6AIT
 
 | | Crystal structure of E. coli BepA | | 分子名称: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Beta-barrel assembly-enhancing protease, ZINC ION | | 著者 | Umar, M.S.M, Tanaka, Y, Kamikubo, H, Tsukazaki, T. | | 登録日 | 2018-08-24 | | 公開日 | 2018-12-26 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (2.598 Å) | | 主引用文献 | Structural Basis for the Function of the beta-Barrel Assembly-Enhancing Protease BepA.
J. Mol. Biol., 431, 2019
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5H18
 | | Crystal structure of catalytic domain of UGGT (UDP-glucose-bound form) from Thermomyces dupontii | | 分子名称: | CALCIUM ION, GLYCEROL, UGGT, ... | | 著者 | Satoh, T, Zhu, T, Toshimori, T, Kamikubo, H, Uchihashi, T, Kato, K. | | 登録日 | 2016-10-08 | | 公開日 | 2017-09-27 | | 最終更新日 | 2017-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | | 主引用文献 | Visualisation of a flexible modular structure of the ER folding-sensor enzyme UGGT.
Sci Rep, 7, 2017
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3VHX
 | | The crystal structure of Arf6-MKLP1 (Mitotic kinesin-like protein 1) complex | | 分子名称: | ADP-ribosylation factor 6, GLYCEROL, GUANOSINE-5'-TRIPHOSPHATE, ... | | 著者 | Makyio, H, Takei, T, Ohgi, H, Takahashi, S, Takatsu, H, Ueda, T, Kanaho, Y, Xie, Y, Shin, H.W, Kamikubo, H, Kataoka, M, Kawasaki, M, Kato, R, Wakatsuki, S, Nakayama, K. | | 登録日 | 2011-09-12 | | 公開日 | 2012-05-16 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (2.81 Å) | | 主引用文献 | Structural basis for Arf6-MKLP1 complex formation on the Flemming body responsible for cytokinesis
Embo J., 31, 2012
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3X39
 | | Domain-swapped dimer of Pseudomonas aeruginosa cytochrome c551 | | 分子名称: | Cytochrome c-551, HEME C | | 著者 | Nagao, S, Ueda, M, Osuka, H, Komori, H, Kamikubo, H, Kataoka, M, Higuchi, Y, Hirota, S. | | 登録日 | 2015-01-16 | | 公開日 | 2015-04-22 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | | 主引用文献 | Domain-Swapped Dimer of Pseudomonas aeruginosa Cytochrome c551: Structural Insights into Domain Swapping of Cytochrome c Family Proteins
Plos One, 10, 2015
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2IF0
 | | Crystal Structure of mouse Rab27b bound to GDP in monoclinic space group | | 分子名称: | GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Ras-related protein Rab-27B | | 著者 | Chavas, L.M.G, Torii, S, Kamikubo, H, Kawasaki, M, Ihara, K, Kato, R, Kataoka, M, Izumi, T, Wakatsuki, S. | | 登録日 | 2006-09-19 | | 公開日 | 2007-05-01 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | | 主引用文献 | Structure of the small GTPase Rab27b shows an unexpected swapped dimer
Acta Crystallogr.,Sect.D, 63, 2007
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3WC8
 | | Dimeric horse cytochrome c obtained by refolding with desalting method | | 分子名称: | Cytochrome c, DI(HYDROXYETHYL)ETHER, HEME C, ... | | 著者 | Parui, P.P, Deshpande, M.S, Nagao, S, Kamikubo, H, Komori, H, Higuchi, Y, Kataoka, M, Hirota, S. | | 登録日 | 2013-05-25 | | 公開日 | 2013-12-11 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | Formation of Oligomeric Cytochrome c during Folding by Intermolecular Hydrophobic Interaction between N- and C-Terminal alpha-Helices
Biochemistry, 52, 2013
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3WUI
 | | Dimeric horse cytochrome c formed by refolding from molten globule state | | 分子名称: | Cytochrome c, DI(HYDROXYETHYL)ETHER, HEME C, ... | | 著者 | Deshpande, M.S, Parui, P.P, Kamikubo, H, Yamanaka, M, Nagao, S, Komori, H, Kataoka, M, Higuchi, Y, Hirota, S. | | 登録日 | 2014-04-25 | | 公開日 | 2014-07-16 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | Formation of domain-swapped oligomer of cytochrome C from its molten globule state oligomer.
Biochemistry, 53, 2014
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2IEZ
 | | Crystal Structure of mouse Rab27b bound to GDP in monoclinic space group | | 分子名称: | CALCIUM ION, GUANOSINE-5'-DIPHOSPHATE, Ras-related protein Rab-27B | | 著者 | Chavas, L.M.G, Torii, S, Kamikubo, H, Kawasaki, M, Ihara, K, Kato, R, Kataoka, M, Izumi, T, Wakatsuki, S. | | 登録日 | 2006-09-19 | | 公開日 | 2007-05-01 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | | 主引用文献 | Structure of the small GTPase Rab27b shows an unexpected swapped dimer
Acta Crystallogr.,Sect.D, 63, 2007
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2IEY
 | | Crystal Structure of mouse Rab27b bound to GDP in hexagonal space group | | 分子名称: | GUANOSINE-5'-DIPHOSPHATE, Ras-related protein Rab-27B | | 著者 | Chavas, L.M.G, Torii, S, Kamikubo, H, Kawasaki, M, Ihara, K, Kato, R, Kataoka, M, Izumi, T, Wakatsuki, S. | | 登録日 | 2006-09-19 | | 公開日 | 2007-05-01 | | 最終更新日 | 2012-04-11 | | 実験手法 | X-RAY DIFFRACTION (3.18 Å) | | 主引用文献 | Structure of the small GTPase Rab27b shows an unexpected swapped dimer
Acta Crystallogr.,Sect.D, 63, 2007
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4B9O
 | | The PR0 Photocycle Intermediate of Photoactive Yellow Protein | | 分子名称: | 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN | | 著者 | Schotte, F, Cho, H.S, Kaila, V.R.I, Kamikubo, H, Dashdorj, N, Henry, E.R, Graber, T.J, Henning, R, Wulff, M, Hummer, G, Kataoka, M, Anfinrud, P.A. | | 登録日 | 2012-09-06 | | 公開日 | 2012-11-14 | | 最終更新日 | 2019-02-06 | | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | | 主引用文献 | Watching a Signaling Protein Function in Real Time Via 100-Ps Time-Resolved Laue Crystallography
Proc.Natl.Acad.Sci.USA, 109, 2012
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4BBV
 | | The PB0 Photocycle Intermediate of Photoactive Yellow Protein | | 分子名称: | 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN | | 著者 | Schotte, F, Cho, H.S, Kaila, V.R.I, Kamikubo, H, Dashdorj, N, Henry, E.R, Graber, T.J, Henning, R, Wulff, M, Hummer, G, Kataoka, M, Anfinrud, P.A. | | 登録日 | 2012-09-28 | | 公開日 | 2012-11-14 | | 最終更新日 | 2019-01-30 | | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | | 主引用文献 | Watching a Signaling Protein Function in Real Time Via 100-Ps Time-Resolved Laue Crystallography.
Proc.Natl.Acad.Sci.USA, 109, 2012
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4BBT
 | | The PR1 Photocycle Intermediate of Photoactive Yellow Protein | | 分子名称: | 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN | | 著者 | Schotte, F, Cho, H.S, Kaila, V.R.I, Kamikubo, H, Dashdorj, N, Henry, E.R, Graber, T.J, Henning, R, Wulff, M, Hummer, G, Kataoka, M, Anfinrud, P.A. | | 登録日 | 2012-09-27 | | 公開日 | 2012-11-14 | | 最終更新日 | 2019-01-30 | | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | | 主引用文献 | Watching a Signaling Protein Function in Real Time Via 100-Ps Time-Resolved Laue Crystallography.
Proc.Natl.Acad.Sci.USA, 109, 2012
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4BBU
 | | The PR2 Photocycle Intermediate of Photoactive Yellow Protein | | 分子名称: | 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN | | 著者 | Schotte, F, Cho, H.S, Kaila, V.R.I, Kamikubo, H, Dashdorj, N, Henry, E.R, Graber, T.J, Henning, R, Wulff, M, Hummer, G, Kataoka, M, Anfinrud, P.A. | | 登録日 | 2012-09-27 | | 公開日 | 2012-11-14 | | 最終更新日 | 2019-05-08 | | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | | 主引用文献 | Watching a Signaling Protein Function in Real Time Via 100-Ps Time-Resolved Laue Crystallography.
Proc.Natl.Acad.Sci.USA, 109, 2012
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2D02
 | | R52Q Mutant of Photoactive Yellow Protein, P65 Form | | 分子名称: | 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein | | 著者 | Shimizu, N, Kamikubo, H, Yamazaki, Y, Imamoto, Y, Kataoka, M. | | 登録日 | 2005-07-21 | | 公開日 | 2006-04-04 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (1.42 Å) | | 主引用文献 | The Crystal Structure of the R52Q Mutant Demonstrates a Role for R52 in Chromophore pK(a) Regulation in Photoactive Yellow Protein
Biochemistry, 45, 2006
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2D01
 | | Wild Type Photoactive Yellow Protein, P65 Form | | 分子名称: | 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein | | 著者 | Shimizu, N, Kamikubo, H, Yamazaki, Y, Imamoto, Y, Kataoka, M. | | 登録日 | 2005-07-21 | | 公開日 | 2006-04-04 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (1.34 Å) | | 主引用文献 | The Crystal Structure of the R52Q Mutant Demonstrates a Role for R52 in Chromophore pK(a) Regulation in Photoactive Yellow Protein
Biochemistry, 45, 2006
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5Y7F
 | | Crystal structure of catalytic domain of UGGT (UDP-bound form) from Thermomyces dupontii | | 分子名称: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, UGGT, ... | | 著者 | Satoh, T, Song, C, Zhu, T, Toshimori, T, Murata, K, Hayashi, Y, Kamikubo, H, Uchihashi, T, Kato, K. | | 登録日 | 2017-08-17 | | 公開日 | 2017-09-27 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (1.35 Å) | | 主引用文献 | Visualisation of a flexible modular structure of the ER folding-sensor enzyme UGGT.
Sci Rep, 7, 2017
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5Y7O
 | | Crystal structure of folding sensor region of UGGT from Thermomyces dupontii | | 分子名称: | UGGT | | 著者 | Satoh, T, Song, C, Zhu, T, Toshimori, T, Murata, K, Hayashi, Y, Kamikubo, H, Uchihashi, T, Kato, K. | | 登録日 | 2017-08-17 | | 公開日 | 2017-09-27 | | 最終更新日 | 2017-11-01 | | 実験手法 | X-RAY DIFFRACTION (3.1 Å) | | 主引用文献 | Visualisation of a flexible modular structure of the ER folding-sensor enzyme UGGT.
Sci Rep, 7, 2017
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2ZAM
 | | Crystal structure of mouse SKD1/VPS4B apo-form | | 分子名称: | Vacuolar protein sorting-associating protein 4B | | 著者 | Inoue, M, Kawasaki, M, Kamikubo, H, Kataoka, M, Kato, R, Yoshimori, T, Wakatsuki, S. | | 登録日 | 2007-10-08 | | 公開日 | 2008-10-07 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (3.5 Å) | | 主引用文献 | Nucleotide-dependent conformational changes and assembly of the AAA ATPase SKD1/VPS4B
Traffic, 9, 2008
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2ZAN
 | | Crystal structure of mouse SKD1/VPS4B ATP-form | | 分子名称: | ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Vacuolar protein sorting-associating protein 4B | | 著者 | Inoue, M, Kawasaki, M, Kamikubo, H, Kataoka, M, Kato, R, Yoshimori, T, Wakatsuki, S. | | 登録日 | 2007-10-08 | | 公開日 | 2008-10-07 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (3 Å) | | 主引用文献 | Nucleotide-dependent conformational changes and assembly of the AAA ATPase SKD1/VPS4B
Traffic, 9, 2008
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2ZAO
 | | Crystal structure of mouse SKD1/VPS4B ADP-form | | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, Vacuolar protein sorting-associating protein 4B | | 著者 | Inoue, M, Kawasaki, M, Kamikubo, H, Kataoka, M, Kato, R, Yoshimori, T, Wakatsuki, S. | | 登録日 | 2007-10-08 | | 公開日 | 2008-10-07 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (3.2 Å) | | 主引用文献 | Nucleotide-dependent conformational changes and assembly of the AAA ATPase SKD1/VPS4B
Traffic, 9, 2008
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3NBS
 | | Crystal structure of dimeric cytochrome c from horse heart | | 分子名称: | Cytochrome c, DI(HYDROXYETHYL)ETHER, HEME C, ... | | 著者 | Taketa, M, Komori, H, Hirota, S, Higuchi, Y. | | 登録日 | 2010-06-04 | | 公開日 | 2010-07-14 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | | 主引用文献 | Cytochrome c polymerization by successive domain swapping at the C-terminal helix
Proc.Natl.Acad.Sci.USA, 107, 2010
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3NBT
 | | Crystal structure of trimeric cytochrome c from horse heart | | 分子名称: | Cytochrome c, DI(HYDROXYETHYL)ETHER, HEME C, ... | | 著者 | Taketa, M, Komori, H, Hirota, S, Higuchi, Y. | | 登録日 | 2010-06-04 | | 公開日 | 2010-07-14 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | | 主引用文献 | Cytochrome c polymerization by successive domain swapping at the C-terminal helix
Proc.Natl.Acad.Sci.USA, 107, 2010
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5AUR
 | | Hydrogenobacter thermophilus cytochrome c552 dimer formed by domain swapping at N-terminal region | | 分子名称: | Cytochrome c-552, HEME C, IODIDE ION | | 著者 | Ren, C, Nagao, S, Yamanaka, M, Kamikubo, H, Komori, H, Shomura, Y, Higuchi, Y, Hirota, S. | | 登録日 | 2015-06-08 | | 公開日 | 2015-10-21 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.26 Å) | | 主引用文献 | Oligomerization enhancement and two domain swapping mode detection for thermostable cytochrome c552via the elongation of the major hinge loop.
Mol Biosyst, 11, 2015
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5GX9
 | | PYP mutant - E46Q | | 分子名称: | 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein | | 著者 | Yonezawa, K. | | 登録日 | 2016-09-16 | | 公開日 | 2017-08-30 | | 最終更新日 | 2023-11-08 | | 実験手法 | NEUTRON DIFFRACTION (1.493 Å) | | 主引用文献 | Neutron crystallography of photoactive yellow protein reveals unusual protonation state of Arg52 in the crystal
Sci Rep, 7, 2017
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5XQY
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