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PDB: 89035 results

8TXA
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BU of 8txa by Molmil
Apo Structure of (N1G37) tRNA Methyltransferase from Mycobacterium marinum
Descriptor: tRNA (guanine-N(1)-)-methyltransferase
Authors:Balsamo, A, Bruno, C, Edele, C, Fabian, T, Jannotta, R, Lee, R, Schryver, D, Warsaw, J, Warsaw, L, Stojanoff, V, Battaile, K, Perez, A, Bolen, R.
Deposit date:2023-08-23
Release date:2024-04-10
Method:X-RAY DIFFRACTION (1.591 Å)
Cite:Apo Structure of (N1G37) tRNA Methyltransferase from Mycobacterium marinum
To Be Published
7BZM
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BU of 7bzm by Molmil
Crystal structure of rice Os3BGlu7 with glucoimidazole
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Beta-glucosidase 7, GLUCOIMIDAZOLE, ...
Authors:Pengthaisong, S, Ketudat Cairns, J.R, Tankrathok, A.
Deposit date:2020-04-28
Release date:2020-07-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Basis of Specific Glucoimidazole and Mannoimidazole Binding by Os3BGlu7.
Biomolecules, 10, 2020
8DI5
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BU of 8di5 by Molmil
Cryo-EM structure of SARS-CoV-2 Beta (B.1.351) spike protein in complex with VH domain F6 (focused refinement of RBD and VH F6)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, VH F6
Authors:Zhu, X, Saville, J.W, Mannar, D, Berezuk, A.M, Subramaniam, S.
Deposit date:2022-06-28
Release date:2022-08-24
Method:ELECTRON MICROSCOPY (3.04 Å)
Cite:Potent and broad neutralization of SARS-CoV-2 variants of concern (VOCs) including omicron sub-lineages BA.1 and BA.2 by biparatopic human VH domains.
Iscience, 25, 2022
8DF9
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BU of 8df9 by Molmil
Structure of M. kandleri topoisomerase V in complex with DNA. 38 base pair asymmetric DNA complex
Descriptor: DNA (33-MER), DNA (5'-D(P*GP*CP*CP*TP*GP*CP*AP*CP*GP*AP*AP*GP*TP*AP*AP*GP*C)-3'), DNA (5'-D(P*GP*CP*CP*TP*GP*CP*AP*CP*GP*AP*AP*GP*TP*AP*AP*GP*CP*A)-3'), ...
Authors:Osterman, A, Mondragon, A.
Deposit date:2022-06-21
Release date:2022-08-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.24 Å)
Cite:Structures of topoisomerase V in complex with DNA reveal unusual DNA binding mode and novel relaxation mechanism.
Elife, 11, 2022
6VOQ
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BU of 6voq by Molmil
Crystal structure of YgbL, a putative aldolase/epimerase/decarboxylase from Klebsiella pneumoniae
Descriptor: Aldolase, CHLORIDE ION, ZINC ION
Authors:Stogios, P.J, Evdokimova, E, McChesney, C, Di Leo, R, Savchenko, A, Joachimiak, A, Satchell, K.J.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2020-01-31
Release date:2020-02-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Crystal structure of YgbL, a putative aldolase/epimerase/decarboxylase from Klebsiella pneumoniae
To Be Published
6VOS
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BU of 6vos by Molmil
Crystal structure of macaque anti-HIV-1 antibody RM20J
Descriptor: 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, HEXAETHYLENE GLYCOL, NONAETHYLENE GLYCOL, ...
Authors:Yuan, M, Wilson, I.A.
Deposit date:2020-01-31
Release date:2020-09-16
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.299 Å)
Cite:Mapping the immunogenic landscape of near-native HIV-1 envelope trimers in non-human primates.
Plos Pathog., 16, 2020
7SXB
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BU of 7sxb by Molmil
NMR Solution Structure for Domain 3 of Heligmosomoides polygyrus protein Transforming Growth Factor Beta Mimic 1 (TGM-1 D3)
Descriptor: Transforming growth factor mimic
Authors:Mukundan, A, Byeon, C, Hinck, A.P.
Deposit date:2021-11-22
Release date:2022-05-18
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Convergent evolution of a parasite-encoded complement control protein-scaffold to mimic binding of mammalian TGF-beta to its receptors, T beta RI and T beta RII.
J.Biol.Chem., 298, 2022
6PHL
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BU of 6phl by Molmil
Crystal structure of glucagon analog with mono-stereoinversion at position 23 (D-Val23) in space group I41 at 1.44 A resolution
Descriptor: Glucagon
Authors:Mroz, P.A, Gonzalez-Gutierrez, G, DiMarchi, R.D.
Deposit date:2019-06-25
Release date:2020-07-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.443 Å)
Cite:High resolution X-ray structure of glucagon and selected stereo-inversed analogs in novel crystallographic packing arrangement.
To Be Published
6YXT
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BU of 6yxt by Molmil
Crystal structure of the ADP-bound form of choline kinase from Plasmodium falciparum
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, Choline kinase, ...
Authors:Torretta, A, Parisini, E.
Deposit date:2020-05-03
Release date:2020-08-05
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of the Apo and the ADP-Bound Form of Choline Kinase from Plasmodium falciparum
Crystals, 2020
6PHQ
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BU of 6phq by Molmil
Crystal structure of glucagon analog fully composed of D-amino acids with 4-bromo-D-phenylalanine substitutions at position 6 and 22 in space group I41 at 1.1 A resolution
Descriptor: D-glucagon D-BrPhe 6,22
Authors:Mroz, P.A, Gonzalez-Gutierrez, G, DiMarchi, R.D.
Deposit date:2019-06-25
Release date:2020-07-01
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:High resolution X-ray structure of glucagon and selected stereo-inversed analogs in novel crystallographic packing arrangement.
To Be Published
6PHU
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BU of 6phu by Molmil
SpAga wild type apo structure
Descriptor: 1,2-ETHANEDIOL, Alpha-galactosidase, L(+)-TARTARIC ACID
Authors:Pluvinage, B, Boraston, A.B.
Deposit date:2019-06-25
Release date:2019-10-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Molecular analysis of an enigmaticStreptococcus pneumoniaevirulence factor: The raffinose-family oligosaccharide utilization system.
J.Biol.Chem., 294, 2019
8A7D
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BU of 8a7d by Molmil
Partial dimer complex of PAPP-A and its inhibitor STC2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Pappalysin-1, ...
Authors:Kobbero, S.D, Gajhede, M, Mirza, O.A, Boesen, T, Oxvig, C.
Deposit date:2022-06-20
Release date:2022-11-02
Method:ELECTRON MICROSCOPY (3.06 Å)
Cite:Structure of the proteolytic enzyme PAPP-A with the endogenous inhibitor stanniocalcin-2 reveals its inhibitory mechanism.
Nat Commun, 13, 2022
6N1T
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BU of 6n1t by Molmil
Toxoplasma gondii TS-DHFR in complex with selective inhibitor 3
Descriptor: 10-PROPARGYL-5,8-DIDEAZAFOLIC ACID, 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, 5-{4-[3-(2-methoxypyrimidin-5-yl)phenyl]piperazin-1-yl}pyrimidine-2,4-diamine, ...
Authors:Hopper, A.T, Brockman, A, Wise, A, Gould, J, Barks, J, Radke, J.B, Sibley, L.D, Zou, Y, Thomas, S.B.
Deposit date:2018-11-11
Release date:2019-01-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Discovery of Selective Toxoplasma gondii Dihydrofolate Reductase Inhibitors for the Treatment of Toxoplasmosis.
J. Med. Chem., 62, 2019
6VJP
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BU of 6vjp by Molmil
Structure of Staphylococcus aureus peptidoglycan O-acetyltransferase A (OatA) C-terminal catalytic domain
Descriptor: Acetyltransferase, SODIUM ION
Authors:Jones, C.J, Sychantha, D, Howell, P.L, Clarke, A.J.
Deposit date:2020-01-16
Release date:2020-05-06
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.711 Å)
Cite:Structural basis for theO-acetyltransferase function of the extracytoplasmic domain of OatA fromStaphylococcus aureus.
J.Biol.Chem., 295, 2020
6SU5
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BU of 6su5 by Molmil
Ph2119 endolysin from Thermus scotoductus MAT2119 bacteriophage Ph2119
Descriptor: GLYCEROL, Lysozyme, PHOSPHATE ION, ...
Authors:Hakansson, M, Al-Karadaghi, S, Plotka, M, Kaczorowska, A.K, Kaczorowski, T.
Deposit date:2019-09-13
Release date:2020-09-30
Last modified:2021-04-14
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Molecular Characterization of a Novel Lytic Enzyme LysC from Clostridium intestinale URNW and Its Antibacterial Activity Mediated by Positively Charged N -Terminal Extension.
Int J Mol Sci, 21, 2020
6N0B
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BU of 6n0b by Molmil
Structure of GTPase Domain of Human Septin 7 at High Resolution
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Septin-7
Authors:Brognara, G, Pereira, H.M, Brandao-Neto, J, Araujo, A.P.U, Garratt, R.C.
Deposit date:2018-11-07
Release date:2019-05-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.739 Å)
Cite:Revisiting SEPT7 and the slippage of beta-strands in the septin family.
J.Struct.Biol., 207, 2019
8DEK
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BU of 8dek by Molmil
The structure of the glycopeptidase catalytic domain including the linker of Amuc_1438
Descriptor: 1,2-ETHANEDIOL, NPCBM/NEW2 domain-containing protein, SODIUM ION, ...
Authors:Medley, B.J, Boraston, A.B.
Deposit date:2022-06-20
Release date:2022-08-31
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A previously uncharacterized O-glycopeptidase from Akkermansia muciniphila requires the Tn-antigen for cleavage of the peptide bond.
J.Biol.Chem., 298, 2022
6VLB
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BU of 6vlb by Molmil
Crystal structure of ligand-free UDP-GlcNAc 2-epimerase from Neisseria meningitidis
Descriptor: 1,2-ETHANEDIOL, SODIUM ION, UDP-N-acetylglucosamine 2-epimerase
Authors:Fisher, A.J, Hurlburt, N.K.
Deposit date:2020-01-23
Release date:2020-11-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural characterization of a nonhydrolyzing UDP-GlcNAc 2-epimerase from Neisseria meningitidis serogroup A.
Acta Crystallogr.,Sect.F, 76, 2020
8A7E
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BU of 8a7e by Molmil
PAPP-A dimer in complex with its inhibitor STC2
Descriptor: CALCIUM ION, Pappalysin-1, Stanniocalcin-2, ...
Authors:Kobbero, S.D, Gajhede, M, Mirza, O.A, Boesen, T, Oxvig, C.
Deposit date:2022-06-20
Release date:2022-11-02
Method:ELECTRON MICROSCOPY (5.02 Å)
Cite:Structure of the proteolytic enzyme PAPP-A with the endogenous inhibitor stanniocalcin-2 reveals its inhibitory mechanism.
Nat Commun, 13, 2022
8DF2
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BU of 8df2 by Molmil
The structure of the 'ALT' construct of the Amuc_1438 glycopeptidase
Descriptor: CALCIUM ION, NPCBM/NEW2 domain-containing protein, SODIUM ION, ...
Authors:Medley, B.J, Boraston, A.B.
Deposit date:2022-06-21
Release date:2022-08-31
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:A previously uncharacterized O-glycopeptidase from Akkermansia muciniphila requires the Tn-antigen for cleavage of the peptide bond.
J.Biol.Chem., 298, 2022
6SVF
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BU of 6svf by Molmil
Crystal structure of the P235GK mutant of ArgBP from T. maritima
Descriptor: ARGININE, Amino acid ABC transporter, periplasmic amino acid-binding protein
Authors:Vitagliano, L, Berisio, R, Esposito, L, Balasco, N, Smaldone, G, Ruggiero, A.
Deposit date:2019-09-18
Release date:2019-11-20
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The non-swapped monomeric structure of the arginine-binding protein from Thermotoga maritima.
Acta Crystallogr.,Sect.F, 75, 2019
7ZWT
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BU of 7zwt by Molmil
Crystal structure of human BCL6 BTB domain in complex with compound 14
Descriptor: 1,2-ETHANEDIOL, 2-[(2-chlorophenyl)amino]-~{N}-(pyridin-2-ylmethyl)-1,3-thiazole-4-carboxamide, B-cell lymphoma 6 protein, ...
Authors:Gunnell, E.A, Le Bihan, Y.-V, van Montfort, R.L.M.
Deposit date:2022-05-19
Release date:2022-11-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Discovering cell-active BCL6 inhibitors: effectively combining biochemical HTS with multiple biophysical techniques, X-ray crystallography and cell-based assays.
Sci Rep, 12, 2022
6YUN
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BU of 6yun by Molmil
1.45 Angstrom Resolution Crystal Structure of C-terminal Dimerization Domain of Nucleocapsid Phosphoprotein from SARS-CoV-2
Descriptor: Nucleoprotein
Authors:Zinzula, L, Basquin, J, Nagy, I, Bracher, A.
Deposit date:2020-04-27
Release date:2020-05-20
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:High-resolution structure and biophysical characterization of the nucleocapsid phosphoprotein dimerization domain from the Covid-19 severe acute respiratory syndrome coronavirus 2.
Biochem.Biophys.Res.Commun., 538, 2021
6N43
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BU of 6n43 by Molmil
Crystal structure of cysteine, nitric oxide-bound ferrous form of the crosslinked human cysteine dioxygenase in the anaerobic condition
Descriptor: CYSTEINE, Cysteine dioxygenase type 1, FE (III) ION, ...
Authors:Liu, A, Li, J.
Deposit date:2018-11-16
Release date:2019-04-17
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.289 Å)
Cite:Probing the Cys-Tyr Cofactor Biogenesis in Cysteine Dioxygenase by the Genetic Incorporation of Fluorotyrosine.
Biochemistry, 58, 2019
6T14
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BU of 6t14 by Molmil
Native structure of mosquitocidal Cyt1A protoxin obtained by Serial Femtosecond Crystallography on in vivo grown crystals at pH 7
Descriptor: SODIUM ION, Type-1Aa cytolytic delta-endotoxin
Authors:Tetreau, G, Banneville, A.S, Andreeva, E, Brewster, A.S, Hunter, M.S, Sierra, R.G, Young, I.D, Boutet, S, Coquelle, N, Cascio, D, Sawaya, M.R, Sauter, N.K, Colletier, J.P.
Deposit date:2019-10-03
Release date:2020-10-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Serial femtosecond crystallography on in vivo-grown crystals drives elucidation of mosquitocidal Cyt1Aa bioactivation cascade.
Nat Commun, 11, 2020

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