8GXX
| 3 nucleotide-bound V1EG of V/A-ATPase from Thermus thermophilus. | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... | Authors: | Nakanishi, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-09-21 | Release date: | 2023-01-25 | Last modified: | 2023-02-15 | Method: | ELECTRON MICROSCOPY (3 Å) | Cite: | Cryo-EM analysis of V/A-ATPase intermediates reveals the transition of the ground-state structure to steady-state structures by sequential ATP binding. J.Biol.Chem., 299, 2023
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8GXY
| 2 sulfate-bound V1EG of V/A-ATPase from Thermus thermophilus. | Descriptor: | SULFATE ION, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ... | Authors: | Nakanishi, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-09-21 | Release date: | 2023-01-25 | Last modified: | 2023-02-15 | Method: | ELECTRON MICROSCOPY (2.8 Å) | Cite: | Cryo-EM analysis of V/A-ATPase intermediates reveals the transition of the ground-state structure to steady-state structures by sequential ATP binding. J.Biol.Chem., 299, 2023
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8GXU
| 1 ATP-bound V1EG of V/A-ATPase from Thermus thermophilus | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, SULFATE ION, V-type ATP synthase alpha chain, ... | Authors: | Nakanishi, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-09-21 | Release date: | 2023-01-25 | Last modified: | 2023-02-15 | Method: | ELECTRON MICROSCOPY (2.5 Å) | Cite: | Cryo-EM analysis of V/A-ATPase intermediates reveals the transition of the ground-state structure to steady-state structures by sequential ATP binding. J.Biol.Chem., 299, 2023
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8HH4
| F1 domain of FoF1-ATPase from Bacillus PS3,101 degrees, highATP | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ... | Authors: | Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-11-16 | Release date: | 2023-07-19 | Method: | ELECTRON MICROSCOPY (3.1 Å) | Cite: | Rotation mechanism of ATP synthases driven by ATP hydrolysis To Be Published
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8HHA
| F1 domain of FoF1-ATPase from Bacillus PS3,120 degrees,lowATP | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ... | Authors: | Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-11-16 | Release date: | 2023-07-19 | Method: | ELECTRON MICROSCOPY (3.4 Å) | Cite: | Rotation mechanism of ATP synthases driven by ATP hydrolysis To Be Published
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8HH3
| F1 domain of FoF1-ATPase from Bacillus PS3,90 degrees,highATP | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ... | Authors: | Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-11-16 | Release date: | 2023-07-19 | Method: | ELECTRON MICROSCOPY (4.3 Å) | Cite: | Rotation mechanism of ATP synthases driven by ATP hydrolysis To Be Published
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8HH1
| FoF1-ATPase from Bacillus PS3, 81 degrees, highATP | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ATP synthase subunit alpha, ... | Authors: | Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-11-16 | Release date: | 2023-07-19 | Method: | ELECTRON MICROSCOPY (2.9 Å) | Cite: | Rotation mechanism of ATP synthases driven by ATP hydrolysis To Be Published
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8HHB
| F1 domain of FoF1-ATPase from Bacillus PS3,step waiting,lowATP | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ... | Authors: | Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-11-16 | Release date: | 2023-07-19 | Method: | ELECTRON MICROSCOPY (3.5 Å) | Cite: | Rotation mechanism of ATP synthases driven by ATP hydrolysis To Be Published
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8HH9
| F1 domain of FoF1-ATPase from Bacillus PS3, 90 degrees, low ATP | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ... | Authors: | Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-11-16 | Release date: | 2023-07-19 | Method: | ELECTRON MICROSCOPY (3.6 Å) | Cite: | Rotation mechanism of ATP synthases driven by ATP hydrolysis To Be Published
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8HH2
| F1 domain of FoF1-ATPase from Bacillus PS3,post-hyd,highATP | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ... | Authors: | Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-11-16 | Release date: | 2023-07-19 | Method: | ELECTRON MICROSCOPY (3 Å) | Cite: | Rotation mechanism of ATP synthases driven by ATP hydrolysis To Be Published
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8HHC
| F1 domain of FoF1-ATPase from Bacillus PS3,post-hyd',lowATP | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ATP synthase subunit alpha, ... | Authors: | Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-11-16 | Release date: | 2023-07-19 | Method: | ELECTRON MICROSCOPY (3.3 Å) | Cite: | Rotation mechanism of ATP synthases driven by ATP hydrolysis To Be Published
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8HH6
| F1 domain of FoF1-ATPase from Bacillus PS3,step waiting,highATP | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ... | Authors: | Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-11-16 | Release date: | 2023-07-26 | Method: | ELECTRON MICROSCOPY (2.9 Å) | Cite: | Rotation mechanism of ATP synthases driven by ATP hydrolysis To Be Published
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8HH7
| F1 domain of FoF1-ATPase from Bacillus PS3, 81 degrees, lowATP | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ... | Authors: | Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-11-16 | Release date: | 2023-07-26 | Method: | ELECTRON MICROSCOPY (2.5 Å) | Cite: | Rotation mechanism of ATP synthases driven by ATP hydrolysis To Be Published
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8HH8
| F1 domain of FoF1-ATPase from Bacillus PS3,post-hyd,lowATP | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ... | Authors: | Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-11-16 | Release date: | 2023-07-26 | Method: | ELECTRON MICROSCOPY (2.8 Å) | Cite: | Rotation mechanism of ATP synthases driven by ATP hydrolysis To Be Published
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8HH5
| F1 domain of FoF1-ATPase from Bacillus PS3,120 degrees,highATP | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ... | Authors: | Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-11-16 | Release date: | 2023-07-26 | Method: | ELECTRON MICROSCOPY (2.9 Å) | Cite: | Rotation mechanism of ATP synthases driven by ATP hydrolysis To Be Published
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7XKO
| F1 domain of epsilon C-terminal domain deleted FoF1 from Bacillus PS3,state1,nucleotide depeleted | Descriptor: | ATP synthase gamma chain, ATP synthase subunit alpha, ATP synthase subunit beta, ... | Authors: | Nakano, A, Kishikawa, J, Nakanishi, A, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-04-20 | Release date: | 2022-09-21 | Last modified: | 2023-10-11 | Method: | ELECTRON MICROSCOPY (3.4 Å) | Cite: | Structural basis of unisite catalysis of bacterial F 0 F 1 -ATPase. Pnas Nexus, 1, 2022
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7XKR
| F1 domain of FoF1-ATPase with the up form of epsilon subunit from Bacillus PS3 | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ... | Authors: | Nakano, A, Kishikawa, J, Nakanishi, A, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-04-20 | Release date: | 2022-09-21 | Last modified: | 2023-10-11 | Method: | ELECTRON MICROSCOPY (2.6 Å) | Cite: | Structural basis of unisite catalysis of bacterial F 0 F 1 -ATPase. Pnas Nexus, 1, 2022
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7XKP
| F1 domain of epsilon C-terminal domain deleted FoF1 from Bacillus PS3,state1,unisite condition | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ATP synthase gamma chain, ATP synthase subunit alpha, ... | Authors: | Nakano, A, Kishikawa, J, Nakanishi, A, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-04-20 | Release date: | 2022-09-21 | Last modified: | 2023-10-11 | Method: | ELECTRON MICROSCOPY (3 Å) | Cite: | Structural basis of unisite catalysis of bacterial F 0 F 1 -ATPase. Pnas Nexus, 1, 2022
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7XKH
| Nucleotide-depleted F1 domain of FoF1-ATPase from Bacillus PS3, state1 | Descriptor: | ATP synthase epsilon chain, ATP synthase gamma chain, ATP synthase subunit alpha, ... | Authors: | Nakano, A, Kishikawa, J, Nakanishi, A, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-04-19 | Release date: | 2022-09-21 | Last modified: | 2023-10-11 | Method: | ELECTRON MICROSCOPY (3.1 Å) | Cite: | Structural basis of unisite catalysis of bacterial F 0 F 1 -ATPase. Pnas Nexus, 1, 2022
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7XKQ
| F1 domain of FoF1-ATPase with the down form of epsilon subunit from Bacillus PS3 | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ... | Authors: | Nakano, A, Kishikawa, J, Nakanishi, A, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-04-20 | Release date: | 2022-09-21 | Last modified: | 2023-10-11 | Method: | ELECTRON MICROSCOPY (3.3 Å) | Cite: | Structural basis of unisite catalysis of bacterial F 0 F 1 -ATPase. Pnas Nexus, 1, 2022
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1IU4
| Crystal Structure Analysis of the Microbial Transglutaminase | Descriptor: | microbial transglutaminase | Authors: | Kashiwagi, T, Yokoyama, K, Ishikawa, K, Ono, K, Ejima, D, Matsui, H, Suzuki, E. | Deposit date: | 2002-02-27 | Release date: | 2002-08-27 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Crystal structure of microbial transglutaminase from Streptoverticillium mobaraense J.Biol.Chem., 277, 2002
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7VAU
| V1EG of V/A-ATPase from Thermus thermophilus at low ATP concentration, state2-2 | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... | Authors: | Kishikawa, J, Nakanishi, A, Nakano, A, Saeki, S, Furuta, A, Kato, T, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2021-08-30 | Release date: | 2022-07-13 | Method: | ELECTRON MICROSCOPY (3.3 Å) | Cite: | Structural snapshots of V/A-ATPase reveal the rotary catalytic mechanism of rotary ATPases. Nat Commun, 13, 2022
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7VAK
| Nucleotide-free V1EG domain of V/A-ATPase from Thermus thermophilus, state2 | Descriptor: | V-type ATP synthase alpha chain, V-type ATP synthase beta chain, V-type ATP synthase subunit D, ... | Authors: | Kishikawa, J, Nakanishi, A, Nakano, A, Saeki, S, Furuta, A, Kato, T, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2021-08-30 | Release date: | 2022-07-13 | Method: | ELECTRON MICROSCOPY (4.7 Å) | Cite: | Structural snapshots of V/A-ATPase reveal the rotary catalytic mechanism of rotary ATPases. Nat Commun, 13, 2022
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7VAW
| V1EG domain of V/A-ATPase from Thermus thermophilus at saturated ATP-gamma-S condition, state1-1 | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ... | Authors: | Kishikawa, J, Nakanishi, A, Nakano, A, Saeki, S, Furuta, A, Kato, T, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2021-08-30 | Release date: | 2022-07-13 | Method: | ELECTRON MICROSCOPY (2.7 Å) | Cite: | Structural snapshots of V/A-ATPase reveal the rotary catalytic mechanism of rotary ATPases. Nat Commun, 13, 2022
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7VAP
| V1EG of V/A-ATPase from Thermus thermophilus, high ATP, state2-2 | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... | Authors: | Kishikawa, J, Nakanishi, A, Nakano, A, Saeki, S, Furuta, A, Kato, T, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2021-08-30 | Release date: | 2022-07-13 | Method: | ELECTRON MICROSCOPY (3 Å) | Cite: | Structural snapshots of V/A-ATPase reveal the rotary catalytic mechanism of rotary ATPases. Nat Commun, 13, 2022
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