6JK5
| Ca2+-dependent type II antifreeze protein (Ca2+-free form) | 分子名称: | SULFATE ION, Type II antifreeze protein | 著者 | Arai, T, Tsuda, S, Kondo, H, Nishimiya, Y. | 登録日 | 2019-02-27 | 公開日 | 2019-06-26 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.25 Å) | 主引用文献 | Calcium-Binding Generates the Semi-Clathrate Waters on a Type II Antifreeze Protein to Adsorb onto an Ice Crystal Surface. Biomolecules, 9, 2019
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6JK4
| Ca2+-dependent type II antifreeze protein | 分子名称: | CALCIUM ION, Type II antifreeze protein | 著者 | Arai, T, Tsuda, S, Kondo, H, Nishimiya, Y. | 登録日 | 2019-02-27 | 公開日 | 2019-06-26 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.06 Å) | 主引用文献 | Calcium-Binding Generates the Semi-Clathrate Waters on a Type II Antifreeze Protein to Adsorb onto an Ice Crystal Surface. Biomolecules, 9, 2019
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3ACS
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4WD3
| Crystal structure of an L-amino acid ligase RizA | 分子名称: | L-amino acid ligase | 著者 | Kagawa, W, Arai, T, Kino, K, Kurumizaka, H. | 登録日 | 2014-09-06 | 公開日 | 2015-09-09 | 最終更新日 | 2020-01-01 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | Structure of RizA, an L-amino-acid ligase from Bacillus subtilis. Acta Crystallogr.,Sect.F, 71, 2015
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3OQJ
| Crystal structure of B. licheniformis CDPS yvmC-BLIC in complex with CAPSO | 分子名称: | (2S)-3-(cyclohexylamino)-2-hydroxypropane-1-sulfonic acid, Putative uncharacterized protein yvmC | 著者 | Bonnefond, L, Arai, T, Suzuki, T, Ishitani, R, Nureki, O. | 登録日 | 2010-09-03 | 公開日 | 2011-02-23 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.399 Å) | 主引用文献 | Structural basis for nonribosomal peptide synthesis by an aminoacyl-tRNA synthetase paralog. Proc.Natl.Acad.Sci.USA, 108, 2011
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3OQI
| Crystal structure of B. licheniformis CDPS yvmC-BLIC in complex with CHES | 分子名称: | 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, GLYCEROL, Putative uncharacterized protein yvmC | 著者 | Bonnefond, L, Arai, T, Suzuki, T, Ishitani, R, Nureki, O. | 登録日 | 2010-09-03 | 公開日 | 2011-02-23 | 最終更新日 | 2017-11-08 | 実験手法 | X-RAY DIFFRACTION (1.701 Å) | 主引用文献 | Structural basis for nonribosomal peptide synthesis by an aminoacyl-tRNA synthetase paralog. Proc.Natl.Acad.Sci.USA, 108, 2011
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3OQH
| Crystal structure of B. licheniformis CDPS yvmC-BLIC | 分子名称: | GLYCEROL, Putative uncharacterized protein yvmC | 著者 | Bonnefond, L, Arai, T, Suzuki, T, Ishitani, R, Nureki, O. | 登録日 | 2010-09-03 | 公開日 | 2011-02-23 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.901 Å) | 主引用文献 | Structural basis for nonribosomal peptide synthesis by an aminoacyl-tRNA synthetase paralog. Proc.Natl.Acad.Sci.USA, 108, 2011
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2Z1E
| Crystal structure of HypE from Thermococcus kodakaraensis (outward form) | 分子名称: | Hydrogenase expression/formation protein HypE | 著者 | Watanabe, S, Matsumi, R, Arai, T, Atomi, H, Imanaka, T, Miki, K. | 登録日 | 2007-05-08 | 公開日 | 2007-07-17 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.55 Å) | 主引用文献 | Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling Mol.Cell, 27, 2007
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2Z1C
| Crystal structure of HypC from Thermococcus kodakaraensis KOD1 | 分子名称: | GLYCEROL, Hydrogenase expression/formation protein HypC, TETRAETHYLENE GLYCOL | 著者 | Watanabe, S, Matsumi, R, Arai, T, Atomi, H, Imanaka, T, Miki, K. | 登録日 | 2007-05-08 | 公開日 | 2007-07-17 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling Mol.Cell, 27, 2007
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2Z1F
| Crystal structure of HypE from Thermococcus kodakaraensis (inward form) | 分子名称: | Hydrogenase expression/formation protein HypE | 著者 | Watanabe, S, Matsumi, R, Arai, T, Atomi, H, Imanaka, T, Miki, K. | 登録日 | 2007-05-08 | 公開日 | 2007-07-17 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling Mol.Cell, 27, 2007
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2Z1D
| Crystal structure of [NiFe] hydrogenase maturation protein, HypD from Thermococcus kodakaraensis | 分子名称: | Hydrogenase expression/formation protein hypD, IRON/SULFUR CLUSTER | 著者 | Watanabe, S, Matsumi, R, Arai, T, Atomi, H, Imanaka, T, Miki, K. | 登録日 | 2007-05-08 | 公開日 | 2007-07-17 | 最終更新日 | 2014-11-12 | 実験手法 | X-RAY DIFFRACTION (2.07 Å) | 主引用文献 | Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling Mol.Cell, 27, 2007
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3A43
| Crystal structure of HypA | 分子名称: | Hydrogenase nickel incorporation protein hypA, ZINC ION | 著者 | Watanabe, S, Arai, T, Matsumi, R, Aromi, H, Imanaka, T, Miki, K. | 登録日 | 2009-06-30 | 公開日 | 2009-10-06 | 最終更新日 | 2016-12-21 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Crystal structure of HypA, a nickel-binding metallochaperone for [NiFe] hydrogenase maturation. J.Mol.Biol., 394, 2009
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7BWY
| Crystal structure of ice-binding protein from an Antarctic ascomycete, Antarctomyces psychrotrophicus. | 分子名称: | GLYCEROL, Ice-binding protein isoform1a | 著者 | Yamauchi, A, Arai, T, Kondo, H, Tsuda, S. | 登録日 | 2020-04-16 | 公開日 | 2020-05-27 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.02 Å) | 主引用文献 | An Ice-Binding Protein from an Antarctic Ascomycete Is Fine-Tuned to Bind to Specific Water Molecules Located in the Ice Prism Planes. Biomolecules, 10, 2020
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7BWX
| Crystal structure of ice-binding protein from an Antarctic ascomycete, Antarctomyces psychrotrophicus. | 分子名称: | GLYCEROL, Ice-binding protein isoform1a, SULFATE ION | 著者 | Yamauchi, A, Arai, T, Kondo, H, Tsuda, S. | 登録日 | 2020-04-16 | 公開日 | 2020-05-27 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.904 Å) | 主引用文献 | An Ice-Binding Protein from an Antarctic Ascomycete Is Fine-Tuned to Bind to Specific Water Molecules Located in the Ice Prism Planes. Biomolecules, 10, 2020
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7DC5
| Crystal structure of fungal antifreeze protein with intermediate activity | 分子名称: | Antifreeze protein, SULFATE ION | 著者 | Khan, N.M.M.U, Arai, T, Tsuda, S, Kondo, H. | 登録日 | 2020-10-23 | 公開日 | 2021-10-27 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.54 Å) | 主引用文献 | Characterization of microbial antifreeze protein with intermediate activity suggests that a bound-water network is essential for hyperactivity. Sci Rep, 11, 2021
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7DDB
| Crystal structure of fungal antifreeze protein with intermediate activity | 分子名称: | Antifreeze protein, MAGNESIUM ION | 著者 | Khan, N.M.M.U, Arai, T, Tsuda, S, Kondo, H. | 登録日 | 2020-10-28 | 公開日 | 2021-11-03 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.72 Å) | 主引用文献 | Characterization of microbial antifreeze protein with intermediate activity suggests that a bound-water network is essential for hyperactivity. Sci Rep, 11, 2021
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3A44
| Crystal structure of HypA in the dimeric form | 分子名称: | Hydrogenase nickel incorporation protein hypA, ZINC ION | 著者 | Watanabe, S, Arai, T, Matsumi, R, Atomi, H, Imanaka, T, Miki, K. | 登録日 | 2009-06-30 | 公開日 | 2009-10-06 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (3.31 Å) | 主引用文献 | Crystal structure of HypA, a nickel-binding metallochaperone for [NiFe] hydrogenase maturation. J.Mol.Biol., 394, 2009
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3VOT
| Crystal structure of L-amino acid ligase from Bacillus licheniformis | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, CALCIUM ION, CHLORIDE ION, ... | 著者 | Suzuki, M, Takahashi, Y, Noguchi, A, Arai, T, Yagasaki, M, Kino, K, Saito, J. | 登録日 | 2012-02-08 | 公開日 | 2012-11-07 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | The structure of L-amino-acid ligase from Bacillus licheniformis Acta Crystallogr.,Sect.D, 68, 2012
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3ACT
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3AFJ
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3S7T
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5XQN
| Crystal structure of Notched-fin eelpout type III antifreeze protein (NFE6, AFP), C2221 form. | 分子名称: | Ice-structuring protein, SULFATE ION | 著者 | Adachi, M, Kondo, H, Tsuda, S. | 登録日 | 2017-06-07 | 公開日 | 2018-05-16 | 最終更新日 | 2024-03-27 | 実験手法 | X-RAY DIFFRACTION (1.19 Å) | 主引用文献 | Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein Proc. Natl. Acad. Sci. U.S.A., 115, 2018
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5XQR
| Crystal structure of Notched-fin eelpout type III antifreeze protein A20V mutant (NFE6, AFP), C2221 form | 分子名称: | ACETATE ION, Ice-structuring protein | 著者 | Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S. | 登録日 | 2017-06-07 | 公開日 | 2018-05-16 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.3 Å) | 主引用文献 | Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein Proc. Natl. Acad. Sci. U.S.A., 115, 2018
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5XQP
| Crystal structure of Notched-fin eelpout type III antifreeze protein (NFE6, AFP), P212121 form | 分子名称: | Ice-structuring protein, SULFATE ION | 著者 | Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S. | 登録日 | 2017-06-07 | 公開日 | 2018-05-16 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1 Å) | 主引用文献 | Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein Proc. Natl. Acad. Sci. U.S.A., 115, 2018
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5XQU
| Crystal structure of Notched-fin eelpout type III antifreeze protein A20I mutant (NFE6, AFP), P212121 form | 分子名称: | Ice-structuring protein | 著者 | Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S. | 登録日 | 2017-06-07 | 公開日 | 2018-05-16 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1 Å) | 主引用文献 | Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein Proc. Natl. Acad. Sci. U.S.A., 115, 2018
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