,5-triazine-2,4,6-triol, 1,3-PROPANDIOL, CALCIUM ION, ... | 著者 | Shi, K, Aihara, H. | 登録日 | 2017-12-11 | 公開日 | 2019-06-12 | 最終更新日 | 2023-10-04 | 実験手法 | X-RAY DIFFRACTION (1.88 Å) | 主引用文献 | Crystal structures of Moorella thermoacetica cyanuric acid hydrolase reveal conformational flexibility and asymmetry important for catalysis. Plos One, 14, 2019
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7KM6
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![BU of 7km6 by Molmil](/molmil-images/mine/7km6) | APOBEC3B antibody 5G7 Fv-clasp | 分子名称: | 1,2-ETHANEDIOL, 5G7 human monoclonal FAB heavy chain, 5G7 human monoclonal FAB light chain, ... | 著者 | Tang, H, Shi, K, Aihara, H. | 登録日 | 2020-11-02 | 公開日 | 2021-05-12 | 最終更新日 | 2023-10-18 | 実験手法 | X-RAY DIFFRACTION (1.67 Å) | 主引用文献 | Structural Characterization of a Minimal Antibody against Human APOBEC3B. Viruses, 13, 2021
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6BUQ
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![BU of 6buq by Molmil](/molmil-images/mine/6buq) | |
6DHJ
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![BU of 6dhj by Molmil](/molmil-images/mine/6dhj) | |
6DRT
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![BU of 6drt by Molmil](/molmil-images/mine/6drt) | |
7JT4
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![BU of 7jt4 by Molmil](/molmil-images/mine/7jt4) | Crystal Structure of BPTF bromodomain labelled with 5-fluoro-tryptophan | 分子名称: | Nucleosome-remodeling factor subunit BPTF | 著者 | Johnson, J.A, Shi, K, Aihara, H, Pomerantz, W.C.K. | 登録日 | 2020-08-17 | 公開日 | 2021-07-28 | 最終更新日 | 2023-10-18 | 実験手法 | X-RAY DIFFRACTION (2.06 Å) | 主引用文献 | Selectivity, ligand deconstruction, and cellular activity analysis of a BPTF bromodomain inhibitor Org.Biomol.Chem., 17, 2019
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4E0J
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![BU of 4e0j by Molmil](/molmil-images/mine/4e0j) | Protelomerase tela R255A mutant complexed with DNA hairpin product | 分子名称: | CHLORIDE ION, DNA (5'-D(*CP*AP*TP*AP*AP*TP*AP*AP*CP*AP*AP*TP*A)-3'), DNA (5'-D(*TP*CP*AP*TP*GP*AP*TP*AP*TP*TP*GP*TP*TP*AP*TP*TP*AP*TP*G)-3'), ... | 著者 | Shi, K, Aihara, H. | 登録日 | 2012-03-04 | 公開日 | 2013-02-13 | 最終更新日 | 2024-02-28 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | An enzyme-catalyzed multistep DNA refolding mechanism in hairpin telomere formation. Plos Biol., 11, 2013
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4E0Y
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4EP4
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![BU of 4ep4 by Molmil](/molmil-images/mine/4ep4) | Thermus thermophilus RuvC structure | 分子名称: | Crossover junction endodeoxyribonuclease RuvC, GLYCEROL, MAGNESIUM ION | 著者 | Chen, L, Shi, K, Yin, Z.Q, Aihara, H. | 登録日 | 2012-04-17 | 公開日 | 2012-11-14 | 最終更新日 | 2024-02-28 | 実験手法 | X-RAY DIFFRACTION (1.28 Å) | 主引用文献 | Structural asymmetry in the Thermus thermophilus RuvC dimer suggests a basis for sequential strand cleavages during Holliday junction resolution. Nucleic Acids Res., 41, 2013
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4E0P
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![BU of 4e0p by Molmil](/molmil-images/mine/4e0p) | Protelomerase tela covalently complexed with substrate DNA | 分子名称: | 1,2-ETHANEDIOL, DNA (5'-D(*CP*AP*TP*AP*AP*TP*AP*AP*CP*AP*AP*TP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*GP*AP*TP*AP*TP*TP*GP*TP*TP*AP*TP*TP*AP*TP*G)-3'), ... | 著者 | Shi, K, Aihara, H. | 登録日 | 2012-03-05 | 公開日 | 2013-02-13 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | An enzyme-catalyzed multistep DNA refolding mechanism in hairpin telomere formation. Plos Biol., 11, 2013
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4E10
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![BU of 4e10 by Molmil](/molmil-images/mine/4e10) | Protelomerase tela Y201A covalently complexed with substrate DNA | 分子名称: | DNA (5'-D(*CP*AP*TP*AP*AP*(BRU)P*AP*AP*CP*AP*AP*(BRU)P*AP*T)-3'), DNA (5'-D(*CP*AP*TP*GP*AP*TP*AP*(BRU)P*(BRU)P*GP*(BRU)P*(BRU)P*AP*(BRU)P*(BRU)P*AP*(BRU)P*G)-3'), Protelomerase, ... | 著者 | Shi, K, Aihara, H. | 登録日 | 2012-03-05 | 公開日 | 2013-02-13 | 実験手法 | X-RAY DIFFRACTION (2.506 Å) | 主引用文献 | An enzyme-catalyzed multistep DNA refolding mechanism in hairpin telomere formation. Plos Biol., 11, 2013
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4EP5
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![BU of 4ep5 by Molmil](/molmil-images/mine/4ep5) | Thermus thermophilus RuvC structure | 分子名称: | Crossover junction endodeoxyribonuclease RuvC, GLYCEROL, SULFATE ION | 著者 | Chen, L, Shi, K, Yin, Z.Q, Aihara, H. | 登録日 | 2012-04-17 | 公開日 | 2012-11-14 | 最終更新日 | 2024-02-28 | 実験手法 | X-RAY DIFFRACTION (2.08 Å) | 主引用文献 | Structural asymmetry in the Thermus thermophilus RuvC dimer suggests a basis for sequential strand cleavages during Holliday junction resolution. Nucleic Acids Res., 41, 2013
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4DWP
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![BU of 4dwp by Molmil](/molmil-images/mine/4dwp) | SeMet protelomerase tela covalently complexed with substrate DNA | 分子名称: | DNA (5'-D(*CP*AP*TP*GP*AP*TP*AP*TP*TP*GP*TP*TP*AP*TP*TP*GP*TP*AP*A)-3'), DNA (5'-D(*TP*TP*AP*CP*AP*AP*TP*AP*AP*CP*AP*AP*TP*AP*T)-3'), Protelomerase, ... | 著者 | Shi, K, Aihara, H. | 登録日 | 2012-02-26 | 公開日 | 2013-02-13 | 実験手法 | X-RAY DIFFRACTION (2.35 Å) | 主引用文献 | An enzyme-catalyzed multistep DNA refolding mechanism in hairpin telomere formation. Plos Biol., 11, 2013
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4F1I
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4E0G
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![BU of 4e0g by Molmil](/molmil-images/mine/4e0g) | Protelomerase tela/DNA hairpin product/vanadate complex | 分子名称: | DNA (5'-D(*CP*AP*TP*AP*AP*TP*AP*AP*CP*AP*AP*TP*A)-3'), DNA (5'-D(*TP*CP*AP*TP*GP*AP*TP*AP*TP*TP*GP*TP*TP*AP*TP*TP*AP*TP*G)-3'), Protelomerase, ... | 著者 | Shi, K, Aihara, H. | 登録日 | 2012-03-03 | 公開日 | 2013-02-13 | 最終更新日 | 2024-02-28 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | An enzyme-catalyzed multistep DNA refolding mechanism in hairpin telomere formation. Plos Biol., 11, 2013
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4E0Z
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4F1H
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![BU of 4f1h by Molmil](/molmil-images/mine/4f1h) | Crystal structure of TDP2 from Danio rerio complexed with a single strand DNA | 分子名称: | DNA (5'-D(P*TP*GP*CP*AP*G)-3'), GLYCEROL, MAGNESIUM ION, ... | 著者 | Shi, K, Kurahashi, K, Aihara, H. | 登録日 | 2012-05-06 | 公開日 | 2012-10-31 | 最終更新日 | 2024-02-28 | 実験手法 | X-RAY DIFFRACTION (1.662 Å) | 主引用文献 | Structural basis for recognition of 5'-phosphotyrosine adducts by Tdp2. Nat.Struct.Mol.Biol., 19, 2012
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4FPV
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![BU of 4fpv by Molmil](/molmil-images/mine/4fpv) | Crystal structure of D. rerio TDP2 complexed with single strand DNA product | 分子名称: | DNA (5'-D(P*TP*GP*CP*AP*G)-3'), GLYCEROL, MAGNESIUM ION, ... | 著者 | Shi, K, Kurahashi, K, Aihara, H. | 登録日 | 2012-06-22 | 公開日 | 2012-10-31 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.73 Å) | 主引用文献 | Structural basis for recognition of 5'-phosphotyrosine adducts by Tdp2. Nat.Struct.Mol.Biol., 19, 2012
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4FW2
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7K32
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![BU of 7k32 by Molmil](/molmil-images/mine/7k32) | Crystal structure of Endonuclease Q complex with 27-mer duplex substrate with an abasic lesion at the active site | 分子名称: | DNA (27-MER), Endonuclease Q, MAGNESIUM ION, ... | 著者 | Shi, K, Moeller, N.M, Banerjee, S, Yin, L, Orellana, K, Aihara, H. | 登録日 | 2020-09-10 | 公開日 | 2021-03-17 | 最終更新日 | 2023-10-18 | 実験手法 | X-RAY DIFFRACTION (3.11 Å) | 主引用文献 | Structural basis for recognition of distinct deaminated DNA lesions by endonuclease Q. Proc.Natl.Acad.Sci.USA, 118, 2021
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7K33
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![BU of 7k33 by Molmil](/molmil-images/mine/7k33) | Crystal structure of Endonuclease Q complex with 27-mer duplex substrate with an abasic lesion at the active site | 分子名称: | DNA (27-MER), Endonuclease Q, MAGNESIUM ION, ... | 著者 | Shi, K, Moeller, N.M, Banerjee, S, Yin, L, Orellana, K, Aihara, H. | 登録日 | 2020-09-10 | 公開日 | 2021-03-17 | 最終更新日 | 2023-10-18 | 実験手法 | X-RAY DIFFRACTION (3.11 Å) | 主引用文献 | Structural basis for recognition of distinct deaminated DNA lesions by endonuclease Q. Proc.Natl.Acad.Sci.USA, 118, 2021
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7K30
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![BU of 7k30 by Molmil](/molmil-images/mine/7k30) | Crystal structure of Endonuclease Q complex with 27-mer duplex substrate with dU at the active site | 分子名称: | 1,2-ETHANEDIOL, DNA (27-MER), Endonuclease Q, ... | 著者 | Shi, K, Moeller, N.M, Banerjee, S, Yin, L, Orellana, K, Aihara, H. | 登録日 | 2020-09-10 | 公開日 | 2021-03-17 | 最終更新日 | 2023-10-18 | 実験手法 | X-RAY DIFFRACTION (2.34 Å) | 主引用文献 | Structural basis for recognition of distinct deaminated DNA lesions by endonuclease Q. Proc.Natl.Acad.Sci.USA, 118, 2021
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7JN3
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![BU of 7jn3 by Molmil](/molmil-images/mine/7jn3) | Cryo-EM structure of Rous sarcoma virus cleaved synaptic complex (CSC) with HIV-1 integrase strand transfer inhibitor MK-2048 | 分子名称: | (6S)-2-(3-chloro-4-fluorobenzyl)-8-ethyl-10-hydroxy-N,6-dimethyl-1,9-dioxo-1,2,6,7,8,9-hexahydropyrazino[1',2':1,5]pyrrolo[2,3-d]pyridazine-4-carboxamide, DNA (5'-D(*AP*AP*TP*GP*TP*TP*GP*TP*CP*TP*TP*AP*TP*GP*CP*AP*AP*T)-3'), DNA (5'-D(*AP*TP*TP*GP*CP*AP*TP*AP*AP*GP*AP*CP*AP*AP*CP*A)-3'), ... | 著者 | Pandey, K.K, Bera, S, Shi, K, Aihara, H, Grandgenett, D.P. | 登録日 | 2020-08-03 | 公開日 | 2021-03-17 | 最終更新日 | 2024-05-15 | 実験手法 | ELECTRON MICROSCOPY (3.21 Å) | 主引用文献 | Cryo-EM structure of the Rous sarcoma virus octameric cleaved synaptic complex intasome. Commun Biol, 4, 2021
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7K31
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![BU of 7k31 by Molmil](/molmil-images/mine/7k31) | Crystal structure of Endonuclease Q complex with 27-mer duplex substrate with dI at the active site | 分子名称: | 1,2-ETHANEDIOL, CHLORIDE ION, DNA (27-MER), ... | 著者 | Shi, K, Moeller, N.M, Banerjee, S, Yin, L, Orellana, K, Aihara, H. | 登録日 | 2020-09-10 | 公開日 | 2021-03-17 | 最終更新日 | 2023-10-18 | 実験手法 | X-RAY DIFFRACTION (2.88 Å) | 主引用文献 | Structural basis for recognition of distinct deaminated DNA lesions by endonuclease Q. Proc.Natl.Acad.Sci.USA, 118, 2021
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