1RL2
 
 | |
1UCG
 | | Crystal structure of Ribonuclease MC1 N71T mutant | | 分子名称: | MANGANESE (II) ION, Ribonuclease MC | | 著者 | Suzuki, A, Numata, T, Yao, M, Tanaka, I, Kimura, M. | | 登録日 | 2003-04-14 | | 公開日 | 2003-04-29 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | | 主引用文献 | Crystal structures of the ribonuclease MC1 mutants N71T and N71S in complex with 5'-GMP: structural basis for alterations in substrate specificity
Biochemistry, 42, 2003
|
|
2ZKL
 | | Crystal Structure of capsular polysaccharide assembling protein CapF from staphylococcus aureus | | 分子名称: | Capsular polysaccharide synthesis enzyme Cap5F, GLYCEROL, ZINC ION | | 著者 | Miyafusa, T, Tanaka, Y, Yao, M, Tanaka, I, Tsumoto, K. | | 登録日 | 2008-03-25 | | 公開日 | 2009-03-31 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (2.61 Å) | | 主引用文献 | Crystal structure of capsular polysaccharide assembling protein from Staphylococcus aureus
to be published
|
|
7FCW
 | | X-ray structure of H2O-solvent lysozyme | | 分子名称: | CHLORIDE ION, Lysozyme C, NICKEL (II) ION | | 著者 | Chatake, T, Tanaka, I, Kusaka, K, Fujiwara, S. | | 登録日 | 2021-07-15 | | 公開日 | 2022-04-06 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (1.43 Å) | | 主引用文献 | Protonation states of hen egg-white lysozyme observed using D/H contrast neutron crystallography.
Acta Crystallogr D Struct Biol, 78, 2022
|
|
7FCU
 | | X-ray structure of D2O-solvent lysozyme | | 分子名称: | CHLORIDE ION, Lysozyme C, NICKEL (II) ION | | 著者 | Chatake, T, Tanaka, I, Kusaka, K, Fujiwara, S. | | 登録日 | 2021-07-15 | | 公開日 | 2022-04-13 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (1.42 Å) | | 主引用文献 | Protonation states of hen egg-white lysozyme observed using D/H contrast neutron crystallography.
Acta Crystallogr D Struct Biol, 78, 2022
|
|
2DG8
 | | Crystal structure of the putative trasncriptional regulator SCO7518 from Streptomyces coelicolor A3(2) | | 分子名称: | putative tetR-family transcriptional regulatory protein | | 著者 | Hayashi, T, Watanabe, N, Sakai, N, Tamura, T, Yao, M, Tanaka, I. | | 登録日 | 2006-03-08 | | 公開日 | 2007-03-13 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (2.21 Å) | | 主引用文献 | Crystal structure of the putative transcriptional regulator SCO7518 from Streptomyces coelicolor A3(2)
To be Published
|
|
2DI3
 | |
3W9Z
 | | Crystal structure of DusC | | 分子名称: | FLAVIN MONONUCLEOTIDE, tRNA-dihydrouridine synthase C | | 著者 | Chen, M, Yu, J, Tanaka, Y, Tanaka, I, Yao, M. | | 登録日 | 2013-04-19 | | 公開日 | 2013-07-31 | | 最終更新日 | 2024-03-20 | | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | | 主引用文献 | Structure of dihydrouridine synthase C (DusC) from Escherichia coli
Acta Crystallogr.,Sect.F, 69, 2013
|
|
3ANZ
 | | Crystal Structure of alpha-hemolysin | | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, ACETIC ACID, Alpha-hemolysin | | 著者 | Yamashita, K, Kawauchi, H, Tanaka, Y, Yao, M, Tanaka, I. | | 登録日 | 2010-09-16 | | 公開日 | 2011-06-22 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.303 Å) | | 主引用文献 | 2-Methyl-2,4-pentanediol induces spontaneous assembly of staphylococcal alpha-hemolysin into heptameric pore structure
Protein Sci., 20, 2011
|
|
3B0V
 | | tRNA-dihydrouridine synthase from Thermus thermophilus in complex with tRNA | | 分子名称: | FLAVIN MONONUCLEOTIDE, tRNA, tRNA-dihydrouridine synthase | | 著者 | Yu, F, Tanaka, Y, Yamashita, K, Nakamura, A, Yao, M, Tanaka, I. | | 登録日 | 2011-06-14 | | 公開日 | 2011-12-14 | | 最終更新日 | 2017-10-11 | | 実験手法 | X-RAY DIFFRACTION (3.51 Å) | | 主引用文献 | Molecular basis of dihydrouridine formation on tRNA
Proc.Natl.Acad.Sci.USA, 108, 2011
|
|
3B0U
 | | tRNA-dihydrouridine synthase from Thermus thermophilus in complex with tRNA fragment | | 分子名称: | FLAVIN MONONUCLEOTIDE, RNA (5'-R(*GP*GP*(H2U)P*A)-3'), tRNA-dihydrouridine synthase | | 著者 | Yu, F, Tanaka, Y, Yamashita, K, Nakamura, A, Yao, M, Tanaka, I. | | 登録日 | 2011-06-14 | | 公開日 | 2011-12-14 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.948 Å) | | 主引用文献 | Molecular basis of dihydrouridine formation on tRNA
Proc.Natl.Acad.Sci.USA, 108, 2011
|
|
3B07
 | | Crystal structure of octameric pore form of gamma-hemolysin from Staphylococcus aureus | | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, Gamma-hemolysin component A, Gamma-hemolysin component B | | 著者 | Yamashita, K, Kawai, Y, Tanaka, Y, Yao, M, Tanaka, I. | | 登録日 | 2011-06-06 | | 公開日 | 2011-10-12 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.495 Å) | | 主引用文献 | Crystal structure of the octameric pore of
staphylococcal gamma-hemolysin reveals the beta-barrel
pore formation mechanism by two components
Proc.Natl.Acad.Sci.USA, 108, 2011
|
|
3B0P
 | | tRNA-dihydrouridine synthase from Thermus thermophilus | | 分子名称: | FLAVIN MONONUCLEOTIDE, tRNA-dihydrouridine synthase | | 著者 | Yu, F, Tanaka, Y, Yamashita, K, Nakamura, A, Yao, M, Tanaka, I. | | 登録日 | 2011-06-12 | | 公開日 | 2011-12-14 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | | 主引用文献 | Molecular basis of dihydrouridine formation on tRNA
Proc.Natl.Acad.Sci.USA, 108, 2011
|
|
3AZV
 | | Crystal structure of the receptor binding domain | | 分子名称: | D/C mosaic neurotoxin, SULFATE ION | | 著者 | Nuemket, N, Tanaka, Y, Tsukamoto, K, Tsuji, T, Nakamura, K, Kozaki, S, Yao, M, Tanaka, I. | | 登録日 | 2011-06-02 | | 公開日 | 2011-12-28 | | 最終更新日 | 2017-10-11 | | 実験手法 | X-RAY DIFFRACTION (3.1 Å) | | 主引用文献 | Structural and mutational analyses of the receptor binding domain of botulinum D/C mosaic neurotoxin: insight into the ganglioside binding mechanism
Biochem.Biophys.Res.Commun., 411, 2011
|
|
3AZW
 | | Crystal structure of the receptor binding domain | | 分子名称: | D/C mosaic neurotoxin, SULFATE ION | | 著者 | Nuemket, N, Tanaka, Y, Tsukamoto, K, Tsuji, T, Nakamura, K, Kozaki, S, Yao, M, Tanaka, I. | | 登録日 | 2011-06-02 | | 公開日 | 2011-12-28 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (2.99 Å) | | 主引用文献 | Structural and mutational analyses of the receptor binding domain of botulinum D/C mosaic neurotoxin: insight into the ganglioside binding mechanism
Biochem.Biophys.Res.Commun., 411, 2011
|
|
1F2D
 | | 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE | | 分子名称: | 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE, PYRIDOXAL-5'-PHOSPHATE, SULFATE ION | | 著者 | Yao, M, Ose, T, Sugimoto, H, Horiuchi, A, Nakagawa, A, Yokoi, D, Murakami, T, Honma, M, Wakatsuki, S, Tanaka, I. | | 登録日 | 2000-05-24 | | 公開日 | 2000-12-20 | | 最終更新日 | 2011-07-13 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Crystal structure of 1-aminocyclopropane-1-carboxylate deaminase from Hansenula saturnus.
J.Biol.Chem., 275, 2000
|
|
1GD6
 | | STRUCTURE OF THE BOMBYX MORI LYSOZYME | | 分子名称: | LYSOZYME | | 著者 | Matsuura, A, Aizawa, T, Yao, M, Kawano, K, Tanaka, I, Nitta, K. | | 登録日 | 2000-09-19 | | 公開日 | 2001-03-21 | | 最終更新日 | 2023-12-27 | | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | | 主引用文献 | Structural analysis of an insect lysozyme exhibiting catalytic efficiency at low temperatures.
Biochemistry, 41, 2002
|
|
1HUU
 | |
1IQ4
 | | 5S-RRNA BINDING RIBOSOMAL PROTEIN L5 FROM BACILLUS STEAROTHERMOPHILUS | | 分子名称: | 50S RIBOSOMAL PROTEIN L5 | | 著者 | Nakashima, T, Yao, M, Kawamura, S, Iwasaki, K, Kimura, M, Tanaka, I. | | 登録日 | 2001-06-13 | | 公開日 | 2001-06-27 | | 最終更新日 | 2023-12-27 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | Ribosomal protein L5 has a highly twisted concave surface and flexible arms responsible for rRNA binding.
RNA, 7, 2001
|
|
1J0C
 | | ACC deaminase mutated to catalytic residue | | 分子名称: | 1-aminocyclopropane-1-carboxylate deaminase, PYRIDOXAL-5'-PHOSPHATE | | 著者 | Ose, T, Fujino, A, Yao, M, Honma, M, Tanaka, I. | | 登録日 | 2002-11-12 | | 公開日 | 2003-05-12 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2.75 Å) | | 主引用文献 | Reaction intermediate structures of 1-aminocyclopropane-1-carboxylate deaminase: insight into PLP-dependent cyclopropane ring-opening reaction
J.BIOL.CHEM., 278, 2003
|
|
1J31
 | | Crystal Structure of Hypothetical Protein PH0642 from Pyrococcus horikoshii | | 分子名称: | ACETATE ION, Hypothetical protein PH0642 | | 著者 | Sakai, N, Tajika, Y, Yao, M, Watanabe, N, Tanaka, I. | | 登録日 | 2003-01-16 | | 公開日 | 2004-03-09 | | 最終更新日 | 2023-12-27 | | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | | 主引用文献 | Crystal structure of hypothetical protein PH0642 from Pyrococcus horikoshii at 1.6A resolution.
Proteins, 57, 2004
|
|
1J0B
 | | Crystal Structure Analysis of the ACC deaminase homologue complexed with inhibitor | | 分子名称: | 1-aminocyclopropane-1-carboxylate deaminase, N-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-Y-LMETHYL]-1-AMINO-CYCLOPROPANECARBOXYLIC ACID | | 著者 | Fujino, A, Ose, T, Honma, M, Yao, M, Tanaka, I. | | 登録日 | 2002-11-12 | | 公開日 | 2003-05-12 | | 最終更新日 | 2023-12-27 | | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | | 主引用文献 | Structural and enzymatic properties of 1-aminocyclopropane-1-carboxylate deaminase homologue from Pyrococcus horikoshii
J.Mol.Biol., 341, 2004
|
|
1IZC
 | | Crystal Structure Analysis of Macrophomate synthase | | 分子名称: | MAGNESIUM ION, PYRUVIC ACID, macrophomate synthase intermolecular Diels-Alderase | | 著者 | Ose, T, Watanabe, K, Mie, T, Honma, M, Watanabe, H, Yao, M, Oikawa, H, Tanaka, I. | | 登録日 | 2002-10-01 | | 公開日 | 2003-04-01 | | 最終更新日 | 2023-11-15 | | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | | 主引用文献 | Insight into a natural Diels-Alder reaction from the structure of macrophomate synthase.
Nature, 422, 2003
|
|
1IZ6
 | | Crystal Structure of Translation Initiation Factor 5A from Pyrococcus Horikoshii | | 分子名称: | Initiation Factor 5A | | 著者 | Yao, M, Ohsawa, A, Kikukawa, S, Tanaka, I, Kimura, M. | | 登録日 | 2002-09-25 | | 公開日 | 2003-01-28 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Crystal Structure of Hyperthermophilic Archaeal Initiation Factor 5A: A Homologue of Eukaryotic Initiation Factor 5A (eIF-5A)
J.BIOCHEM.(TOKYO), 133, 2003
|
|
1J0A
 | | Crystal Structure Analysis of the ACC deaminase homologue | | 分子名称: | 1-aminocyclopropane-1-carboxylate deaminase, ISOPROPYL ALCOHOL, PYRIDOXAL-5'-PHOSPHATE, ... | | 著者 | Fujino, A, Ose, T, Honma, M, Yao, M, Tanaka, I. | | 登録日 | 2002-11-12 | | 公開日 | 2003-05-12 | | 最終更新日 | 2023-12-27 | | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | | 主引用文献 | Structural and enzymatic properties of 1-aminocyclopropane-1-carboxylate deaminase homologue from Pyrococcus horikoshii
J.Mol.Biol., 341, 2004
|
|
