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2YX9
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Crystal structure of D298K copper amine oxidase from Arthrobacter globiformis
分子名称: COPPER (II) ION, Phenylethylamine oxidase
著者Murakawa, T, Okajima, T, Yamaguchi, H, Tanizawa, K.
登録日2007-04-25
公開日2008-04-08
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献Trapping of a dopaquinone intermediate in the TPQ cofactor biogenesis in a copper-containing amine oxidase from Arthrobacter globiformis.
J.Am.Chem.Soc., 129, 2007
7WIS
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BU of 7wis by Molmil
Catalytic intermediate structure of N381A mutant of copper amine oxidase from Arthrobacter globiformis
分子名称: COPPER (II) ION, GLYCEROL, PHENYLACETALDEHYDE, ...
著者Murakawa, T, Okajima, T.
登録日2022-01-04
公開日2022-11-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Molecular mechanism of a large conformational change of the quinone cofactor in the semiquinone intermediate of bacterial copper amine oxidase.
Chem Sci, 13, 2022
7WIR
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Holo form of N381A mutant of copper amine oxidase from Arthrobacter globiformis
分子名称: COPPER (II) ION, GLYCEROL, Phenylethylamine oxidase
著者Murakawa, T, Okajima, T.
登録日2022-01-04
公開日2022-11-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Molecular mechanism of a large conformational change of the quinone cofactor in the semiquinone intermediate of bacterial copper amine oxidase.
Chem Sci, 13, 2022
3X3Y
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Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by histamine
分子名称: COPPER (II) ION, GLYCEROL, POTASSIUM ION, ...
著者Okajima, T, Nakanishi, S, Murakawa, T, Kataoka, M, Hayashi, H, Hamaguchi, A, Nakai, T, Kawano, Y, Yamaguchi, H, Tanizawa, K.
登録日2015-03-10
公開日2015-08-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.499 Å)
主引用文献Probing the Catalytic Mechanism of Copper Amine Oxidase from Arthrobacter globiformis with Halide Ions.
J.Biol.Chem., 290, 2015
3X42
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Crystal structure of copper amine oxidase from Arthrobacter globiformis in the presence of sodium bromide
分子名称: BROMIDE ION, COPPER (II) ION, GLYCEROL, ...
著者Okajima, T, Nakanishi, S, Murakawa, T, Kataoka, M, Hayashi, H, Hamaguchi, A, Nakai, T, Kawano, Y, Yamaguchi, H, Tanizawa, K.
登録日2015-03-10
公開日2015-08-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.875 Å)
主引用文献Probing the Catalytic Mechanism of Copper Amine Oxidase from Arthrobacter globiformis with Halide Ions.
J.Biol.Chem., 290, 2015
3X41
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Copper amine oxidase from Arthrobacter globiformis: Product Schiff-base form produced by anaerobic reduction in the presence of sodium bromide
分子名称: BROMIDE ION, COPPER (II) ION, GLYCEROL, ...
著者Okajima, T, Nakanishi, S, Murakawa, T, Kataoka, M, Hayashi, H, Hamaguchi, A, Nakai, T, Kawano, Y, Yamaguchi, H, Tanizawa, K.
登録日2015-03-10
公開日2015-08-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献Probing the Catalytic Mechanism of Copper Amine Oxidase from Arthrobacter globiformis with Halide Ions.
J.Biol.Chem., 290, 2015
3X3X
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Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by phenylethylamine
分子名称: 2-PHENYL-ETHANOL, COPPER (II) ION, GLYCEROL, ...
著者Okajima, T, Nakanishi, S, Murakawa, T, Kataoka, M, Hayashi, H, Hamaguchi, A, Nakai, T, Kawano, Y, Yamaguchi, H, Tanizawa, K.
登録日2015-03-10
公開日2015-08-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献Probing the Catalytic Mechanism of Copper Amine Oxidase from Arthrobacter globiformis with Halide Ions.
J.Biol.Chem., 290, 2015
3X3Z
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Copper amine oxidase from Arthrobacter globiformis: Aminoresorcinol form produced by anaerobic reduction with ethylamine hydrochloride
分子名称: CHLORIDE ION, COPPER (II) ION, GLYCEROL, ...
著者Okajima, T, Nakanishi, S, Murakawa, T, Kataoka, M, Hayashi, H, Hamaguchi, A, Nakai, T, Kawano, Y, Yamaguchi, H, Tanizawa, K.
登録日2015-03-10
公開日2015-08-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.51 Å)
主引用文献Probing the Catalytic Mechanism of Copper Amine Oxidase from Arthrobacter globiformis with Halide Ions.
J.Biol.Chem., 290, 2015
3X40
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Copper amine oxidase from Arthrobacter globiformis: Product Schiff-base form produced by anaerobic reduction in the presence of sodium chloride
分子名称: CHLORIDE ION, COPPER (II) ION, GLYCEROL, ...
著者Okajima, T, Nakanishi, S, Murakawa, T, Kataoka, M, Hayashi, H, Hamaguchi, A, Nakai, T, Kawano, Y, Yamaguchi, H, Tanizawa, K.
登録日2015-03-10
公開日2015-08-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Probing the Catalytic Mechanism of Copper Amine Oxidase from Arthrobacter globiformis with Halide Ions.
J.Biol.Chem., 290, 2015
1WMN
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BU of 1wmn by Molmil
Crystal structure of topaquinone-containing amine oxidase activated by cobalt ion
分子名称: COBALT (II) ION, Phenylethylamine oxidase
著者Okajima, T, Kishishita, S, Chiu, Y.C, Murakawa, T, Kim, M, Yamaguchi, H, Hirota, S, Kuroda, S, Tanizawa, K.
登録日2004-07-13
公開日2005-08-02
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Reinvestigation of metal ion specificity for quinone cofactor biogenesis in bacterial copper amine oxidase
Biochemistry, 44, 2005
1WMO
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BU of 1wmo by Molmil
Crystal structure of topaquinone-containing amine oxidase activated by nickel ion
分子名称: NICKEL (II) ION, Phenylethylamine oxidase
著者Okajima, T, Kishishita, S, Chiu, Y.C, Murakawa, T, Kim, M, Yamaguchi, H, Hirota, S, Kuroda, S, Tanizawa, K.
登録日2004-07-13
公開日2005-08-02
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Reinvestigation of metal ion specificity for quinone cofactor biogenesis in bacterial copper amine oxidase
Biochemistry, 44, 2005
1WMP
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BU of 1wmp by Molmil
Crystal structure of amine oxidase complexed with cobalt ion
分子名称: COBALT (II) ION, Phenylethylamine oxidase
著者Okajima, T, Kishishita, S, Chiu, Y.C, Murakawa, T, Kim, M, Yamaguchi, H, Hirota, S, Kuroda, S, Tanizawa, K.
登録日2004-07-13
公開日2005-08-02
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Reinvestigation of metal ion specificity for quinone cofactor biogenesis in bacterial copper amine oxidase
Biochemistry, 44, 2005
7ED9
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BU of 7ed9 by Molmil
Crystal structure of selenomethionine-labeled Thermus thermophilus FakA ATP-binding domain
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Probable kinase
著者Nakatani, M, Nakahara, S, Fukui, K, Murakawa, T, Masui, R.
登録日2021-03-15
公開日2022-03-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.01764154 Å)
主引用文献Crystal structure of a nucleotide-binding domain of fatty acid kinase FakA from Thermus thermophilus HB8.
J.Struct.Biol., 214, 2022
7ED6
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BU of 7ed6 by Molmil
Crystal structure of Thermus thermophilus FakA ATP-binding domain
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Probable kinase
著者Nakatani, M, Nakahara, S, Fukui, K, Murakawa, T, Masui, R.
登録日2021-03-15
公開日2022-03-16
最終更新日2023-01-11
実験手法X-RAY DIFFRACTION (1.92850327 Å)
主引用文献Crystal structure of a nucleotide-binding domain of fatty acid kinase FakA from Thermus thermophilus HB8.
J.Struct.Biol., 214, 2022
2CWV
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BU of 2cwv by Molmil
Product schiff-base intermediate of copper amine oxidase from arthrobacter globiformis
分子名称: COPPER (II) ION, Phenylethylamine oxidase
著者Chiu, Y.C, Okajima, T, Murakawa, T, Uchida, M, Taki, M, Hirota, S, Kim, M, Yamaguchi, H, Kawano, Y, Kamiya, N, Kuroda, S, Hayashi, H, Yamamoto, Y, Tanizawa, K.
登録日2005-06-26
公開日2006-05-02
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Kinetic and Structural Studies on the Catalytic Role of the Aspartic Acid Residue Conserved in Copper Amine Oxidase(,)
Biochemistry, 45, 2006
2CWU
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BU of 2cwu by Molmil
Substrate schiff-base intermediate of copper amine oxidase from arthrobacter globiformis
分子名称: COPPER (II) ION, Phenylethylamine oxidase
著者Chiu, Y.C, Okajima, T, Murakawa, T, Uchida, M, Taki, M, Hirota, S, Kim, M, Yamaguchi, H, Kawano, Y, Kamiya, N, Kuroda, S, Hayashi, H, Yamamoto, Y, Tanizawa, K.
登録日2005-06-26
公開日2006-05-02
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Kinetic and Structural Studies on the Catalytic Role of the Aspartic Acid Residue Conserved in Copper Amine Oxidase(,)
Biochemistry, 45, 2006
2CWT
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BU of 2cwt by Molmil
Catalytic base deletion in copper amine oxidase from arthrobacter globiformis
分子名称: COPPER (II) ION, Phenylethylamine oxidase
著者Chiu, Y.C, Okajima, T, Murakawa, T, Uchida, M, Taki, M, Hirota, S, Kim, M, Yamaguchi, H, Kawano, Y, Kamiya, N, Kuroda, S, Hayashi, H, Yamamoto, Y, Tanizawa, K.
登録日2005-06-26
公開日2006-05-02
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献Kinetic and Structural Studies on the Catalytic Role of the Aspartic Acid Residue Conserved in Copper Amine Oxidase(,)
Biochemistry, 45, 2006
3VX4
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BU of 3vx4 by Molmil
Crystal Structure of the Nucleotide-Binding Domain of S. mutans ComA, a Bifunctional ATP-binding Cassette Transporter Involved in the Quorum-sensing Pathway
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Putative ABC transporter, ...
著者Ishii, S, Yano, T, Okamoto, A, Murakawa, T, Hayashi, H.
登録日2012-09-11
公開日2013-04-17
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.69 Å)
主引用文献Boundary of the Nucleotide-Binding Domain of Streptococcus ComA Based on Functional and Structural Analysis
Biochemistry, 52, 2013
8H1F
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BU of 8h1f by Molmil
Aquifex aeolicus MutL endonuclease domain complexed with zinc ions after soaking
分子名称: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, DNA mismatch repair protein MutL, ...
著者Fukui, K, Yano, T.
登録日2022-10-03
公開日2023-08-16
実験手法X-RAY DIFFRACTION (1.22 Å)
主引用文献Catalytic mechanism of the zinc-dependent MutL endonuclease reaction.
Life Sci Alliance, 6, 2023
8H1E
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Aquifex aeolicus MutL endonuclease domain complexed with manganese ions
分子名称: DI(HYDROXYETHYL)ETHER, DNA mismatch repair protein MutL, MANGANESE (II) ION
著者Fukui, K, Yano, T.
登録日2022-10-03
公開日2023-08-16
実験手法X-RAY DIFFRACTION (1.22 Å)
主引用文献Catalytic mechanism of the zinc-dependent MutL endonuclease reaction.
Life Sci Alliance, 6, 2023
8H1G
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BU of 8h1g by Molmil
The R406T mutant form of the Aquifex aeolicus MutL endonuclease domain
分子名称: CADMIUM ION, DI(HYDROXYETHYL)ETHER, DNA mismatch repair protein MutL, ...
著者Fukui, K, Yano, T.
登録日2022-10-03
公開日2023-08-16
実験手法X-RAY DIFFRACTION (1.43 Å)
主引用文献Catalytic mechanism of the zinc-dependent MutL endonuclease reaction.
Life Sci Alliance, 6, 2023
6LZJ
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BU of 6lzj by Molmil
Aquifex aeolicus MutL ATPase domain complexed with AMPPCP
分子名称: DNA mismatch repair protein MutL, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
著者Fukui, K, Izuhara, K, Yano, T.
登録日2020-02-19
公開日2020-07-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.72835565 Å)
主引用文献A Lynch syndrome-associated mutation at a Bergerat ATP-binding fold destabilizes the structure of the DNA mismatch repair endonuclease MutL.
J.Biol.Chem., 295, 2020
6LZI
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Aquifex aeolicus MutL ATPase domain complexed with ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, DI(HYDROXYETHYL)ETHER, DNA mismatch repair protein MutL, ...
著者Fukui, K, Izuhara, K, Yano, T.
登録日2020-02-19
公開日2020-07-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.69105685 Å)
主引用文献A Lynch syndrome-associated mutation at a Bergerat ATP-binding fold destabilizes the structure of the DNA mismatch repair endonuclease MutL.
J.Biol.Chem., 295, 2020
6LZK
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Aquifex aeolicus MutL ATPase domain with K252N mutation
分子名称: DI(HYDROXYETHYL)ETHER, DNA mismatch repair protein MutL, SODIUM ION
著者Fukui, K, Izuhara, K, Yano, T.
登録日2020-02-19
公開日2020-07-01
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.15949631 Å)
主引用文献A Lynch syndrome-associated mutation at a Bergerat ATP-binding fold destabilizes the structure of the DNA mismatch repair endonuclease MutL.
J.Biol.Chem., 295, 2020
7VUF
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BU of 7vuf by Molmil
Crystal Structure of the core region of Thermus thermophilus MutS2.
分子名称: DI(HYDROXYETHYL)ETHER, Endonuclease MutS2, MAGNESIUM ION
著者Fukui, K, Yano, T.
登録日2021-11-02
公開日2022-04-06
最終更新日2022-10-19
実験手法X-RAY DIFFRACTION (3.11 Å)
主引用文献Structural and functional insights into the mechanism by which MutS2 recognizes a DNA junction.
Structure, 30, 2022

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