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1TJA
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BU of 1tja by Molmil
Fitting of gp8, gp9, and gp11 into the cryo-EM reconstruction of the bacteriophage T4 contracted tail
分子名称: Baseplate structural protein Gp11, Baseplate structural protein Gp8, Baseplate structural protein Gp9
著者Leiman, P.G, Chipman, P.R, Kostyuchenko, V.A, Mesyanzhinov, V.V, Rossmann, M.G.
登録日2004-06-03
公開日2004-08-31
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (16 Å)
主引用文献Three-dimensional rearrangement of proteins in the tail of bacteriophage t4 on infection of its host
Cell(Cambridge,Mass.), 118, 2004
1EL6
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BU of 1el6 by Molmil
STRUCTURE OF BACTERIOPHAGE T4 GENE PRODUCT 11, THE INTERFACE BETWEEN THE BASEPLATE AND SHORT TAIL FIBERS
分子名称: BASEPLATE STRUCTURAL PROTEIN GP11
著者Leiman, P.G, Kostyuchenko, V.A, Schneider, M.M, Kurochkina, L.P, Mesyanzhinov, V.V, Rossmann, M.G.
登録日2000-03-13
公開日2000-04-05
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of bacteriophage T4 gene product 11, the interface between the baseplate and short tail fibers.
J.Mol.Biol., 301, 2000
6ORJ
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BU of 6orj by Molmil
Central spike of phiKZ phage tail
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, PHIKZ164, ...
著者Leiman, P.G, Browning, C, Shneider, M.M.
登録日2019-04-30
公開日2019-06-19
実験手法X-RAY DIFFRACTION (2.37 Å)
主引用文献Central spike of phiKZ phage tail
To Be Published
2FKK
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BU of 2fkk by Molmil
Crystal structure of the C-terminal domain of the bacteriophage T4 gene product 10
分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BROMIDE ION, ...
著者Leiman, P.G, Shneider, M.M, Mesyanzhinov, V.V, Rossmann, M.G.
登録日2006-01-04
公開日2006-04-04
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Evolution of bacteriophage tails: structure of t4 gene product 10
J.Mol.Biol., 358, 2006
2FL9
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BU of 2fl9 by Molmil
Evolution of bacteriophage tails: Structure of T4 gene product 10
分子名称: Baseplate structural protein Gp10
著者Leiman, P.G, Shneider, M.M, Mesyanzhinov, V.V, Rossmann, M.G.
登録日2006-01-05
公開日2006-04-04
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (17 Å)
主引用文献Evolution of bacteriophage tails: structure of t4 gene product 10
J.Mol.Biol., 358, 2006
2FL8
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BU of 2fl8 by Molmil
Fitting of the gp10 trimer structure into the cryoEM map of the bacteriophage T4 baseplate in the hexagonal conformation.
分子名称: Baseplate structural protein Gp10
著者Leiman, P.G, Shneider, M.M, Mesyanzhinov, V.V, Rossmann, M.G.
登録日2006-01-05
公開日2006-04-04
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (12 Å)
主引用文献Evolution of bacteriophage tails: structure of t4 gene product 10
J.Mol.Biol., 358, 2006
1N80
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BU of 1n80 by Molmil
Bacteriophage T4 baseplate structural protein gp8
分子名称: CHLORIDE ION, baseplate structural protein gp8
著者Leiman, P.G, Shneider, M.M, Kostyuchenko, V.A, Chipman, P.R, Mesyanzhinov, V.V, Rossmann, M.G.
登録日2002-11-18
公開日2003-06-10
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Structure and location of gene product 8 in the bacteriophage T4 baseplate
J.Mol.Biol., 328, 2003
1N7Z
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BU of 1n7z by Molmil
Structure and location of gene product 8 in the bacteriophage T4 baseplate
分子名称: CHLORIDE ION, baseplate structural protein gp8
著者Leiman, P.G, Shneider, M.M, Kostyuchenko, V.A, Chipman, P.R, Mesyanzhinov, V.V, Rossmann, M.G.
登録日2002-11-18
公開日2003-06-10
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure and location of gene product 8 in the bacteriophage T4 baseplate
J.Mol.Biol., 328, 2003
1N8B
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BU of 1n8b by Molmil
Bacteriophage T4 baseplate structural protein gp8
分子名称: BROMIDE ION, baseplate structural protein gp8
著者Leiman, P.G, Shneider, M.M, Kostyuchenko, V.A, Chipman, P.R, Mesyanzhinov, V.V, Rossmann, M.G.
登録日2002-11-20
公開日2003-06-10
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structure and location of gene product 8 in the bacteriophage T4 baseplate
J.Mol.Biol., 328, 2003
7UM1
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BU of 7um1 by Molmil
Structure of bacteriophage AR9 non-virion RNAP polymerase holoenzyme determined by cryo-EM
分子名称: DNA-directed RNA polymerase, DNA-directed RNA polymerase beta subunit, DNA-directed RNA polymerase beta' subunit, ...
著者Leiman, P.G, Fraser, A, Sokolova, M.L.
登録日2022-04-05
公開日2022-07-06
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Structural basis of template strand deoxyuridine promoter recognition by a viral RNA polymerase.
Nat Commun, 13, 2022
7UM0
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BU of 7um0 by Molmil
Structure of the phage AR9 non-virion RNA polymerase holoenzyme in complex with two DNA oligonucleotides containing the AR9 P077 promoter as determined by cryo-EM
分子名称: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, 2'-DEOXYURIDINE-5'-MONOPHOSPHATE, DNA-directed RNA polymerase, ...
著者Leiman, P.G, Fraser, A, Sokolova, M.L.
登録日2022-04-05
公開日2022-07-06
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Structural basis of template strand deoxyuridine promoter recognition by a viral RNA polymerase.
Nat Commun, 13, 2022
7S00
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BU of 7s00 by Molmil
X-ray structure of the phage AR9 non-virion RNA polymerase core
分子名称: DNA-directed RNA polymerase, DNA-directed RNA polymerase beta subunit, DNA-directed RNA polymerase beta' subunit, ...
著者Leiman, P.G, Sokolova, M.L, Fraser, A.
登録日2021-08-28
公開日2022-07-06
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structural basis of template strand deoxyuridine promoter recognition by a viral RNA polymerase.
Nat Commun, 13, 2022
7S01
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BU of 7s01 by Molmil
X-ray structure of the phage AR9 non-virion RNA polymerase holoenzyme in complex with a forked oligonucleotide containing the P077 promoter
分子名称: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, ...
著者Leiman, P.G, Sokolova, M.L, Gordeeva, J, Fraser, A, Severinov, K.V.
登録日2021-08-28
公開日2022-07-06
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Structural basis of template strand deoxyuridine promoter recognition by a viral RNA polymerase.
Nat Commun, 13, 2022
5IW9
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BU of 5iw9 by Molmil
Structure of bacteriophage T4 gp25, sheath polymerization initiator
分子名称: Baseplate wedge protein gp25
著者Leiman, P.G, Browning, C, Shneider, M.M.
登録日2016-03-22
公開日2016-05-11
最終更新日2016-06-08
実験手法X-RAY DIFFRACTION (2.47 Å)
主引用文献Structure of the T4 baseplate and its function in triggering sheath contraction.
Nature, 533, 2016
6VR4
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BU of 6vr4 by Molmil
Virion-packaged DNA-dependent RNA polymerase of crAss-like phage phi14:2
分子名称: CHLORIDE ION, DNA-dependent RNA polymerase, SODIUM ION
著者Leiman, P.G, Sokolova, M.L.
登録日2020-02-06
公開日2020-07-29
最終更新日2021-01-20
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Structure and function of virion RNA polymerase of a crAss-like phage.
Nature, 589, 2020
6E0V
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BU of 6e0v by Molmil
Apo crystal structure of the colanidase tailspike protein gp150 of Phage Phi92
分子名称: 1,2-ETHANEDIOL, Bacteriophage Phi92 gp150, CHLORIDE ION, ...
著者Leiman, P.G, Browning, C, Gerardy-Schahn, R, Shneider, M.M, Plattner, M, Schwarzer, D.
登録日2018-07-07
公開日2019-07-17
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal structure of the colanidase tailspike protein gp150 of Phage Phi92 complexed with one repeating unit of colanic acid
To Be Published
5LYE
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BU of 5lye by Molmil
Re-refined structure of the bacteriophage T4 short tail fibre PDB entry 1H6W containing 71 additionally identified residues
分子名称: CHLORIDE ION, Gp12, SULFATE ION
著者van Raaij, M.J, Taylor, N.M.I, Leiman, P.G.
登録日2016-09-27
公開日2018-01-17
最終更新日2019-11-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Contractile injection systems of bacteriophages and related systems.
Mol. Microbiol., 108, 2018
7CN7
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BU of 7cn7 by Molmil
T4 phage spackle protein gp61.3 complex with lysozyme domain of gp5 tail lysozyme
分子名称: 1,2-ETHANEDIOL, 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, Baseplate central spike complex protein gp5, ...
著者Kanamaru, S, Leiman, P.G.
登録日2020-07-30
公開日2020-10-14
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Structure and Function of the T4 Spackle Protein Gp61.3.
Viruses, 12, 2020
7CN6
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BU of 7cn6 by Molmil
T4 phage spackle protein gp61.3
分子名称: CALCIUM ION, Protein spackle
著者Kanamaru, S, Leiman, P.G.
登録日2020-07-30
公開日2020-10-14
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure and Function of the T4 Spackle Protein Gp61.3.
Viruses, 12, 2020
6P20
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BU of 6p20 by Molmil
Bacteriophage phiKZ gp163.1 PAAR repeat protein in complex with a T4 gp5 beta-helix fragment modified to mimic the phiKZ central spike gp164
分子名称: 1,2-ETHANEDIOL, 9-OCTADECENOIC ACID, Baseplate central spike complex protein gp5,PHIKZ164, ...
著者Buth, S.A, Shneider, M.M, Leiman, P.G.
登録日2019-05-20
公開日2020-05-27
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.749 Å)
主引用文献Bacteriophage phiKZ gp163.1 PAAR repeat protein in complex with a T4 gp5 beta-helix fragment modified to mimic the phiKZ central spike gp164
To Be Published
6P1Z
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BU of 6p1z by Molmil
Bacteriophage phiKZ gp163.1 PAAR repeat protein in complex with the C-terminal part of the T4 gp5 beta-helical domain
分子名称: 9-OCTADECENOIC ACID, Baseplate central spike complex protein gp5, MAGNESIUM ION, ...
著者Buth, S.A, Shneider, M.M, Leiman, P.G.
登録日2019-05-20
公開日2020-05-27
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.099 Å)
主引用文献Bacteriophage phiKZ gp163.1 PAAR repeat protein in complex with the C-terminal part of the T4 gp5 beta-helical domain
To Be Published
6P22
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BU of 6p22 by Molmil
Photorhabdus Virulence Cassette (PVC) PAAR repeat protein Pvc10 in complex with a T4 gp5 beta-helix fragment modified to mimic Pvc8, the central spike protein of PVC
分子名称: 9-OCTADECENOIC ACID, CHIMERA OF CENTRAL SPIKE PROTEINS GP5 FROM PHAGE T4 AND PVC8 FROM PVC, MAGNESIUM ION, ...
著者Buth, S.A, Shneider, M.M, Leiman, P.G.
登録日2019-05-20
公開日2020-05-27
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.291 Å)
主引用文献Photorhabdus Virulence Cassette (PVC) PAAR repeat protein Pvc10 in complex with a T4 gp5 beta-helix fragment modified to mimic Pvc8, the central spike protein of PVC
To Be Published
6P2A
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BU of 6p2a by Molmil
Chimera of bacteriophage OBP gp146 central spike protein and a T4 gp5 beta-helix fragment
分子名称: 9-OCTADECENOIC ACID, CHIMERA OF BACTERIOPHAGE OBP GP146 AND A T4 GP5, FE (II) ION, ...
著者Buth, S.A, Shneider, M.M, Leiman, P.G.
登録日2019-05-21
公開日2020-05-27
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Chimera of bacteriophage OBP gp146 central spike protein and a T4 gp5 beta-helix fragment
To Be Published
5CES
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BU of 5ces by Molmil
C-terminal domain of the R-type pyocin baseplate protein PA0618
分子名称: PA0618
著者Plattner, M, Buth, S.A, Shneider, M.M, Leiman, P.G.
登録日2015-07-07
公開日2016-07-27
最終更新日2020-05-13
実験手法X-RAY DIFFRACTION (2.102 Å)
主引用文献Action of a minimal contractile bactericidal nanomachine.
Nature, 580, 2020
4Y9V
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BU of 4y9v by Molmil
Gp54 tailspike of Acinetobacter baumannii bacteriophage AP22 in complex with A. baumannii capsular saccharide
分子名称: 1,2-ETHANEDIOL, 2-acetamido-2,4-dideoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-alpha-D-fucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-mannopyranuronic acid, CHLORIDE ION, ...
著者Buth, S.A, Shneider, M.M, Leiman, P.G.
登録日2015-02-17
公開日2017-02-01
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (0.9 Å)
主引用文献Structure of Acinetobacter baumannii bacteriophage AP22 polysaccharide degrading lyase in complex with A. baumannii capsular saccharide at 0.9 A resolution
TO BE PUBLISHED

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件を2024-04-24に公開中

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