Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1QKK
DownloadVisualize
BU of 1qkk by Molmil
Crystal structure of the receiver domain and linker region of DctD from Sinorhizobium meliloti
分子名称: C4-DICARBOXYLATE TRANSPORT TRANSCRIPTIONAL REGULATORY PROTEIN
著者Meyer, M.G, Park, S, Zeringue, L, Staley, M, Mckinstry, M, Kaufman, R.I, Zhang, H, Yan, D, Yennawar, N, Farber, G.K, Nixon, B.T.
登録日1999-07-23
公開日2000-07-30
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献A dimeric two-component receiver domain inhibits the sigma54-dependent ATPase in DctD.
Faseb J., 15, 2001
2NC5
DownloadVisualize
BU of 2nc5 by Molmil
Solution Structure of N-Xylosylated Pin1 WW Domain
分子名称: Pin1 WW Domain, beta-D-xylopyranose
著者Hsu, C, Park, S, Mortenson, D.E, Foley, B, Wang, X, Woods, R.J, Case, D.A, Powers, E.T, Wong, C, Dyson, H, Kelly, J.W.
登録日2016-03-20
公開日2016-06-08
最終更新日2020-07-29
実験手法SOLUTION NMR
主引用文献The Dependence of Carbohydrate-Aromatic Interaction Strengths on the Structure of the Carbohydrate.
J.Am.Chem.Soc., 138, 2016
2NC4
DownloadVisualize
BU of 2nc4 by Molmil
Solution Structure of N-Galactosylated Pin1 WW Domain
分子名称: Pin1 WW Domain, beta-D-galactopyranose
著者Hsu, C, Park, S, Mortenson, D.E, Foley, B, Wang, X, Woods, R.J, Case, D.A, Powers, E.T, Wong, C, Dyson, H, Kelly, J.W.
登録日2016-03-20
公開日2016-06-08
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献The Dependence of Carbohydrate-Aromatic Interaction Strengths on the Structure of the Carbohydrate.
J.Am.Chem.Soc., 138, 2016
2NC6
DownloadVisualize
BU of 2nc6 by Molmil
Solution Structure of N-L-idosylated Pin1 WW Domain
分子名称: Pin1 WW Domain, beta-L-idopyranose
著者Hsu, C, Park, S, Mortenson, D.E, Foley, B, Wang, X, Woods, R.J, Case, D.A, Powers, E.T, Wong, C, Dyson, H, Kelly, J.W.
登録日2016-03-20
公開日2016-06-08
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献The Dependence of Carbohydrate-Aromatic Interaction Strengths on the Structure of the Carbohydrate.
J.Am.Chem.Soc., 138, 2016
2NC3
DownloadVisualize
BU of 2nc3 by Molmil
Solution Structure of N-Allosylated Pin1 WW Domain
分子名称: Pin1 WW Domain, beta-D-allopyranose
著者Hsu, C, Park, S, Mortenson, D.E, Foley, B, Wang, X, Woods, R.J, Case, D.A, Powers, E.T, Wong, C, Dyson, H, Kelly, J.W.
登録日2016-03-20
公開日2016-06-08
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献The Dependence of Carbohydrate-Aromatic Interaction Strengths on the Structure of the Carbohydrate.
J.Am.Chem.Soc., 138, 2016
1VA4
DownloadVisualize
BU of 1va4 by Molmil
Pseudomonas fluorescens aryl esterase
分子名称: Arylesterase, GLYCEROL
著者Cheeseman, J.D, Tocilj, A, Park, S, Schrag, J.D, Kazlauskas, R.J.
登録日2004-02-11
公開日2004-07-06
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.804 Å)
主引用文献Structure of an aryl esterase from Pseudomonas fluorescens.
Acta Crystallogr.,Sect.D, 60, 2004
2AIV
DownloadVisualize
BU of 2aiv by Molmil
Multiple conformations in the ligand-binding site of the yeast nuclear pore targeting domain of NUP116P
分子名称: fragment of Nucleoporin NUP116/NSP116
著者Robinson, M.A, Park, S, Sun, Z.-Y.J, Silver, P, Wagner, G, Hogle, J.
登録日2005-08-01
公開日2005-08-16
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Multiple Conformations in the Ligand-binding Site of the Yeast Nuclear Pore-targeting Domain of Nup116p
J.Biol.Chem., 280, 2005
4JPO
DownloadVisualize
BU of 4jpo by Molmil
5A resolution structure of Proteasome Assembly Chaperone Hsm3 in complex with a C-terminal fragment of Rpt1
分子名称: 26S protease regulatory subunit 7 homolog, DNA mismatch repair protein HSM3
著者Lovell, S, Battaile, K.P, Singh, R, Roelofs, J.
登録日2013-03-19
公開日2013-04-10
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (5 Å)
主引用文献Reconfiguration of the proteasome during chaperone-mediated assembly.
Nature, 497, 2013
6LXX
DownloadVisualize
BU of 6lxx by Molmil
Frog EPDR1 with an Ir atom
分子名称: CALCIUM ION, CHLORIDE ION, Ependymin-related 1, ...
著者Park, S, Park, J.
登録日2020-02-12
公開日2021-02-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献A Single Soaked Iridium (IV) Ion Observed in the Frog Ependymin-Related Protein.
Bull.Korean Chem.Soc., 41, 2020
2JPX
DownloadVisualize
BU of 2jpx by Molmil
A18H Vpu TM structure in lipid bilayers
分子名称: Vpu protein
著者Park, S, Opella, S.J.
登録日2007-05-25
公開日2007-11-13
最終更新日2023-12-20
実験手法SOLUTION NMR
主引用文献Conformational changes induced by a single amino acid substitution in the trans-membrane domain of Vpu: implications for HIV-1 susceptibility to channel blocking drugs
Protein Sci., 16, 2007
2KLV
DownloadVisualize
BU of 2klv by Molmil
Membrane-bound structure of the Pf1 major coat protein in DHPC micelle
分子名称: Capsid protein G8P
著者Park, S, Son, W, Mukhopadhyay, R, Valafar, H, Opella, S.J.
登録日2009-07-08
公開日2009-10-06
最終更新日2022-03-16
実験手法SOLUTION NMR
主引用文献Phage-induced alignment of membrane proteins enables the measurement and structural analysis of residual dipolar couplings with dipolar waves and lambda-maps.
J.Am.Chem.Soc., 131, 2009
2KSJ
DownloadVisualize
BU of 2ksj by Molmil
Structure and Dynamics of the Membrane-bound form of Pf1 Coat Protein: Implications for Structural Rearrangement During Virus Assembly
分子名称: Capsid protein G8P
著者Park, S, Marassi, F, Black, D, Opella, S.J.
登録日2010-01-05
公開日2010-11-10
最終更新日2024-05-01
実験手法SOLID-STATE NMR, SOLUTION NMR
主引用文献Structure and dynamics of the membrane-bound form of Pf1 coat protein: implications of structural rearrangement for virus assembly.
Biophys.J., 99, 2010
2LNL
DownloadVisualize
BU of 2lnl by Molmil
Structure of human CXCR1 in phospholipid bilayers
分子名称: C-X-C chemokine receptor type 1
著者Park, S, Das, B.B, Casagrande, F, Nothnagel, H, Chu, M, Kiefer, H, Maier, K, De Angelis, A, Marassi, F.M, Opella, S.J.
登録日2011-12-31
公開日2012-10-17
最終更新日2016-04-27
実験手法SOLID-STATE NMR
主引用文献Structure of the chemokine receptor CXCR1 in phospholipid bilayers.
Nature, 491, 2012
6AGQ
DownloadVisualize
BU of 6agq by Molmil
Acetyl xylan esterase from Paenibacillus sp. R4
分子名称: ZINC ION, acetyl xylan esterase
著者Park, S, Lee, C.W, Lee, J.H.
登録日2018-08-13
公開日2018-10-10
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure and functional characterization of a cold-active acetyl xylan esterase (PbAcE) from psychrophilic soil microbe Paenibacillus sp.
PLoS ONE, 13, 2018
4URP
DownloadVisualize
BU of 4urp by Molmil
The Crystal structure of Nitroreductase from Saccharomyces cerevisiae
分子名称: FATTY ACID REPRESSION MUTANT PROTEIN 2
著者Song, H.-N, Woo, E.-J, Bang, S.-Y, Jung, D.-G, Park, S.-G.
登録日2014-07-01
公開日2015-04-29
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.991 Å)
主引用文献Crystal Structure of the Fungal Nitroreductase Frm2 from Saccharomyces Cerevisiae.
Protein Sci., 24, 2015
7QLL
DownloadVisualize
BU of 7qll by Molmil
rsKiiro Thermal annealing at 290K of 200K Cis intermediate
分子名称: GLYCEROL, SULFATE ION, rsKiiro
著者van Thor, J.J, Baxter, J.M.
登録日2021-12-20
公開日2023-07-05
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.324 Å)
主引用文献Optical control of ultrafast structural dynamics in a fluorescent protein.
Nat.Chem., 15, 2023
7QLK
DownloadVisualize
BU of 7qlk by Molmil
Cis structure intermediate of rsKiiro Illuminated at 200 K
分子名称: GLYCEROL, SULFATE ION, rsKiiro
著者van Thor, J.J, Baxter, J.M.
登録日2021-12-20
公開日2023-07-05
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.458 Å)
主引用文献Optical control of ultrafast structural dynamics in a fluorescent protein.
Nat.Chem., 15, 2023
7QLI
DownloadVisualize
BU of 7qli by Molmil
Cis structure of rsKiiro at 290 K
分子名称: GLYCEROL, SULFATE ION, rsKiiro
著者van Thor, J.J, Baxter, J.M.
登録日2021-12-20
公開日2023-07-05
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.155 Å)
主引用文献Optical control of ultrafast structural dynamics in a fluorescent protein.
Nat.Chem., 15, 2023
7QLJ
DownloadVisualize
BU of 7qlj by Molmil
Trans structure of rsKiiro Illuminated at 290 K
分子名称: SULFATE ION, rsKiiro
著者van Thor, J.J, Baxter, J.M.
登録日2021-12-20
公開日2022-11-09
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.02 Å)
主引用文献Optical control of ultrafast structural dynamics in a fluorescent protein.
Nat.Chem., 15, 2023
8UTE
DownloadVisualize
BU of 8ute by Molmil
Structure of SARS-Cov2 3CLPro in complex with Compound 27
分子名称: 1,2-ETHANEDIOL, 3C-like proteinase nsp5, methyl {(2S)-1-[(1S,3aR,6aS)-1-{[(2R,3S)-6,6-difluoro-2-hydroxy-1-(methylamino)-1-oxoheptan-3-yl]carbamoyl}hexahydrocyclopenta[c]pyrrol-2(1H)-yl]-3,3-dimethyl-1-oxobutan-2-yl}carbamate
著者Krishnamurthy, H, Zhuang, N, Qiang, D, Wu, Y, Klein, D.J.
登録日2023-10-31
公開日2024-03-06
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Invention of MK-7845, a SARS-CoV-2 3CL Protease Inhibitor Employing a Novel Difluorinated Glutamine Mimic.
J.Med.Chem., 67, 2024
8UPV
DownloadVisualize
BU of 8upv by Molmil
Structure of SARS-Cov2 3CLPro in complex with Compound 33
分子名称: 3C-like proteinase nsp5, methyl {(2S)-1-[(1S,3aR,6aS)-1-{[(2R,3S,6R)-6-fluoro-2-hydroxy-1-(methylamino)-1-oxoheptan-3-yl]carbamoyl}hexahydrocyclopenta[c]pyrrol-2(1H)-yl]-3,3-dimethyl-1-oxobutan-2-yl}carbamate
著者Krishnamurthy, H, Zhuang, N, Qiang, D, Wu, Y, Klein, D.J.
登録日2023-10-23
公開日2024-03-06
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献Invention of MK-7845, a SARS-CoV-2 3CL Protease Inhibitor Employing a Novel Difluorinated Glutamine Mimic.
J.Med.Chem., 67, 2024
8UPS
DownloadVisualize
BU of 8ups by Molmil
Structure of SARS-Cov2 3CLPro in complex with Compound 5
分子名称: (1R,2S,5S)-N-{(2S,3R)-4-amino-3-hydroxy-4-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}-3-[N-(tert-butylcarbamoyl)-3-methyl-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase nsp5, PHOSPHATE ION
著者Wu, Y, Qiang, D, Zhuang, N, Krishnamurthy, H, Klein, D.J.
登録日2023-10-23
公開日2024-03-06
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.44 Å)
主引用文献Invention of MK-7845, a SARS-CoV-2 3CL Protease Inhibitor Employing a Novel Difluorinated Glutamine Mimic.
J.Med.Chem., 67, 2024
8UPW
DownloadVisualize
BU of 8upw by Molmil
Structure of SARS-Cov2 3CLPro in complex with Compound 34
分子名称: 3C-like proteinase nsp5, methyl {(2S)-1-[(1S,3aR,6aS)-1-{[(2R,3S,6S)-6-fluoro-2-hydroxy-1-(methylamino)-1-oxoheptan-3-yl]carbamoyl}hexahydrocyclopenta[c]pyrrol-2(1H)-yl]-3,3-dimethyl-1-oxobutan-2-yl}carbamate
著者Krishnamurthy, H, Zhuang, N, Qiang, D, Wu, Y, Klein, D.J.
登録日2023-10-23
公開日2024-03-06
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.44 Å)
主引用文献Invention of MK-7845, a SARS-CoV-2 3CL Protease Inhibitor Employing a Novel Difluorinated Glutamine Mimic.
J.Med.Chem., 67, 2024
7QLM
DownloadVisualize
BU of 7qlm by Molmil
rsKiiro trans chromophore dark structure by SFX
分子名称: rsKiiro
著者van Thor, J.J.
登録日2021-12-20
公開日2023-09-27
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Optical control of ultrafast structural dynamics in a fluorescent protein.
Nat.Chem., 15, 2023
7QLN
DownloadVisualize
BU of 7qln by Molmil
rsKiiro pump probe structure by TR-SFX
分子名称: rsKiiro
著者van Thor, J.J.
登録日2021-12-20
公開日2023-10-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Optical control of ultrafast structural dynamics in a fluorescent protein.
Nat.Chem., 15, 2023

219869

件を2024-05-15に公開中

PDB statisticsPDBj update infoContact PDBjnumon