2XAX
 
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2XAW
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2XAZ
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2XAV
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2XAP
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2XAK
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2X0X
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2XAY
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2XOF
 | | Ribonucleotide reductase Y122NO2Y modified R2 subunit of E. coli | | 分子名称: | MU-OXO-DIIRON, RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT BETA | | 著者 | Yokoyama, K, Uhlin, U, Stubbe, J. | | 登録日 | 2010-08-15 | | 公開日 | 2010-08-25 | | 最終更新日 | 2023-12-20 | | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | | 主引用文献 | A Hot Oxidant, 3-No(2)Y(122) Radical, Unmasks Conformational Gating in Ribonucleotide Reductase.
J.Am.Chem.Soc., 132, 2010
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4V4O
 | | Crystal Structure of the Chaperonin Complex Cpn60/Cpn10/(ADP)7 from Thermus Thermophilus | | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, DIMETHYL SULFOXIDE, MAGNESIUM ION, ... | | 著者 | Shimamura, T, Koike-Takeshita, A, Yokoyama, K, Masui, R, Murai, N, Yoshida, M, Taguchi, H, Iwata, S. | | 登録日 | 2004-05-23 | | 公開日 | 2014-07-09 | | 最終更新日 | 2024-03-20 | | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | | 主引用文献 | Crystal structure of the native chaperonin complex from Thermus thermophilus revealed unexpected asymmetry at the cis-cavity
STRUCTURE, 12, 2004
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1G0D
 | | CRYSTAL STRUCTURE OF RED SEA BREAM TRANSGLUTAMINASE | | 分子名称: | PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE, SULFATE ION | | 著者 | Noguchi, K, Ishikawa, K, Yokoyama, K, Ohtsuka, T, Nio, N, Suzuki, E. | | 登録日 | 2000-10-06 | | 公開日 | 2001-05-23 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | | 主引用文献 | Crystal structure of red sea bream transglutaminase.
J.Biol.Chem., 276, 2001
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4PYD
 | | MoaC in complex with cPMP crystallized in space group P212121 | | 分子名称: | (2R,4AR,5AR,11AR,12AS)-8-AMINO-2-HYDROXY-4A,5A,9,11,11A,12A-HEXAHYDRO[1,3,2]DIOXAPHOSPHININO[4',5':5,6]PYRANO[3,2-G]PTERIDINE-10,12(4H,6H)-DIONE 2-OXIDE, 1,2-ETHANEDIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, ... | | 著者 | Tonthat, N.K, Hover, B.M, Yokoyama, K, Schumacher, M.A. | | 登録日 | 2014-03-26 | | 公開日 | 2015-04-29 | | 最終更新日 | 2023-09-20 | | 実験手法 | X-RAY DIFFRACTION (3.186 Å) | | 主引用文献 | Mechanism of pyranopterin ring formation in molybdenum cofactor biosynthesis.
Proc.Natl.Acad.Sci.USA, 112, 2015
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4PYA
 | | MoaC K51A in complex with 3',8-cH2GTP | | 分子名称: | (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate, 1,2-ETHANEDIOL, Molybdenum cofactor biosynthesis protein MoaC | | 著者 | Tonthat, N.K, Hover, B.M, Yokoyama, K, Schumacher, M.A. | | 登録日 | 2014-03-26 | | 公開日 | 2015-04-29 | | 最終更新日 | 2023-09-20 | | 実験手法 | X-RAY DIFFRACTION (1.789 Å) | | 主引用文献 | Mechanism of pyranopterin ring formation in molybdenum cofactor biosynthesis.
Proc.Natl.Acad.Sci.USA, 112, 2015
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3GQB
 | | Crystal Structure of the A3B3 complex from V-ATPase | | 分子名称: | V-type ATP synthase alpha chain, V-type ATP synthase beta chain | | 著者 | Meher, M, Akimoto, S, Iwata, M, Nagata, K, Hori, Y, Yoshida, M, Yokoyama, S, Iwata, S, Yokoyama, K. | | 登録日 | 2009-03-24 | | 公開日 | 2009-11-24 | | 最終更新日 | 2024-02-21 | | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | | 主引用文献 | Crystal structure of A(3)B(3) complex of V-ATPase from Thermus thermophilus.
Embo J., 28, 2009
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8GXU
 | | 1 ATP-bound V1EG of V/A-ATPase from Thermus thermophilus | | 分子名称: | ADENOSINE-5'-TRIPHOSPHATE, SULFATE ION, V-type ATP synthase alpha chain, ... | | 著者 | Nakanishi, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | | 登録日 | 2022-09-21 | | 公開日 | 2023-01-25 | | 最終更新日 | 2023-02-15 | | 実験手法 | ELECTRON MICROSCOPY (2.5 Å) | | 主引用文献 | Cryo-EM analysis of V/A-ATPase intermediates reveals the transition of the ground-state structure to steady-state structures by sequential ATP binding.
J.Biol.Chem., 299, 2023
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8GXW
 | | 2 ATP-bound V1EG of V/A-ATPase from Thermus thermophilus | | 分子名称: | ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, SULFATE ION, ... | | 著者 | Nakanishi, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | | 登録日 | 2022-09-21 | | 公開日 | 2023-01-25 | | 最終更新日 | 2023-02-15 | | 実験手法 | ELECTRON MICROSCOPY (2.7 Å) | | 主引用文献 | Cryo-EM analysis of V/A-ATPase intermediates reveals the transition of the ground-state structure to steady-state structures by sequential ATP binding.
J.Biol.Chem., 299, 2023
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8GXY
 | | 2 sulfate-bound V1EG of V/A-ATPase from Thermus thermophilus. | | 分子名称: | SULFATE ION, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ... | | 著者 | Nakanishi, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | | 登録日 | 2022-09-21 | | 公開日 | 2023-01-25 | | 最終更新日 | 2023-02-15 | | 実験手法 | ELECTRON MICROSCOPY (2.8 Å) | | 主引用文献 | Cryo-EM analysis of V/A-ATPase intermediates reveals the transition of the ground-state structure to steady-state structures by sequential ATP binding.
J.Biol.Chem., 299, 2023
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8GXZ
 | | 1 sulfate and 1 ATP bound V1EG of V/A-ATPase from Thermus thermophilus. | | 分子名称: | ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, SULFATE ION, ... | | 著者 | Nakanishi, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | | 登録日 | 2022-09-21 | | 公開日 | 2023-01-25 | | 最終更新日 | 2023-02-15 | | 実験手法 | ELECTRON MICROSCOPY (3.1 Å) | | 主引用文献 | Cryo-EM analysis of V/A-ATPase intermediates reveals the transition of the ground-state structure to steady-state structures by sequential ATP binding.
J.Biol.Chem., 299, 2023
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8GXX
 | | 3 nucleotide-bound V1EG of V/A-ATPase from Thermus thermophilus. | | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... | | 著者 | Nakanishi, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | | 登録日 | 2022-09-21 | | 公開日 | 2023-01-25 | | 最終更新日 | 2023-02-15 | | 実験手法 | ELECTRON MICROSCOPY (3 Å) | | 主引用文献 | Cryo-EM analysis of V/A-ATPase intermediates reveals the transition of the ground-state structure to steady-state structures by sequential ATP binding.
J.Biol.Chem., 299, 2023
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8HHB
 | | F1 domain of FoF1-ATPase from Bacillus PS3,step waiting,lowATP | | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ... | | 著者 | Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | | 登録日 | 2022-11-16 | | 公開日 | 2023-07-19 | | 実験手法 | ELECTRON MICROSCOPY (3.5 Å) | | 主引用文献 | Rotation mechanism of ATP synthases driven by ATP hydrolysis
To Be Published
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8HHA
 | | F1 domain of FoF1-ATPase from Bacillus PS3,120 degrees,lowATP | | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ... | | 著者 | Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | | 登録日 | 2022-11-16 | | 公開日 | 2023-07-19 | | 実験手法 | ELECTRON MICROSCOPY (3.4 Å) | | 主引用文献 | Rotation mechanism of ATP synthases driven by ATP hydrolysis
To Be Published
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8HH6
 | | F1 domain of FoF1-ATPase from Bacillus PS3,step waiting,highATP | | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ... | | 著者 | Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | | 登録日 | 2022-11-16 | | 公開日 | 2023-07-26 | | 実験手法 | ELECTRON MICROSCOPY (2.9 Å) | | 主引用文献 | Rotation mechanism of ATP synthases driven by ATP hydrolysis
To Be Published
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8HH9
 | | F1 domain of FoF1-ATPase from Bacillus PS3, 90 degrees, low ATP | | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ... | | 著者 | Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | | 登録日 | 2022-11-16 | | 公開日 | 2023-07-19 | | 実験手法 | ELECTRON MICROSCOPY (3.6 Å) | | 主引用文献 | Rotation mechanism of ATP synthases driven by ATP hydrolysis
To Be Published
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8HH3
 | | F1 domain of FoF1-ATPase from Bacillus PS3,90 degrees,highATP | | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ... | | 著者 | Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | | 登録日 | 2022-11-16 | | 公開日 | 2023-07-19 | | 実験手法 | ELECTRON MICROSCOPY (4.3 Å) | | 主引用文献 | Rotation mechanism of ATP synthases driven by ATP hydrolysis
To Be Published
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8HH1
 | | FoF1-ATPase from Bacillus PS3, 81 degrees, highATP | | 分子名称: | ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ATP synthase subunit alpha, ... | | 著者 | Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | | 登録日 | 2022-11-16 | | 公開日 | 2023-07-19 | | 実験手法 | ELECTRON MICROSCOPY (2.9 Å) | | 主引用文献 | Rotation mechanism of ATP synthases driven by ATP hydrolysis
To Be Published
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