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1C1F
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LIGAND-FREE CONGERIN I
分子名称: PROTEIN (CONGERIN I)
著者Shirai, T, Mitsuyama, C, Niwa, Y, Matsui, Y, Hotta, H, Yamane, T, Kamiya, H, Ishii, C, Ogawa, T, Muramoto, K.
登録日1999-03-03
公開日1999-10-08
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献High-resolution structure of the conger eel galectin, congerin I, in lactose-liganded and ligand-free forms: emergence of a new structure class by accelerated evolution.
Structure Fold.Des., 7, 1999
1C1L
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LACTOSE-LIGANDED CONGERIN I
分子名称: PROTEIN (CONGERIN I), beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
著者Shirai, T, Mitsuyama, C, Niwa, Y, Matsui, Y, Hotta, H, Yamane, T, Kamiya, H, Ishii, C, Ogawa, T, Muramoto, K.
登録日1999-03-03
公開日1999-10-08
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献High-resolution structure of the conger eel galectin, congerin I, in lactose-liganded and ligand-free forms: emergence of a new structure class by accelerated evolution.
Structure Fold.Des., 7, 1999
1CH4
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MODULE-SUBSTITUTED CHIMERA HEMOGLOBIN BETA-ALPHA (F133V)
分子名称: CARBON MONOXIDE, MODULE-SUBSTITUTED CHIMERA HEMOGLOBIN BETA-ALPHA, PROTOPORPHYRIN IX CONTAINING FE
著者Shirai, T, Fujikake, M, Yamane, T, Inaba, K, Ishimori, K, Morishima, I.
登録日1998-06-11
公開日1999-04-27
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of a protein with an artificial exon-shuffling, module M4-substituted chimera hemoglobin beta alpha, at 2.5 A resolution.
J.Mol.Biol., 287, 1999
1G01
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ALKALINE CELLULASE K CATALYTIC DOMAIN
分子名称: ACETIC ACID, CADMIUM ION, ENDOGLUCANASE
著者Shirai, T, Ishida, H, Noda, J, Yamane, T, Ozaki, K, Hakamada, Y, Ito, S.
登録日2000-10-05
公開日2001-08-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of alkaline cellulase K: insight into the alkaline adaptation of an industrial enzyme.
J.Mol.Biol., 310, 2001
1G0C
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ALKALINE CELLULASE K CATALYTIC DOMAIN-CELLOBIOSE COMPLEX
分子名称: ACETIC ACID, CADMIUM ION, ENDOGLUCANASE, ...
著者Shirai, T, Ishida, H, Noda, J, Yamane, T, Ozaki, K, Hakamada, Y, Ito, S.
登録日2000-10-05
公開日2001-08-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of alkaline cellulase K: insight into the alkaline adaptation of an industrial enzyme.
J.Mol.Biol., 310, 2001
1IS4
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LACTOSE-LIGANDED CONGERIN II
分子名称: CONGERIN II, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
著者Shirai, T, Matsui, Y, Shionyu-Mitsuyama, C, Yamane, T, Kamiya, H, Ishii, C, Ogawa, T, Muramoto, K.
登録日2001-11-12
公開日2002-09-18
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structure of a Conger Eel Galectin (Congerin II) at 1.45 A Resolution: Implication for the Accelerated Evolution of a New Ligand-Binding Site Following Gene Duplication
J.Mol.Biol., 321, 2002
1IS3
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LACTOSE AND MES-LIGANDED CONGERIN II
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CONGERIN II, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
著者Shirai, T, Matsui, Y, Shionyu-Mitsuyama, C, Yamane, T, Kamiya, H, Ishii, C, Ogawa, T, Muramoto, K.
登録日2001-11-12
公開日2002-09-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Crystal structure of a conger eel galectin (congerin II) at 1.45 A resolution: Implication for the accelerated evolution of a new ligand-binding site following gene duplication
J.MOL.BIOL., 321, 2002
1IS5
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Ligand free Congerin II
分子名称: Congerin II
著者Shirai, T, Matsui, Y, Shionyu-Mitsuyama, C, Yamane, T, Kamiya, H, Ishii, C, Ogawa, T, Muramoto, K.
登録日2001-11-12
公開日2002-09-18
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of a conger eel galectin (congerin II) at 1.45 A resolution: Implication for the accelerated evolution of a new ligand-binding site following gene duplication
J.MOL.BIOL., 321, 2002
1IS6
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MES-Liganded Congerin II
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Congerin II
著者Shirai, T, Matsui, Y, Shionyu-Mitsuyama, C, Yamane, T, Kamiya, H, Ishii, C, Ogawa, T, Muramoto, K.
登録日2001-11-12
公開日2002-09-18
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of a conger eel galectin (congerin II) at 1.45 A resolution: Implication for the accelerated evolution of a new ligand-binding site following gene duplication
J.MOL.BIOL., 321, 2002
1WSD
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Alkaline M-protease form I crystal structure
分子名称: CALCIUM ION, M-protease, SULFATE ION
著者Shirai, T, Suzuki, A, Yamane, T, Ashida, T, Kobayashi, T, Hitomi, J, Ito, S.
登録日2004-11-05
公開日2004-11-16
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献High-resolution crystal structure of M-protease: phylogeny aided analysis of the high-alkaline adaptation mechanism
Protein Eng., 10, 1997
2ZE0
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Alpha-glucosidase GSJ
分子名称: Alpha-glucosidase, CALCIUM ION
著者Shirai, T, Hung, V.S, Morinaka, K, Kobayashi, T, Ito, S.
登録日2007-12-04
公開日2007-12-18
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of GH13 alpha-glucosidase GSJ from one of the deepest sea bacteria
Proteins, 73, 2008
2ZX4
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Rhamnose-binding lectin CSL3
分子名称: CSL3, PHOSPHATE ION, alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose, ...
著者Shirai, T, Watababe, Y, Lee, M, Ogawa, T, Muramoto, K.
登録日2008-12-19
公開日2009-06-30
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structure of rhamnose-binding lectin CSL3: unique pseudo-tetrameric architecture of a pattern recognition protein
J.Mol.Biol., 391, 2009
2ZX3
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Rhamnose-binding lectin CSL3
分子名称: CSL3, PHOSPHATE ION, alpha-D-galactopyranose-(1-6)-beta-D-glucopyranose
著者Shirai, T, Watababe, Y, Lee, M, Ogawa, T, Muramoto, K.
登録日2008-12-19
公開日2009-06-30
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of rhamnose-binding lectin CSL3: unique pseudo-tetrameric architecture of a pattern recognition protein
J.Mol.Biol., 391, 2009
2ZX0
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Rhamnose-binding lectin CSL3
分子名称: CSL3, GLYCEROL, PHOSPHATE ION
著者Shirai, T, Watababe, Y, Lee, M, Ogawa, T, Muramoto, K.
登録日2008-12-19
公開日2009-06-30
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of rhamnose-binding lectin CSL3: unique pseudo-tetrameric architecture of a pattern recognition protein
J.Mol.Biol., 391, 2009
2ZX2
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Rhamnose-binding lectin CSL3
分子名称: CSL3, PHOSPHATE ION, alpha-L-rhamnopyranose
著者Shirai, T, Watababe, Y, Lee, M, Ogawa, T, Muramoto, K.
登録日2008-12-19
公開日2009-06-30
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure of rhamnose-binding lectin CSL3: unique pseudo-tetrameric architecture of a pattern recognition protein
J.Mol.Biol., 391, 2009
2ZX1
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Rhamnose-binding lectin CSL3
分子名称: CSL3, PHOSPHATE ION
著者Shirai, T, Watababe, Y, Lee, M, Ogawa, T, Muramoto, K.
登録日2008-12-19
公開日2009-06-30
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of rhamnose-binding lectin CSL3: unique pseudo-tetrameric architecture of a pattern recognition protein
J.Mol.Biol., 391, 2009
2DIE
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BU of 2die by Molmil
Alkaline alpha-amylase AmyK from Bacillus sp. KSM-1378
分子名称: CALCIUM ION, SODIUM ION, amylase
著者Shirai, T, Igarashi, K, Ozawa, T, Hagihara, H, Kobayashi, T, Ozaki, K, Ito, S.
登録日2006-03-29
公開日2007-02-13
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Ancestral sequence evolutionary trace and crystal structure analyses of alkaline alpha-amylase from Bacillus sp. KSM-1378 to clarify the alkaline adaptation process of proteins
Proteins, 66, 2007
4KMI
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Crystal structure of 4-O-beta-D-mannosyl-D-glucose phosphorylase MGP complexed with PO4
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 4-O-beta-D-mannosyl-D-glucose phosphorylase, PHOSPHATE ION
著者Nakae, S, Ito, S, Higa, M, Senoura, T, Wasaki, J, Hijikata, A, Shionyu, M, Ito, S, Shirai, T.
登録日2013-05-08
公開日2013-09-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure of Novel Enzyme in Mannan Biodegradation Process 4-O-beta-d-Mannosyl-d-Glucose Phosphorylase MGP
J.Mol.Biol., 425, 2013
1JWQ
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Structure of the catalytic domain of CwlV, N-acetylmuramoyl-L-alanine amidase from Bacillus(Paenibacillus) polymyxa var.colistinus
分子名称: N-ACETYLMURAMOYL-L-ALANINE AMIDASE CwlV, ZINC ION
著者Yamane, T, Koyama, Y, Nojiri, Y, Hikage, T, Akita, M, Suzuki, A, Shirai, T, Ise, F, Shida, T, Sekiguchi, J.
登録日2001-09-05
公開日2003-11-18
最終更新日2022-12-21
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The Structure of the catalytic domain of N-acetylmuramoyl-L-alanine amidase, a cell wall hydrolase from Bacillus polymyxa var.colistinus and its resemblance to the structure of carboxypeptidases
To be Published
7DDR
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Ancestral myoglobin aMbSp of Puijila Darwini relative (imidazol ligand)
分子名称: Ancestral myoglobin aMbSp, IMIDAZOLE, PROTOPORPHYRIN IX CONTAINING FE
著者Isogai, Y, Imamura, H, Nakae, S, Sumi, T, Takahashi, K, Shirai, T.
登録日2020-10-29
公開日2021-09-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Common and unique strategies of myoglobin evolution for deep-sea adaptation of diving mammals.
Iscience, 24, 2021
7DDS
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Ancestral myoglobin aMbSp of Puijila Darwini relative
分子名称: Ancestral myoglobin aMbSp, PROTOPORPHYRIN IX CONTAINING FE
著者Isogai, Y, Imamura, H, Nakae, S, Sumi, T, Takahashi, K, Shirai, T.
登録日2020-10-29
公開日2021-09-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Common and unique strategies of myoglobin evolution for deep-sea adaptation of diving mammals.
Iscience, 24, 2021
7DDT
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Ancestral myoglobin aMbSe of Enaliarctos relative (imidazol ligand)
分子名称: Ancestral myoglobin aMbSe, IMIDAZOLE, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Isogai, Y, Imamura, H, Nakae, S, Sumi, T, Takahashi, K, Shirai, T.
登録日2020-10-29
公開日2021-09-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Common and unique strategies of myoglobin evolution for deep-sea adaptation of diving mammals.
Iscience, 24, 2021
7DDU
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Elephant seal myoglobin esMb
分子名称: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
著者Isogai, Y, Imamura, H, Nakae, S, Sumi, T, Takahashi, K, Shirai, T.
登録日2020-10-29
公開日2021-09-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Common and unique strategies of myoglobin evolution for deep-sea adaptation of diving mammals.
Iscience, 24, 2021
1WLC
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Congerin II Y16S/T88I double mutant
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Congerin II
著者Shionyu-Mitsuyama, C, Ito, Y, Konno, A, Miwa, Y, Ogawa, T, Muramoto, K, Shirai, T.
登録日2004-06-22
公開日2005-06-07
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献In vitro evolutionary thermostabilization of congerin II: a limited reproduction of natural protein evolution by artificial selection pressure
J.Mol.Biol., 347, 2005
1WLD
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Congerin II T88I single mutant
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CONGERIN II, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
著者Shionyu-Mitsuyama, C, Ito, Y, Konno, A, Miwa, Y, Ogawa, T, Muramoto, K, Shirai, T.
登録日2004-06-22
公開日2005-06-07
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献In vitro evolutionary thermostabilization of congerin II: a limited reproduction of natural protein evolution by artificial selection pressure
J.Mol.Biol., 347, 2005

 

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