1F2D
 
 | | 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE | | 分子名称: | 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE, PYRIDOXAL-5'-PHOSPHATE, SULFATE ION | | 著者 | Yao, M, Ose, T, Sugimoto, H, Horiuchi, A, Nakagawa, A, Yokoi, D, Murakami, T, Honma, M, Wakatsuki, S, Tanaka, I. | | 登録日 | 2000-05-24 | | 公開日 | 2000-12-20 | | 最終更新日 | 2011-07-13 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Crystal structure of 1-aminocyclopropane-1-carboxylate deaminase from Hansenula saturnus.
J.Biol.Chem., 275, 2000
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1IZ6
 | | Crystal Structure of Translation Initiation Factor 5A from Pyrococcus Horikoshii | | 分子名称: | Initiation Factor 5A | | 著者 | Yao, M, Ohsawa, A, Kikukawa, S, Tanaka, I, Kimura, M. | | 登録日 | 2002-09-25 | | 公開日 | 2003-01-28 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Crystal Structure of Hyperthermophilic Archaeal Initiation Factor 5A: A Homologue of Eukaryotic Initiation Factor 5A (eIF-5A)
J.BIOCHEM.(TOKYO), 133, 2003
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1WLS
 | | Crystal structure of L-asparaginase I homologue protein from Pyrococcus horikoshii | | 分子名称: | L-asparaginase | | 著者 | Yao, M, Morita, H, Yasutake, Y, Tanaka, I. | | 登録日 | 2004-06-29 | | 公開日 | 2005-03-15 | | 最終更新日 | 2011-07-13 | | 実験手法 | X-RAY DIFFRACTION (2.16 Å) | | 主引用文献 | Structure of the type I L-asparaginase from the hyperthermophilic archaeon Pyrococcus horikoshii at 2.16 angstroms resolution.
Acta Crystallogr.,Sect.D, 61, 2005
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2ZQ0
 | | Crystal structure of SusB complexed with acarbose | | 分子名称: | 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, Alpha-glucosidase (Alpha-glucosidase SusB), CALCIUM ION | | 著者 | Yao, M, Tanaka, I, Kitamura, M. | | 登録日 | 2008-07-31 | | 公開日 | 2008-10-28 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | | 主引用文献 | Structural and functional analysis of a glycoside hydrolase family 97 enzyme from Bacteroides thetaiotaomicron.
J.Biol.Chem., 283, 2008
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1V7L
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1VGJ
 | | Crystal structure of 2'-5' RNA ligase from Pyrococcus horikoshii | | 分子名称: | Hypothetical protein PH0099 | | 著者 | Yao, M, Morita, H, Okada, A, Tanaka, I. | | 登録日 | 2004-04-27 | | 公開日 | 2005-06-07 | | 最終更新日 | 2023-11-15 | | 実験手法 | X-RAY DIFFRACTION (1.94 Å) | | 主引用文献 | The structure of Pyrococcus horikoshii 2'-5' RNA ligase at 1.94 A resolution reveals a possible open form with a wider active-site cleft
ACTA CRYSTALLOGR.,SECT.F, 62, 2006
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4WLC
 | | Structure of dextran glucosidase with glucose | | 分子名称: | CALCIUM ION, GLYCEROL, Glucan 1,6-alpha-glucosidase, ... | | 著者 | Kobayashi, M, Kato, K, Yao, M. | | 登録日 | 2014-10-07 | | 公開日 | 2015-08-26 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (2.402 Å) | | 主引用文献 | Structural insights into the catalytic reaction that is involved in the reorientation of Trp238 at the substrate-binding site in GH13 dextran glucosidase
Febs Lett., 589, 2015
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4V60
 | | The structure of rat liver vault at 3.5 angstrom resolution | | 分子名称: | Major vault protein | | 著者 | Kato, K, Zhou, Y, Tanaka, H, Yao, M, Yamashita, E, Yoshimura, M, Tsukihara, T. | | 登録日 | 2008-10-24 | | 公開日 | 2014-07-09 | | 最終更新日 | 2024-04-03 | | 実験手法 | X-RAY DIFFRACTION (3.5 Å) | | 主引用文献 | The structure of rat liver vault at 3.5 angstrom resolution
Science, 323, 2009
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4WJ3
 | | Crystal structure of the asparagine transamidosome from Pseudomonas aeruginosa | | 分子名称: | 76mer-tRNA, Aspartate--tRNA(Asp/Asn) ligase, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, ... | | 著者 | Suzuki, T, Nakamura, A, Kato, K, Tanaka, I, Yao, M. | | 登録日 | 2014-09-29 | | 公開日 | 2014-12-31 | | 最終更新日 | 2020-02-05 | | 実験手法 | X-RAY DIFFRACTION (3.705 Å) | | 主引用文献 | Structure of the Pseudomonas aeruginosa transamidosome reveals unique aspects of bacterial tRNA-dependent asparagine biosynthesis
Proc.Natl.Acad.Sci.USA, 112, 2015
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1EL1
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1GD6
 | | STRUCTURE OF THE BOMBYX MORI LYSOZYME | | 分子名称: | LYSOZYME | | 著者 | Matsuura, A, Aizawa, T, Yao, M, Kawano, K, Tanaka, I, Nitta, K. | | 登録日 | 2000-09-19 | | 公開日 | 2001-03-21 | | 最終更新日 | 2023-12-27 | | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | | 主引用文献 | Structural analysis of an insect lysozyme exhibiting catalytic efficiency at low temperatures.
Biochemistry, 41, 2002
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1J1G
 | | Crystal structure of the RNase MC1 mutant N71S in complex with 5'-GMP | | 分子名称: | GUANOSINE-5'-MONOPHOSPHATE, Ribonuclease MC1 | | 著者 | Numata, T, Suzuki, A, Kakuta, Y, Kimura, K, Yao, M, Tanaka, I, Yoshida, Y, Ueda, T, Kimura, M. | | 登録日 | 2002-12-04 | | 公開日 | 2003-05-20 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | | 主引用文献 | Crystal Structures of the Ribonuclease MC1 Mutants N71T and N71S in Complex with 5'-GMP: Structural Basis for Alterations in Substrate Specificity
Biochemistry, 42, 2003
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1J1F
 | | Crystal structure of the RNase MC1 mutant N71T in complex with 5'-GMP | | 分子名称: | GUANOSINE-5'-MONOPHOSPHATE, RIBONUCLEASE MC1 | | 著者 | Numata, T, Suzuki, A, Kakuta, Y, Kimura, K, Yao, M, Tanaka, I, Yoshida, Y, Ueda, T, Kimura, M. | | 登録日 | 2002-12-03 | | 公開日 | 2003-05-20 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | | 主引用文献 | Crystal Structures of the Ribonuclease MC1 Mutants N71T and N71S in Complex with 5'-GMP: Structural Basis for Alterations in Substrate Specificity
Biochemistry, 42, 2003
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4XB3
 | | Structure of dextran glucosidase | | 分子名称: | CALCIUM ION, Glucan 1,6-alpha-glucosidase, HEXAETHYLENE GLYCOL | | 著者 | Kobayashi, M, Kato, K, Yao, M. | | 登録日 | 2014-12-16 | | 公開日 | 2015-08-26 | | 最終更新日 | 2024-03-20 | | 実験手法 | X-RAY DIFFRACTION (2.093 Å) | | 主引用文献 | Structural insights into the catalytic reaction that is involved in the reorientation of Trp238 at the substrate-binding site in GH13 dextran glucosidase
Febs Lett., 589, 2015
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4Y7E
 | | Crystal structure of beta-mannanase from Streptomyces thermolilacinus with mannohexaose | | 分子名称: | CALCIUM ION, Endoglucanase, GLYCEROL, ... | | 著者 | Kumagai, Y, Yamashita, K, Okuyama, M, Hatanaka, T, Yao, M, Kimura, A. | | 登録日 | 2015-02-14 | | 公開日 | 2015-09-23 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | | 主引用文献 | The loop structure of Actinomycete glycoside hydrolase family 5 mannanases governs substrate recognition
Febs J., 282, 2015
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1QQY
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4DWQ
 | | RNA ligase RtcB-GMP/Mn(2+) complex | | 分子名称: | GLYCEROL, GUANOSINE-5'-MONOPHOSPHATE, MALONATE ION, ... | | 著者 | Okada, C, Xia, S, Englert, M, Yao, M, Soll, D, Wang, J. | | 登録日 | 2012-02-26 | | 公開日 | 2012-09-05 | | 最終更新日 | 2017-08-02 | | 実験手法 | X-RAY DIFFRACTION (2.25 Å) | | 主引用文献 | Structural and mechanistic insights into guanylylation of RNA-splicing ligase RtcB joining RNA between 3'-terminal phosphate and 5'-OH.
Proc.Natl.Acad.Sci.USA, 109, 2012
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5GHA
 | | Sulfur Transferase TtuA in complex with Sulfur Carrier TtuB | | 分子名称: | 1,2-ETHANEDIOL, SULFATE ION, Sulfur Carrier TtuB, ... | | 著者 | Chen, M, Narai, S, Tanaka, Y, Yao, M. | | 登録日 | 2016-06-19 | | 公開日 | 2017-05-03 | | 最終更新日 | 2024-03-20 | | 実験手法 | X-RAY DIFFRACTION (2.502 Å) | | 主引用文献 | Biochemical and structural characterization of oxygen-sensitive 2-thiouridine synthesis catalyzed by an iron-sulfur protein TtuA
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
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1J0D
 | | ACC deaminase mutant complexed with ACC | | 分子名称: | 1-aminocyclopropane-1-carboxylate deaminase, N-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-Y-LMETHYL]-1-AMINO-CYCLOPROPANECARBOXYLIC ACID | | 著者 | Ose, T, Fujino, A, Yao, M, Honma, M, Tanaka, I. | | 登録日 | 2002-11-12 | | 公開日 | 2003-05-12 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | | 主引用文献 | Reaction intermediate structures of 1-aminocyclopropane-1-carboxylate deaminase: insight into PLP-dependent cyclopropane ring-opening reaction
J.BIOL.CHEM., 278, 2003
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1J0E
 | | ACC deaminase mutant reacton intermediate | | 分子名称: | 1-AMINOCYCLOPROPANECARBOXYLIC ACID, 1-aminocyclopropane-1-carboxylate deaminase, PYRIDOXAL-5'-PHOSPHATE | | 著者 | Ose, T, Fujino, A, Yao, M, Honma, M, Tanaka, I. | | 登録日 | 2002-11-12 | | 公開日 | 2003-05-12 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2.45 Å) | | 主引用文献 | Reaction intermediate structures of 1-aminocyclopropane-1-carboxylate deaminase: insight into PLP-dependent cyclopropane ring-opening reaction
J.BIOL.CHEM., 278, 2003
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1J1W
 | | Crystal Structure Of The Monomeric Isocitrate Dehydrogenase In Complex With NADP+ | | 分子名称: | Isocitrate Dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | | 著者 | Yasutake, Y, Watanabe, S, Yao, M, Takada, Y, Fukunaga, N, Tanaka, I. | | 登録日 | 2002-12-19 | | 公開日 | 2003-09-23 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (3.2 Å) | | 主引用文献 | Crystal Structure of the Monomeric Isocitrate Dehydrogenase in the Presence of NADP+
J.Biol.Chem., 278, 2003
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2ZM5
 | | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) | | 分子名称: | MAGNESIUM ION, tRNA delta(2)-isopentenylpyrophosphate transferase, tRNA(Phe) | | 著者 | Sakai, J, Yao, M, Chimnaronk, S, Tanaka, I. | | 登録日 | 2008-04-11 | | 公開日 | 2009-04-14 | | 最終更新日 | 2011-07-13 | | 実験手法 | X-RAY DIFFRACTION (2.55 Å) | | 主引用文献 | Snapshots of dynamics in synthesizing N(6)-isopentenyladenosine at the tRNA anticodon
Biochemistry, 48, 2009
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2ZXU
 | | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP | | 分子名称: | DIMETHYLALLYL S-THIOLODIPHOSPHATE, MAGNESIUM ION, tRNA delta(2)-isopentenylpyrophosphate transferase, ... | | 著者 | Sakai, J, Yao, M, Chimnaronk, S, Tanaka, I. | | 登録日 | 2009-01-07 | | 公開日 | 2009-05-26 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.75 Å) | | 主引用文献 | Snapshots of dynamics in synthesizing N(6)-isopentenyladenosine at the tRNA anticodon
Biochemistry, 48, 2009
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2ZOY
 | | The multi-drug binding transcriptional repressor CgmR (CGL2612 protein) from C.glutamicum | | 分子名称: | GLYCEROL, Transcriptional regulator | | 著者 | Itou, H, Yao, M, Watanabe, N, Tanaka, I. | | 登録日 | 2008-06-20 | | 公開日 | 2008-07-08 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | | 主引用文献 | The CGL2612 protein from Corynebacterium glutamicum is a drug resistance-related transcriptional repressor: structural and functional analysis of a newly identified transcription factor from genomic DNA analysis
J.Biol.Chem., 280, 2005
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2Z41
 | | Crystal Structure Analysis of the Ski2-type RNA helicase | | 分子名称: | MAGNESIUM ION, putative ski2-type helicase | | 著者 | Nakashima, T, Zhang, X, Kakuta, Y, Yao, M, Tanaka, I, Kimura, M. | | 登録日 | 2007-06-12 | | 公開日 | 2008-04-08 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (3.51 Å) | | 主引用文献 | Crystal structure of an archaeal Ski2p-like protein from Pyrococcus horikoshii OT3
Protein Sci., 17, 2008
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