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7SER
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BU of 7ser by Molmil
PRMT5/MEP50 with compound 30 bound
分子名称: (2M)-2-{4-[4-(aminomethyl)-1-oxo-1,2-dihydrophthalazin-6-yl]-1-methyl-1H-pyrazol-5-yl}-1-benzothiophene-3-carbonitrile, 5'-DEOXY-5'-METHYLTHIOADENOSINE, Methylosome protein 50, ...
著者Gunn, R.J, Thomas, N.C, Lawson, J.D, Ivetac, A, Smith, C.R, Kulyk, S, Marx, M.A.
登録日2021-10-01
公開日2022-01-26
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.14 Å)
主引用文献Fragment-Based Discovery of MRTX1719, a Synthetic Lethal Inhibitor of the PRMT5•MTA Complex for the Treatment of MTAP -Deleted Cancers.
J.Med.Chem., 65, 2022
7S0U
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BU of 7s0u by Molmil
PRMT5/MEP50 crystal structure with MTA and phthalazinone fragment bound
分子名称: 1,2-ETHANEDIOL, 4-(aminomethyl)phthalazin-1(2H)-one, 5'-DEOXY-5'-METHYLTHIOADENOSINE, ...
著者Gunn, R.J, Thomas, N.C, Lawson, J.D, Ivetac, A, Smith, C.R, Kulyk, S, Marx, M.A.
登録日2021-08-31
公開日2022-01-26
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Fragment-Based Discovery of MRTX1719, a Synthetic Lethal Inhibitor of the PRMT5•MTA Complex for the Treatment of MTAP -Deleted Cancers.
J.Med.Chem., 65, 2022
7S1P
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BU of 7s1p by Molmil
PRMT5/MEP50 crystal structure with sinefungin bound
分子名称: Methylosome protein 50, Protein arginine N-methyltransferase 5, SINEFUNGIN
著者Gunn, R.J, Thomas, N.C, Lawson, J.D, Ivetac, A, Kulyk, S, Smith, C.R, Marx, M.A.
登録日2021-09-02
公開日2022-03-16
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Fragment-Based Discovery of MRTX1719, a Synthetic Lethal Inhibitor of the PRMT5•MTA Complex for the Treatment of MTAP -Deleted Cancers.
J.Med.Chem., 65, 2022
1ODK
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BU of 1odk by Molmil
PURINE NUCLEOSIDE PHOSPHORYLASE FROM THERMUS THERMOPHILUS
分子名称: GLYCEROL, PURINE NUCLEOSIDE PHOSPHORYLASE
著者Tahirov, T.H, Inagaki, E, Miyano, M.
登録日2003-02-19
公開日2003-02-27
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structure of Purine Nucleoside Phosphorylase from Thermus Thermophilus
J.Mol.Biol., 337, 2004
1ODJ
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BU of 1odj by Molmil
PURINE NUCLEOSIDE PHOSPHORYLASE FROM THERMUS THERMOPHILUS
分子名称: GUANOSINE, PURINE NUCLEOSIDE PHOSPHORYLASE, SULFATE ION
著者Tahirov, T.H, Inagaki, E, Miyano, M.
登録日2003-02-19
公開日2003-03-04
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal Structure of Purine Nucleoside Phosphorylase from Thermus Thermophilus
J.Mol.Biol., 337, 2004
1ODI
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BU of 1odi by Molmil
Purine nucleoside phosphorylase from Thermus Thermophilus
分子名称: ADENOSINE, PURINE NUCLEOSIDE PHOSPHORYLASE, SULFATE ION
著者Tahirov, T.H, Inagaki, E, Miyano, M.
登録日2003-02-19
公開日2003-02-27
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal Structure of Purine Nucleoside Phosphorylase from Thermus Thermophilus
J.Mol.Biol., 337, 2004
1ODL
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BU of 1odl by Molmil
PURINE NUCLEOSIDE PHOSPHORYLASE FROM THERMUS THERMOPHILUS
分子名称: CHLORIDE ION, GLYCEROL, PURINE NUCLEOSIDE PHOSPHORYLASE, ...
著者Tahirov, T.H, Inagaki, E, Miyano, M.
登録日2003-02-19
公開日2003-02-27
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal Structure of Purine Nucleoside Phosphorylase from Thermus Thermophilus
J.Mol.Biol., 337, 2004
7BVR
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BU of 7bvr by Molmil
DgpB-DgpC complex apo
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, AP_endonuc_2 domain-containing protein, DgpB, ...
著者Mori, T, He, H, Abe, I.
登録日2020-04-11
公開日2021-04-14
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献C-Glycoside metabolism in the gut and in nature: Identification, characterization, structural analyses and distribution of C-C bond-cleaving enzymes.
Nat Commun, 12, 2021
7BVS
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BU of 7bvs by Molmil
DfgA-DfgB complex apo
分子名称: DfgB, GLYCEROL, MANGANESE (II) ION, ...
著者Mori, T, He, H, Abe, I.
登録日2020-04-11
公開日2021-04-14
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献C-Glycoside metabolism in the gut and in nature: Identification, characterization, structural analyses and distribution of C-C bond-cleaving enzymes.
Nat Commun, 12, 2021
5B4C
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BU of 5b4c by Molmil
Crystal structure of H10N mutant of LpxH with manganese
分子名称: GLYCEROL, MANGANESE (II) ION, UDP-2,3-diacylglucosamine hydrolase
著者Okada, C, Wakabayashi, H, Yao, M, Tanaka, I.
登録日2016-04-03
公開日2016-09-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Crystal structures of the UDP-diacylglucosamine pyrophosphohydrase LpxH from Pseudomonas aeruginosa
Sci Rep, 6, 2016
5B4A
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BU of 5b4a by Molmil
Crystal structure of LpxH with lipid X in spacegroup P21
分子名称: (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE, GLYCEROL, UDP-2,3-diacylglucosamine hydrolase
著者Okada, C, Wakabayashi, H, Yao, M, Tanaka, I.
登録日2016-04-03
公開日2016-09-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献Crystal structures of the UDP-diacylglucosamine pyrophosphohydrase LpxH from Pseudomonas aeruginosa
Sci Rep, 6, 2016
5B4B
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BU of 5b4b by Molmil
Crystal structure of LpxH with lipid X in spacegroup C2
分子名称: (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE, GLYCEROL, UDP-2,3-diacylglucosamine hydrolase
著者Okada, C, Wakabayashi, H, Yao, M, Tanaka, I.
登録日2016-04-03
公開日2016-09-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structures of the UDP-diacylglucosamine pyrophosphohydrase LpxH from Pseudomonas aeruginosa
Sci Rep, 6, 2016
5B49
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Crystal structure of LpxH with manganese from Pseudomonas aeruginosa
分子名称: (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE, GLYCEROL, MANGANESE (II) ION, ...
著者Okada, C, Wakabayashi, H, Yao, M, Tanaka, I.
登録日2016-04-03
公開日2016-09-28
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structures of the UDP-diacylglucosamine pyrophosphohydrase LpxH from Pseudomonas aeruginosa
Sci Rep, 6, 2016
5B4D
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BU of 5b4d by Molmil
Crystal structure of H10N mutant of LpxH
分子名称: GLYCEROL, UDP-2,3-diacylglucosamine hydrolase
著者Okada, C, Wakabayashi, H, Yao, M, Tanaka, I.
登録日2016-04-03
公開日2016-09-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal structures of the UDP-diacylglucosamine pyrophosphohydrase LpxH from Pseudomonas aeruginosa
Sci Rep, 6, 2016
5HWA
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BU of 5hwa by Molmil
Crystal Structure of MH-K1 chitosanase in substrate-bound form
分子名称: 2-amino-2-deoxy-beta-D-glucopyranose-(1-4)-2-amino-2-deoxy-beta-D-glucopyranose-(1-4)-2-amino-2-deoxy-beta-D-glucopyranose-(1-4)-2-amino-2-deoxy-beta-D-glucopyranose, ACETIC ACID, CACODYLATE ION, ...
著者Suzuki, M, Saito, A, Ando, A, Miki, K, Saito, J.
登録日2016-01-29
公開日2017-02-08
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Crystal structure of the GH-46 subclass III chitosanase from Bacillus circulans MH-K1 in complex with chitotetraose
Biomed.Biochim.Acta, 1868, 2024
7EXZ
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BU of 7exz by Molmil
DgpB-DgpC complex apo 2.5 angstrom
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, AP_endonuc_2 domain-containing protein, DgpB, ...
著者Mori, T, Senda, M, Senda, T, Abe, I.
登録日2021-05-29
公開日2021-11-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献C-Glycoside metabolism in the gut and in nature: Identification, characterization, structural analyses and distribution of C-C bond-cleaving enzymes.
Nat Commun, 12, 2021
7EXB
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BU of 7exb by Molmil
DfgA-DfgB complex apo 2.4 angstrom
分子名称: DfgB, MANGANESE (II) ION, SULFATE ION, ...
著者Mori, T, Senda, M, Senda, T, Abe, I.
登録日2021-05-26
公開日2021-11-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献C-Glycoside metabolism in the gut and in nature: Identification, characterization, structural analyses and distribution of C-C bond-cleaving enzymes.
Nat Commun, 12, 2021
7DRD
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BU of 7drd by Molmil
Cryo-EM structure of DgpB-C at 2.85 angstrom resolution
分子名称: AP_endonuc_2 domain-containing protein, DgpB
著者Mori, T, Moriya, T, Adachi, N, Senda, T, Abe, I.
登録日2020-12-28
公開日2021-12-08
実験手法ELECTRON MICROSCOPY (2.85 Å)
主引用文献C-Glycoside metabolism in the gut and in nature: Identification, characterization, structural analyses and distribution of C-C bond-cleaving enzymes.
Nat Commun, 12, 2021
7DRE
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BU of 7dre by Molmil
Cryo-EM structure of DfgA-B at 2.54 angstrom resolution
分子名称: DfgB, Sugar phosphate isomerase/epimerase
著者Mori, T, Moriya, T, Adachi, N, Senda, T, Abe, I.
登録日2020-12-28
公開日2021-12-08
実験手法ELECTRON MICROSCOPY (2.54 Å)
主引用文献C-Glycoside metabolism in the gut and in nature: Identification, characterization, structural analyses and distribution of C-C bond-cleaving enzymes.
Nat Commun, 12, 2021
7VWS
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BU of 7vws by Molmil
Carbazole Prenyl Transferase LvqB4
分子名称: 2-methyl-1-[(2R)-2-oxidanylpropyl]-9H-carbazole-3,4-dione, LvqB4, MAGNESIUM ION, ...
著者Suemune, H, Nagata, R, Kuzuyama, T, Nagano, S.
登録日2021-11-11
公開日2022-03-23
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.71 Å)
主引用文献Structural Basis for the Prenylation Reaction of Carbazole-Containing Natural Products Catalyzed by Squalene Synthase-Like Enzymes.
Angew.Chem.Int.Ed.Engl., 61, 2022
7VWT
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BU of 7vwt by Molmil
Carbazole Prenyl Transferase CqsB4
分子名称: 2-methyl-1-[(2R)-2-oxidanylpropyl]-9H-carbazole-3,4-dione, CqsB4, DI(HYDROXYETHYL)ETHER, ...
著者Suemune, H, Nagata, R, Kuzuyama, T, Nagano, S.
登録日2021-11-11
公開日2022-03-23
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Structural Basis for the Prenylation Reaction of Carbazole-Containing Natural Products Catalyzed by Squalene Synthase-Like Enzymes.
Angew.Chem.Int.Ed.Engl., 61, 2022
6KSV
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BU of 6ksv by Molmil
Crystal structure of SurE with D-Leu
分子名称: Alpha/beta hydrolase, D-LEUCINE, S-(2-acetamidoethyl) (2R)-2-azanyl-4-methyl-pentanethioate, ...
著者Zhai, R, Mori, T, Abe, I.
登録日2019-08-26
公開日2020-06-24
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.42 Å)
主引用文献Heterochiral coupling in non-ribosomal peptide macrolactamization
Nat Catal, 2020
6KSU
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BU of 6ksu by Molmil
Crystal structure of SurE
分子名称: Alpha/beta hydrolase, MALONATE ION, SULFATE ION, ...
著者Zhai, R, Mori, T, Abe, I.
登録日2019-08-26
公開日2020-06-24
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Heterochiral coupling in non-ribosomal peptide macrolactamization
Nat Catal, 2020
3WNP
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BU of 3wnp by Molmil
D308A, F268V, D469Y, A513V, and Y515S quintuple mutant of Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase complexed with isomaltoundecaose
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, Cycloisomaltooligosaccharide glucanotransferase, ...
著者Suzuki, R, Suzuki, N, Fujimoto, Z, Momma, M, Kimura, K, Kitamura, S, Kimura, A, Funane, K.
登録日2013-12-10
公開日2014-02-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Molecular engineering of cycloisomaltooligosaccharide glucanotransferase from Bacillus circulans T-3040: structural determinants for the reaction product size and reactivity.
Biochem.J., 467, 2015
5X7G
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BU of 5x7g by Molmil
Crystal Structure of Paenibacillus sp. 598K cycloisomaltooligosaccharide glucanotransferase
分子名称: CALCIUM ION, Cycloisomaltooligosaccharide glucanotransferase, GLYCEROL, ...
著者Fujimoto, Z, Kishine, N, Suzuki, N, Suzuki, R, Momma, M, Funane, K.
登録日2017-02-26
公開日2017-04-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Isomaltooligosaccharide-binding structure ofPaenibacillussp. 598K cycloisomaltooligosaccharide glucanotransferase
Biosci. Rep., 37, 2017

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