Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 89111 results

5X54
DownloadVisualize
BU of 5x54 by Molmil
Crystal structure of the Keap1 Kelch domain in complex with a tetrapeptide
Descriptor: ACE-GLU-TRP-TRP-TRP, ACETATE ION, Kelch-like ECH-associated protein 1
Authors:Sogabe, S, Kadotani, A, Lane, W, Snell, G.
Deposit date:2017-02-14
Release date:2017-03-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Discovery of a Kelch-like ECH-associated protein 1-inhibitory tetrapeptide and its structural characterization
Biochem. Biophys. Res. Commun., 486, 2017
6EVF
DownloadVisualize
BU of 6evf by Molmil
Structure of E285D S. cerevisiae Fdc1 with prFMN in the hydroxylated form
Descriptor: 1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-y l)-D-ribitol, Ferulic acid decarboxylase 1, MANGANESE (II) ION, ...
Authors:Bailey, S.S, David, L, Payne, K.A.P.
Deposit date:2017-11-01
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:The role of conserved residues in Fdc decarboxylase in prenylated flavin mononucleotide oxidative maturation, cofactor isomerization, and catalysis.
J. Biol. Chem., 293, 2018
8AVU
DownloadVisualize
BU of 8avu by Molmil
Racemic protein crystal structure of aureocin A53 from Staphylococcus aureus in the dimeric state
Descriptor: 1,2-ETHANEDIOL, Bacteriocin aureocin A53, D-Aureocin A53, ...
Authors:Lander, A.J, Baumann, P, Rizkallah, P, Jin, Y, Luk, L.Y.P.
Deposit date:2022-08-26
Release date:2023-07-26
Method:X-RAY DIFFRACTION (0.89 Å)
Cite:Roles of inter- and intramolecular tryptophan interactions in membrane-active proteins revealed by racemic protein crystallography.
Commun Chem, 6, 2023
6V6H
DownloadVisualize
BU of 6v6h by Molmil
Crystal structure of histidine ammonia-lyase from Trypanosoma cruzi
Descriptor: Histidine ammonia-lyase
Authors:Miranda, R.R, Silva, M, Barison, M.J, Silber, A.M, Iulek, J.
Deposit date:2019-12-05
Release date:2020-06-10
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal structure of histidine ammonia-lyase from Trypanosoma cruzi.
Biochimie, 175, 2020
4YDK
DownloadVisualize
BU of 4ydk by Molmil
Crystal structure of broadly and potently neutralizing antibody C38-VRC16.01 in complex with HIV-1 clade AE strain 93TH057 gp120
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, ...
Authors:Zhou, T, Moquin, S, Zheng, A, Kwong, P.D.
Deposit date:2015-02-22
Release date:2015-06-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.051 Å)
Cite:Structural Repertoire of HIV-1-Neutralizing Antibodies Targeting the CD4 Supersite in 14 Donors.
Cell, 161, 2015
6F84
DownloadVisualize
BU of 6f84 by Molmil
AKR1B1 at 2.55 MGy radiation dose.
Descriptor: Aldose reductase, CITRIC ACID, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Castellvi, A, Juanhuix, J.
Deposit date:2017-12-12
Release date:2019-03-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.09 Å)
Cite:Efficacy of aldose reductase inhibitors is affected by oxidative stress induced under X-ray irradiation.
Sci Rep, 9, 2019
8AVR
DownloadVisualize
BU of 8avr by Molmil
Racemic protein crystal structure of aureocin A53 from Staphylococcus aureus in the presence of sulfate
Descriptor: 1,2-ETHANEDIOL, Bacteriocin aureocin A53, D-Aureocin A53, ...
Authors:Lander, A.J, Baumann, P, Rizkallah, P, Jin, Y, Luk, L.Y.P.
Deposit date:2022-08-26
Release date:2023-07-26
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:Roles of inter- and intramolecular tryptophan interactions in membrane-active proteins revealed by racemic protein crystallography.
Commun Chem, 6, 2023
8AVS
DownloadVisualize
BU of 8avs by Molmil
Racemic protein crystal structure of aureocin A53 from Staphylococcus aureus in the presence of citrate and acetate
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Bacteriocin aureocin A53, ...
Authors:Lander, A.J, Baumann, P, Rizkallah, P, Jin, Y, Luk, L.Y.P.
Deposit date:2022-08-26
Release date:2023-07-26
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:Roles of inter- and intramolecular tryptophan interactions in membrane-active proteins revealed by racemic protein crystallography.
Commun Chem, 6, 2023
3LG1
DownloadVisualize
BU of 3lg1 by Molmil
Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase reduced by sodium borohydride (in complex with sulfite)
Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, CALCIUM ION, Eight-heme nitrite reductase, ...
Authors:Trofimov, A.A, Polyakov, K.M, Boyko, K.M, Filimonenkov, A.A, Dorovatovsky, P.V, Tikhonova, T.V, Popov, V.O.
Deposit date:2010-01-19
Release date:2010-12-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Covalent modifications of the catalytic tyrosine in octahaem cytochrome c nitrite reductase and their effect on the enzyme activity.
Acta Crystallogr.,Sect.D, 68, 2012
6EW8
DownloadVisualize
BU of 6ew8 by Molmil
Crystal structure of the BCL6 BTB domain in complex with anilinopyrimidine ligand
Descriptor: B-cell lymphoma 6 protein, CHLORIDE ION, anilinopyrimidine ligand
Authors:Robb, G, Ferguson, A, Hargreaves, D.
Deposit date:2017-11-03
Release date:2018-10-24
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Development of a Novel B-Cell Lymphoma 6 (BCL6) PROTAC To Provide Insight into Small Molecule Targeting of BCL6.
ACS Chem. Biol., 13, 2018
7RRW
DownloadVisualize
BU of 7rrw by Molmil
Monomeric CRM197 expressed in E. coli
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Diphtheria toxin
Authors:Gallagher, D.T, Lees, A.
Deposit date:2021-08-10
Release date:2022-11-09
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Monomeric crystal structure of the vaccine carrier protein CRM 197 and implications for vaccine development.
Acta Crystallogr.,Sect.F, 79, 2023
7UIZ
DownloadVisualize
BU of 7uiz by Molmil
ClpAP complex bound to ClpS N-terminal extension, class IIc
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent Clp protease ATP-binding subunit ClpA, ATP-dependent Clp protease adapter protein ClpS, ...
Authors:Kim, S, Fei, X, Sauer, R.T, Baker, T.A.
Deposit date:2022-03-29
Release date:2022-11-09
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.24 Å)
Cite:AAA+ protease-adaptor structures reveal altered conformations and ring specialization.
Nat.Struct.Mol.Biol., 29, 2022
8U0R
DownloadVisualize
BU of 8u0r by Molmil
The crystal structure of protein A21, a component of the conserved poxvirus entry-fusion complex
Descriptor: 1,2-ETHANEDIOL, 1,3-PROPANDIOL, 2-(2-METHOXYETHOXY)ETHANOL, ...
Authors:Diesterbeck, U, Gittis, A.G, Garboczi, D.N, Moss, B.
Deposit date:2023-08-29
Release date:2024-09-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The crystal structure of protein A21, a component of the conserved poxvirus entry-fusion complex
To Be Published
7MA6
DownloadVisualize
BU of 7ma6 by Molmil
HIV-1 Protease (I84V) in Complex with UMass5
Descriptor: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(1S,2R)-3-{(1,3-benzothiazol-6-ylsulfonyl)[(2S)-2-methylbutyl]amino}-1-benzyl-2-hydroxypropyl]carbamate, Protease, SULFATE ION
Authors:Lockbaum, G.J, Schiffer, C.A.
Deposit date:2021-03-31
Release date:2022-11-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.995 Å)
Cite:HIV-1 Protease (I84V) in Complex with UMass5
To Be Published
7MA9
DownloadVisualize
BU of 7ma9 by Molmil
HIV-1 Protease (I84V) in Complex with UMass9
Descriptor: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl {(1S,2R)-3-[(1,3-benzodioxol-5-ylsulfonyl)(2-ethylbutyl)amino]-1-benzyl-2-hydroxypropyl}carbamate, Protease, SULFATE ION
Authors:Lockbaum, G.J, Schiffer, C.A.
Deposit date:2021-03-31
Release date:2022-11-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:HIV-1 Protease (I84V) in Complex with UMass9
To Be Published
7JVI
DownloadVisualize
BU of 7jvi by Molmil
Crystal structure of a beta-helix domain retrieved from capybara gut metagenome
Descriptor: Beta-helix domain, CALCIUM ION
Authors:Martins, M.P, Genoroso, W.C, Domingues, M.N, Persinoti, G.F, Morais, M.A.B, Murakami, M.T.
Deposit date:2020-08-21
Release date:2021-09-08
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Gut microbiome of the largest living rodent harbors unprecedented enzymatic systems to degrade plant polysaccharides.
Nat Commun, 13, 2022
4R40
DownloadVisualize
BU of 4r40 by Molmil
Crystal Structure of TolB/Pal complex from Yersinia pestis.
Descriptor: FORMIC ACID, GLYCEROL, Peptidoglycan-associated lipoprotein, ...
Authors:Maltseva, N, Kim, Y, Osipiuk, J, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2014-08-18
Release date:2014-09-03
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.496 Å)
Cite:Crystal Structure of TolB/Pal complex from Yersinia pestis.
To be Published
7UIX
DownloadVisualize
BU of 7uix by Molmil
ClpAP complex bound to ClpS N-terminal extension, class I
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent Clp protease ATP-binding subunit ClpA, ATP-dependent Clp protease adapter protein ClpS, ...
Authors:Kim, S, Fei, X, Sauer, R.T, Baker, T.A.
Deposit date:2022-03-29
Release date:2022-11-09
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.24 Å)
Cite:AAA+ protease-adaptor structures reveal altered conformations and ring specialization.
Nat.Struct.Mol.Biol., 29, 2022
7ASU
DownloadVisualize
BU of 7asu by Molmil
Crystal structure of tWHD1 of Rpc5 subunit of human RNA Polymerase III
Descriptor: DNA-directed RNA polymerase III subunit RPC5, ZINC ION
Authors:Vannini, A, Abascal-Palacios, G, Ramsay, E.P.
Deposit date:2020-10-28
Release date:2020-12-30
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Structure of human RNA polymerase III.
Nat Commun, 11, 2020
7B2R
DownloadVisualize
BU of 7b2r by Molmil
Crystal structure of NHL domain of TRIM2
Descriptor: 1,2-ETHANEDIOL, Tripartite motif-containing protein 2
Authors:Chaikuad, A, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2020-11-27
Release date:2021-01-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of NHL domain of TRIM2
To Be Published
8DMX
DownloadVisualize
BU of 8dmx by Molmil
Cryo-EM structure of skeletal muscle alpha-actin
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Arora, A.S, Huang, H.L, Heissler, S.M, Chinthalapudi, K.
Deposit date:2022-07-08
Release date:2023-04-12
Method:ELECTRON MICROSCOPY (3.37 Å)
Cite:Structural insights into actin isoforms.
Elife, 12, 2023
5JGY
DownloadVisualize
BU of 5jgy by Molmil
Crystal structure of maize AKR4C13 in P21 space group
Descriptor: 1,2-ETHANEDIOL, 4-{[(2R,3R,4S,5R)-5-({[(R)-{[(R)-{[(2R,3R,4R,5R)-5-(6-amino-9H-purin-9-yl)-3-hydroxy-4-(phosphonooxy)tetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-3,4-dihydroxytetrahydrofuran-2-yl]oxy}butanoic acid (non-preferred name), Aldose reductase, ...
Authors:Santos, M.L, Giuseppe, P.O, Kiyota, E, Sousa, S.M, Schmelz, E.A, Yunes, J.A, Koch, K.E, Murakami, M.T, Aparicio, R.
Deposit date:2016-04-20
Release date:2017-05-03
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of maize AKR4C13 in P21 space group
To Be Published
6SDP
DownloadVisualize
BU of 6sdp by Molmil
Trypanosoma cruzi farnesyl diphosphate synthase in complex with fragment 4np
Descriptor: Farnesyl diphosphate synthase, P-NITROPHENOL, SULFATE ION, ...
Authors:Magari, F, Heine, A, Klebe, G.
Deposit date:2019-07-29
Release date:2020-08-26
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Trypanosoma cruzi farnesyl diphosphate synthase in complex with fragment 4np
To Be Published
8U1Z
DownloadVisualize
BU of 8u1z by Molmil
Crystal structure of the Fis1 cytosolic domain bound to a peptide inhibitor
Descriptor: Mitochondrial fission 1 protein, inhibitor peptide
Authors:Nolden, K.A, Peterson, F.C, Hill, R.B.
Deposit date:2023-09-04
Release date:2024-09-04
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Novel Fis1 inhibiting peptide reverses microvascular endothelial dysfunction in vessels from humans with type 2 diabetes
To Be Published
4DR6
DownloadVisualize
BU of 4dr6 by Molmil
Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position and streptomycin bound
Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
Authors:Demirci, H, Murphy IV, F, Murphy, E, Gregory, S.T, Dahlberg, A.E, Jogl, G.
Deposit date:2012-02-16
Release date:2012-11-14
Last modified:2013-01-30
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:A structural basis for streptomycin-induced misreading of the genetic code.
Nat Commun, 4, 2013

224931

건을2024-09-11부터공개중

PDB statisticsPDBj update infoContact PDBjnumon