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7B7Q
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BU of 7b7q by Molmil
CooS-V with oxidized hybrid cluster
分子名称: 3,5-dioxa-7-thia-1-thionia-2$l^{2},4$l^{2},6$l^{3},8$l^{2}-tetraferrabicyclo[4.2.0]octane, Carbon monoxide dehydrogenase, DI(HYDROXYETHYL)ETHER, ...
著者Jeoung, J.H, Dobbek, H.
登録日2020-12-11
公開日2022-01-12
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献A Morphing [4Fe-3S-nO]-Cluster within a Carbon Monoxide Dehydrogenase Scaffold.
Angew.Chem.Int.Ed.Engl., 61, 2022
7B7T
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BU of 7b7t by Molmil
CooS-V with oxidized hybrid cluster
分子名称: (R,R)-2,3-BUTANEDIOL, Carbon monoxide dehydrogenase, DI(HYDROXYETHYL)ETHER, ...
著者Jeoung, J.H, Dobbek, H.
登録日2020-12-11
公開日2022-01-12
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.38 Å)
主引用文献A Morphing [4Fe-3S-nO]-Cluster within a Carbon Monoxide Dehydrogenase Scaffold.
Angew.Chem.Int.Ed.Engl., 61, 2022
1FFU
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BU of 1ffu by Molmil
CARBON MONOXIDE DEHYDROGENASE FROM HYDROGENOPHAGA PSEUDOFLAVA WHICH LACKS THE MO-PYRANOPTERIN MOIETY OF THE MOLYBDENUM COFACTOR
分子名称: CUTL, MOLYBDOPROTEIN OF CARBON MONOXIDE DEHYDROGENASE, CUTM, ...
著者Haenzelmann, P, Dobbek, H, Gremer, L, Huber, R, Meyer, O.
登録日2000-07-26
公開日2000-09-15
最終更新日2022-12-21
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献The effect of intracellular molybdenum in Hydrogenophaga pseudoflava on the crystallographic structure of the seleno-molybdo-iron-sulfur flavoenzyme carbon monoxide dehydrogenase.
J.Mol.Biol., 301, 2000
1FFV
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BU of 1ffv by Molmil
CARBON MONOXIDE DEHYDROGENASE FROM HYDROGENOPHAGA PSEUDOFLAVA
分子名称: (MOLYBDOPTERIN-CYTOSINE DINUCLEOTIDE-S,S)-DIOXO-AQUA-MOLYBDENUM(V), CUTL, MOLYBDOPROTEIN OF CARBON MONOXIDE DEHYDROGENASE, ...
著者Haenzelmann, P, Dobbek, H, Gremer, L, Huber, R, Meyer, O.
登録日2000-07-26
公開日2000-09-15
最終更新日2022-12-21
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献The effect of intracellular molybdenum in Hydrogenophaga pseudoflava on the crystallographic structure of the seleno-molybdo-iron-sulfur flavoenzyme carbon monoxide dehydrogenase.
J.Mol.Biol., 301, 2000
2X9B
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BU of 2x9b by Molmil
The filamentous phages fd and IF1 use different infection mechanisms
分子名称: ATTACHMENT PROTEIN G3P
著者Lorenz, S.H, Jakob, R.P, Weininger, U, Dobbek, H, Schmid, F.X.
登録日2010-03-15
公開日2010-12-01
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.92 Å)
主引用文献The Filamentous Phages Fd and If1 Use Different Mechanisms to Infect Escherichia Coli.
J.Mol.Biol., 405, 2011
2X9A
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BU of 2x9a by Molmil
crystal structure of g3p from phage IF1 in complex with its coreceptor, the C-terminal domain of TolA
分子名称: ATTACHMENT PROTEIN G3P, MEMBRANE SPANNING PROTEIN, REQUIRED FOR OUTER MEMBRANE INTEGRITY
著者Lorenz, S.H, Jakob, R.P, Dobbek, H, Schmid, F.X.
登録日2010-03-15
公開日2010-12-01
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.47 Å)
主引用文献The Filamentous Phages Fd and If1 Use Different Mechanisms to Infect Escherichia Coli.
J.Mol.Biol., 405, 2011
6QII
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BU of 6qii by Molmil
Xenon derivatization of the F420-reducing [NiFe] hydrogenase complex from Methanosarcina barkeri
分子名称: (R,R)-2,3-BUTANEDIOL, Coenzyme F420 hydrogenase subunit alpha, Coenzyme F420 hydrogenase subunit beta, ...
著者Ilina, Y, Lorent, C, Katz, S, Jeoung, J.H, Shima, S, Horch, M, Zebger, I, Dobbek, H.
登録日2019-01-19
公開日2019-10-23
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.28 Å)
主引用文献X-ray Crystallography and Vibrational Spectroscopy Reveal the Key Determinants of Biocatalytic Dihydrogen Cycling by [NiFe] Hydrogenases.
Angew.Chem.Int.Ed.Engl., 58, 2019
6QGT
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BU of 6qgt by Molmil
The carbon monoxide inhibition of F420-reducing [NiFe] hydrogenase complex from Methanosarcina barkeri
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, (R,R)-2,3-BUTANEDIOL, Coenzyme F420 hydrogenase subunit beta, ...
著者Ilina, Y, Lorent, C, Katz, S, Jeoung, J.H, Shima, S, Horch, M, Zebger, I, Dobbek, H.
登録日2019-01-12
公開日2019-10-23
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.988 Å)
主引用文献X-ray Crystallography and Vibrational Spectroscopy Reveal the Key Determinants of Biocatalytic Dihydrogen Cycling by [NiFe] Hydrogenases.
Angew.Chem.Int.Ed.Engl., 58, 2019
6QGR
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BU of 6qgr by Molmil
The F420-reducing [NiFe] hydrogenase complex from Methanosarcina barkeri at the Nia-S state
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, (R,R)-2,3-BUTANEDIOL, Coenzyme F420 hydrogenase subunit alpha, ...
著者Ilina, Y, Lorent, C, Katz, S, Jeoung, J.H, Shima, S, Horch, M, Zebger, I, Dobbek, H.
登録日2019-01-12
公開日2019-10-23
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.839 Å)
主引用文献X-ray Crystallography and Vibrational Spectroscopy Reveal the Key Determinants of Biocatalytic Dihydrogen Cycling by [NiFe] Hydrogenases.
Angew.Chem.Int.Ed.Engl., 58, 2019
8OMY
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BU of 8omy by Molmil
NI,FE-CODH -600mV state : 35 min Dioxygen Exposure
分子名称: Carbon monoxide dehydrogenase 2, FE (II) ION, FE (III) ION, ...
著者Basak, Y, Jeoung, J.-H, Dobbek, H.
登録日2023-03-31
公開日2023-12-06
実験手法X-RAY DIFFRACTION (1.37 Å)
主引用文献Stepwise O 2 -Induced Rearrangement and Disassembly of the [NiFe 4 (OH)( mu 3 -S) 4 ] Active Site Cluster of CO Dehydrogenase.
Angew.Chem.Int.Ed.Engl., 62, 2023
8ON3
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BU of 8on3 by Molmil
NI,FE-CODH -320mV + CN state : 24 h Dioxygen Exposure
分子名称: Carbon monoxide dehydrogenase 2, DI(HYDROXYETHYL)ETHER, FE (II) ION, ...
著者Basak, Y, Jeoung, J.-H, Dobbek, H.
登録日2023-03-31
公開日2023-12-06
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献Stepwise O 2 -Induced Rearrangement and Disassembly of the [NiFe 4 (OH)( mu 3 -S) 4 ] Active Site Cluster of CO Dehydrogenase.
Angew.Chem.Int.Ed.Engl., 62, 2023
8ON1
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NI,FE-CODH -600mV state : 4 h Dioxygen Exposure
分子名称: Carbon monoxide dehydrogenase 2, FE (II) ION, FE (III) ION, ...
著者Basak, Y, Jeoung, J.-H, Dobbek, H.
登録日2023-03-31
公開日2023-12-06
実験手法X-RAY DIFFRACTION (1.37 Å)
主引用文献Stepwise O 2 -Induced Rearrangement and Disassembly of the [NiFe 4 (OH)( mu 3 -S) 4 ] Active Site Cluster of CO Dehydrogenase.
Angew.Chem.Int.Ed.Engl., 62, 2023
8ON0
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BU of 8on0 by Molmil
NI,FE-CODH -600mV state : 90 min Dioxygen Exposure
分子名称: Carbon monoxide dehydrogenase 2, FE (II) ION, FE (III) ION, ...
著者Basak, Y, Jeoung, J.-H, Dobbek, H.
登録日2023-03-31
公開日2023-12-06
実験手法X-RAY DIFFRACTION (1.29 Å)
主引用文献Stepwise O 2 -Induced Rearrangement and Disassembly of the [NiFe 4 (OH)( mu 3 -S) 4 ] Active Site Cluster of CO Dehydrogenase.
Angew.Chem.Int.Ed.Engl., 62, 2023
8ON2
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BU of 8on2 by Molmil
NI,FE-CODH -600mV state : 24 h Dioxygen Exposure
分子名称: Carbon monoxide dehydrogenase 2, FE (III) ION, FE2/S2 (INORGANIC) CLUSTER, ...
著者Basak, Y, Jeoung, J.-H, Dobbek, H.
登録日2023-03-31
公開日2023-12-06
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Stepwise O 2 -Induced Rearrangement and Disassembly of the [NiFe 4 (OH)( mu 3 -S) 4 ] Active Site Cluster of CO Dehydrogenase.
Angew.Chem.Int.Ed.Engl., 62, 2023
8OMX
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BU of 8omx by Molmil
NI,FE-CODH -600mV state : 1 min Dioxygen Exposure
分子名称: Carbon monoxide dehydrogenase 2, FE (II) ION, FE(4)-NI(1)-S(5) CLUSTER, ...
著者Basak, Y, Jeoung, J.-H, Dobbek, H.
登録日2023-03-31
公開日2023-12-06
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Stepwise O 2 -Induced Rearrangement and Disassembly of the [NiFe 4 (OH)( mu 3 -S) 4 ] Active Site Cluster of CO Dehydrogenase.
Angew.Chem.Int.Ed.Engl., 62, 2023
3PVJ
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BU of 3pvj by Molmil
Crystal structure of the Fe(II)/alpha-ketoglutarate dependent taurine dioxygenase from Pseudomonas putida KT2440
分子名称: Alpha-ketoglutarate-dependent taurine dioxygenase, CHLORIDE ION
著者Knauer, S.H, Spiegelhauer, O, Schwarzinger, S, Haenzelmann, P, Dobbek, H.
登録日2010-12-07
公開日2011-12-21
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Biochemical and structural characterization of the Fe(II)/alpha-ketoglutarate dependent taurine dioxygenase from Pseudomonas putida KT2440
To be Published
3V15
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BU of 3v15 by Molmil
Crystal structure of the Fe(II)/alpha-ketoglutarate dependent taurine dioxygenase from Pseudomonas putida KT2440
分子名称: Alpha-ketoglutarate-dependent taurine dioxygenase
著者Knauer, S.H, Dobbek, H.
登録日2011-12-09
公開日2012-01-18
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献The Fe(II) / alpha-ketoglutarate dependent taurine dioxygenases from Pseudomonas putida and Escherichia coli are tetramers
Febs J., 279, 2012
5OBP
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BU of 5obp by Molmil
PCE reductive dehalogenase from S. multivorans with 6-hydroxybenzimidazolyl norcobamide cofactor
分子名称: 6-hydroxybenzimidazolyl-norcobamide, BENZAMIDINE, GLYCEROL, ...
著者Keller, S, Kunze, C, Bommer, M, Paetz, C, Menezes, R.C, Svatos, A, Dobbek, H, Schubert, T.
登録日2017-06-28
公開日2018-02-14
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.593 Å)
主引用文献Selective Utilization of Benzimidazolyl-Norcobamides as Cofactors by the Tetrachloroethene Reductive Dehalogenase of Sulfurospirillum multivorans.
J. Bacteriol., 200, 2018
5OBI
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BU of 5obi by Molmil
PCE reductive dehalogenase from S. multivorans with 5-METHOXYBENZIMIDAZOLYL-NORCOBAMIDE cofactor
分子名称: 5-Methoxybenzimidazolyl-norcobamide, BENZAMIDINE, GLYCEROL, ...
著者Keller, S, Kunze, C, Bommer, M, Paetz, C, Menezes, R.C, Svatos, A, Dobbek, H, Schubert, T.
登録日2017-06-27
公開日2018-02-14
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.599 Å)
主引用文献Selective Utilization of Benzimidazolyl-Norcobamides as Cofactors by the Tetrachloroethene Reductive Dehalogenase of Sulfurospirillum multivorans.
J. Bacteriol., 200, 2018
7B9A
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BU of 7b9a by Molmil
CooS-V with Xe-soaked
分子名称: 3,5-dioxa-7-thia-1-thionia-2$l^{2},4$l^{2},6$l^{3},8$l^{2}-tetraferrabicyclo[4.2.0]octane, BROMIDE ION, Carbon monoxide dehydrogenase, ...
著者Jeoung, J.H, Dobbek, H.
登録日2020-12-14
公開日2022-01-12
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献A Morphing [4Fe-3S-nO]-Cluster within a Carbon Monoxide Dehydrogenase Scaffold.
Angew.Chem.Int.Ed.Engl., 61, 2022
6G2G
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BU of 6g2g by Molmil
Fe-S assembly Cfd1
分子名称: Cytosolic Fe-S cluster assembly factor CFD1, IRON/SULFUR CLUSTER, SULFATE ION
著者Jeoung, J.H, Dobbek, H.
登録日2018-03-23
公開日2019-01-23
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.57 Å)
主引用文献Function and crystal structure of the dimeric P-loop ATPase CFD1 coordinating an exposed [4Fe-4S] cluster for transfer to apoproteins.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
3DTM
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BU of 3dtm by Molmil
Increased folding stability of TEM-1 beta-lactamase by in-vitro selection
分子名称: Beta-lactamase
著者Kather, I, Jakob, R.P, Dobbek, H, Schmid, F.X.
登録日2008-07-15
公開日2008-08-05
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Increased folding stability of TEM-1 beta-lactamase by in vitro selection
J.Mol.Biol., 383, 2008
3HRD
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BU of 3hrd by Molmil
Crystal structure of nicotinate dehydrogenase
分子名称: CALCIUM ION, DIOXOTHIOMOLYBDENUM(VI) ION, FE2/S2 (INORGANIC) CLUSTER, ...
著者Wagener, N, Pierik, A.J, Hille, R, Dobbek, H.
登録日2009-06-09
公開日2009-06-30
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The Mo-Se active site of nicotinate dehydrogenase
Proc.Natl.Acad.Sci.USA, 106, 2009
3I39
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BU of 3i39 by Molmil
NI,FE-CODH-320 MV+CN state
分子名称: CYANIDE ION, Carbon monoxide dehydrogenase 2, FE (II) ION, ...
著者Jeoung, J.-H, Dobbek, H.
登録日2009-06-30
公開日2009-08-11
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.36 Å)
主引用文献Structural basis of cyanide inhibition of Ni, Fe-containing carbon monoxide dehydrogenase
J.Am.Chem.Soc., 131, 2009
7YYL
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BU of 7yyl by Molmil
nucleotide-free DCCP:DCCP-R complex
分子名称: Dehydratase family protein, Double cubane cluster, IRON/SULFUR CLUSTER, ...
著者Jeoung, J.-H, Dobbek, H.
登録日2022-02-18
公開日2022-12-28
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3.25 Å)
主引用文献Structural basis for coupled ATP-driven electron transfer in the double-cubane cluster protein.
Proc.Natl.Acad.Sci.USA, 119, 2022

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