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6Z34
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BU of 6z34 by Molmil
CymD monoaromatic hydrocarbon channel
分子名称: CymD
著者van den Berg, B.
登録日2020-05-19
公開日2020-11-04
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.27 Å)
主引用文献Uptake of monoaromatic hydrocarbons during biodegradation by FadL channel-mediated lateral diffusion.
Nat Commun, 11, 2020
6Z38
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BU of 6z38 by Molmil
TodX deltaS2S3 mutant monoaromatic hydrocarbon channel
分子名称: TodX
著者van den Berg, B.
登録日2020-05-19
公開日2020-11-04
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Uptake of monoaromatic hydrocarbons during biodegradation by FadL channel-mediated lateral diffusion.
Nat Commun, 11, 2020
6Z37
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BU of 6z37 by Molmil
TodX monoaromatic hydrocarbon channel deltaS2 mutant
分子名称: TodX
著者van den Berg, B.
登録日2020-05-19
公開日2020-11-04
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (3.05 Å)
主引用文献Uptake of monoaromatic hydrocarbons during biodegradation by FadL channel-mediated lateral diffusion.
Nat Commun, 11, 2020
2W27
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BU of 2w27 by Molmil
CRYSTAL STRUCTURE OF THE BACILLUS SUBTILIS YKUI PROTEIN, WITH AN EAL DOMAIN, IN COMPLEX WITH SUBSTRATE C-DI-GMP AND CALCIUM
分子名称: CALCIUM ION, GUANOSINE-5'-MONOPHOSPHATE, YKUI PROTEIN
著者Padavattan, S, AndERSON, W.F, Schirmer, T.
登録日2008-10-24
公開日2009-02-24
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal Structures of Ykui and its Complex with Second Messenger C-Di-Gmp Suggests Catalytic Mechanism of Phosphodiester Bond Cleavage by Eal Domains.
J.Biol.Chem., 284, 2009
5AFE
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BU of 5afe by Molmil
Medium Resolution structure of the C-terminal family 65 Carbohydrate Binding Module (CBM65B) of endoglucanase Cel5A from Eubacterium cellulosolvens with a bound xyloglucan heptasaccharide (XXXG)
分子名称: CITRIC ACID, ENDOGLUCANASE CEL5A, alpha-D-xylopyranose-(1-6)-beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-[alpha-D-xylopyranose-(1-6)]beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
著者Venditto, I, Fontes, C.M.G.A, Gilbert, H.J, Najmudin, S.
登録日2015-01-21
公開日2015-02-04
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Understanding How Noncatalytic Carbohydrate Binding Modules Can Display Specificity for Xyloglucan
To be Published
6HTE
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BU of 6hte by Molmil
Sulfolobus solfataricus Tryptophan Synthase B2a
分子名称: DI(HYDROXYETHYL)ETHER, PYRIDOXAL-5'-PHOSPHATE, Tryptophan synthase beta chain 2
著者Fleming, J, Mayans, O, Bucher, R.
登録日2018-10-04
公開日2018-11-21
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.961 Å)
主引用文献Evolutionary Morphing of Tryptophan Synthase: Functional Mechanisms for the Enzymatic Channeling of Indole.
J.Mol.Biol., 430, 2018
6HUL
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BU of 6hul by Molmil
Sulfolobus solfataricus Tryptophan Synthase AB Complex
分子名称: PHOSPHATE ION, PYRIDOXAL-5'-PHOSPHATE, SERINE, ...
著者Fleming, J.R, Mayans, O.
登録日2018-10-08
公開日2018-11-07
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Evolutionary Morphing of Tryptophan Synthase: Functional Mechanisms for the Enzymatic Channeling of Indole.
J.Mol.Biol., 430, 2018
5T3R
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BU of 5t3r by Molmil
Crystal structure of BT1762-1763
分子名称: MAGNESIUM ION, SODIUM ION, SusC homolog, ...
著者van den Berg, B.
登録日2016-08-26
公開日2016-12-14
最終更新日2019-10-16
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structural basis for nutrient acquisition by dominant members of the human gut microbiota.
Nature, 541, 2017
5T4Y
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BU of 5t4y by Molmil
Crystal structure of BT1762-1763
分子名称: MAGNESIUM ION, SusC homolog, SusD homolog
著者van den Berg, B.
登録日2016-08-30
公開日2016-12-14
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structural basis for nutrient acquisition by dominant members of the human gut microbiota.
Nature, 541, 2017
5G56
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BU of 5g56 by Molmil
THE TETRA-MODULAR CELLULOSOMAL ARABINOXYLANASE CtXyl5A STRUCTURE AS REVEALED BY X-RAY CRYSTALLOGRAPHY
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, CARBOHYDRATE BINDING FAMILY 6
著者Bras, J.L.A, Gilbert, H.J, Ferreira, L.M.A, Fontes, C.M.G.A, Najmudin, S.
登録日2016-05-21
公開日2016-06-29
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.64 Å)
主引用文献The Mechanism by which Arabinoxylanases Can Recognise Highly Decorated Xylans.
J.Biol.Chem., 291, 2016
5AOT
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BU of 5aot by Molmil
Very high resolution structure of a novel carbohydrate binding module from Ruminococcus flavefaciens FD-1 endoglucanase Cel5A
分子名称: CACODYLATE ION, Carbohydrate binding module, GLYCEROL
著者Pires, A.J, Ribeiro, T, Thompson, A, Venditto, I, Fernandes, V.O, Bule, P, Santos, H, Alves, V.D, Pires, V, Ferreira, L.M.A, Fontes, C.M.G.A, Najmudin, S.
登録日2015-09-11
公開日2016-06-22
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.02 Å)
主引用文献Complexity of the Ruminococcus flavefaciens cellulosome reflects an expansion in glycan recognition.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
5AOS
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BU of 5aos by Molmil
Structure of a novel carbohydrate binding module from Ruminococcus flavefaciens FD-1 endoglucanase Cel5A solved at the As edge
分子名称: CACODYLATE ION, Carbohydrate binding module, GLYCEROL
著者Pires, A.J, Ribeiro, T, Thompson, A, Venditto, I, Fernandes, V.O, Bule, P, Santos, H, Alves, V.D, Pires, V, Ferreira, L.M.A, Fontes, C.M.G.A, Najmudin, S.
登録日2015-09-11
公開日2016-06-29
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.29 Å)
主引用文献Complexity of the Ruminococcus flavefaciens cellulosome reflects an expansion in glycan recognition.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
8RDV
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BU of 8rdv by Molmil
Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
分子名称: 16S rRNA, 23S rRNA, 5S rRNA, ...
著者Helena-Bueno, K, Rybak, M.Y, Gagnon, M.G, Hill, C.H, Melnikov, S.V.
登録日2023-12-08
公開日2024-02-21
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (2.6 Å)
主引用文献A new family of bacterial ribosome hibernation factors.
Nature, 626, 2024
6EUI
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BU of 6eui by Molmil
The GH43, Beta 1,3 Galactosidase, BT3683 with galactose
分子名称: Beta-glucanase, CALCIUM ION, beta-D-galactopyranose
著者Cartmell, A, Gilbert, H.J.
登録日2017-10-30
公開日2018-10-17
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation.
Nat Microbiol, 3, 2018
6EUJ
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BU of 6euj by Molmil
The GH43, Beta 1,3 Galactosidase, BT0265
分子名称: Beta-glucanase
著者Cartmell, A, Gilbert, H.J.
登録日2017-10-30
公開日2018-10-17
最終更新日2019-10-16
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation.
Nat Microbiol, 3, 2018
6EUF
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BU of 6euf by Molmil
The GH43, Beta 1,3 Galactosidase, BT0265
分子名称: Beta-glucanase, alpha-L-arabinofuranose-(1-3)-[alpha-L-arabinofuranose-(1-4)][beta-D-glucopyranuronic acid-(1-6)]beta-D-galactopyranose-(1-6)-beta-D-galactopyranose, alpha-L-rhamnopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-6)-[alpha-L-arabinofuranose-(1-3)][alpha-L-arabinofuranose-(1-4)]beta-D-galactopyranose-(1-6)-beta-D-galactopyranose
著者Cartmell, A, Gilbert, H.J.
登録日2017-10-30
公開日2018-10-17
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation.
Nat Microbiol, 3, 2018
6EUH
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BU of 6euh by Molmil
The GH43, Beta 1,3 Galactosidase, BT3683 with galactodeoxynojirimycin
分子名称: (2R,3S,4R,5S)-2-(hydroxymethyl)piperidine-3,4,5-triol, Beta-glucanase, CALCIUM ION
著者Cartmell, A, Gilbert, H.J.
登録日2017-10-30
公開日2018-10-17
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation.
Nat Microbiol, 3, 2018
6EUG
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BU of 6eug by Molmil
The GH43, Beta 1,3 Galactosidase, BT3683 with galactoimidazole
分子名称: Beta-glucanase, GLUCOIMIDAZOLE
著者Cartmell, A, Gilbert, H.J.
登録日2017-10-30
公開日2018-10-17
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.61 Å)
主引用文献A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation.
Nat Microbiol, 3, 2018
7QGQ
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BU of 7qgq by Molmil
Extended H/L (SLPH/SLPL) complex from C. difficile (CD630 strain) fit into R20291 S-layer negative stain map
分子名称: Precursor of the S-layer proteins
著者Banerji, O, Wilson, J.S, Bullough, P.A.
登録日2021-12-09
公開日2022-04-06
実験手法ELECTRON CRYSTALLOGRAPHY
主引用文献Structure and assembly of the S-layer in C. difficile.
Nat Commun, 13, 2022
5MDP
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BU of 5mdp by Molmil
Crystal structure of in vitro folded Chitoporin VhChip from Vibrio harveyi (crystal form II)
分子名称: Chitoporin
著者Zahn, M, van den Berg, B.
登録日2016-11-13
公開日2017-12-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (3.08 Å)
主引用文献Structural basis for chitin acquisition by marine Vibrio species.
Nat Commun, 9, 2018
5MDS
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BU of 5mds by Molmil
Crystal structure of outer membrane expressed Chitoporin VhChip from Vibrio harveyi in complex with chitotetraose
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitoporin
著者Zahn, M, van den Berg, B.
登録日2016-11-13
公開日2017-12-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural basis for chitin acquisition by marine Vibrio species.
Nat Commun, 9, 2018
5MDR
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BU of 5mdr by Molmil
Crystal structure of in vitro folded Chitoporin VhChip from Vibrio harveyi in complex with chitohexaose
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitoporin, ...
著者Zahn, M, van den Berg, B.
登録日2016-11-13
公開日2017-12-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural basis for chitin acquisition by marine Vibrio species.
Nat Commun, 9, 2018
6EX6
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BU of 6ex6 by Molmil
The GH127, Beta-arabinofuranosidase, BT3674
分子名称: Six-hairpin glycosidase, ZINC ION
著者Munoz-Munoz, J, Gilbert, H.J.
登録日2017-11-07
公開日2018-11-21
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.16 Å)
主引用文献The cellular location of endo-acting galactanases confers keystone or recipient status to arabinogalactan degrading organisms of the human gut microbiota
To Be Published
5MDO
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BU of 5mdo by Molmil
Crystal structure of in vitro folded Chitoporin VhChip from Vibrio harveyi (crystal form I)
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Chitoporin, SODIUM ION
著者Zahn, M, van den Berg, B.
登録日2016-11-13
公開日2017-12-20
最終更新日2018-01-24
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structural basis for chitin acquisition by marine Vibrio species.
Nat Commun, 9, 2018
5MDQ
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BU of 5mdq by Molmil
Crystal structure of outer membrane expressed Chitoporin VhChip from Vibrio harveyi
分子名称: Chitoporin, SODIUM ION
著者Zahn, M, van den Berg, B.
登録日2016-11-13
公開日2017-12-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural basis for chitin acquisition by marine Vibrio species.
Nat Commun, 9, 2018

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