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1H2A
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SINGLE CRYSTALS OF HYDROGENASE FROM DESULFOVIBRIO VULGARIS
分子名称: FE3-S4 CLUSTER, HYDROGENASE, IRON/SULFUR CLUSTER, ...
著者Higuchi, Y, Yasuoka, N.
登録日1997-10-17
公開日1999-02-09
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Unusual ligand structure in Ni-Fe active center and an additional Mg site in hydrogenase revealed by high resolution X-ray structure analysis.
Structure, 5, 1997
1H2R
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BU of 1h2r by Molmil
THREE-DIMENSIONAL STRUCTURE OF NI-FE HYDROGENASE FROM DESULFIVIBRIO VULGARIS MIYAZAKI F IN THE REDUCED FORM AT 1.4 A RESOLUTION
分子名称: FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, MAGNESIUM ION, ...
著者Higuchi, Y, Ogata, H.
登録日1999-06-14
公開日2000-01-05
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Removal of the bridging ligand atom at the Ni-Fe active site of [NiFe] hydrogenase upon reduction with H2, as revealed by X-ray structure analysis at 1.4 A resolution.
Structure Fold.Des., 7, 1999
2CDV
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BU of 2cdv by Molmil
REFINED STRUCTURE OF CYTOCHROME C3 AT 1.8 ANGSTROMS RESOLUTION
分子名称: CYTOCHROME C3, HEME C
著者Higuchi, Y, Kusunoki, M, Matsuura, Y, Yasuoka, N, Kakudo, M.
登録日1983-11-15
公開日1984-02-02
最終更新日2021-03-03
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Refined structure of cytochrome c3 at 1.8 A resolution
J.Mol.Biol., 172, 1984
2EWU
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BU of 2ewu by Molmil
The F20H mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F
分子名称: Cytochrome c3, PROTOPORPHYRIN IX CONTAINING FE
著者Higuchi, Y, Komori, H, Morita, K.
登録日2005-11-07
公開日2006-11-28
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献The F20H mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F
To be Published
2EWI
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BU of 2ewi by Molmil
The F20Y mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F
分子名称: Cytochrome c3, PROTOPORPHYRIN IX CONTAINING FE
著者Higuchi, Y, Komori, H, Morita, K.
登録日2005-11-03
公開日2006-11-28
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献The F20Y mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris
To be Published
1VEK
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BU of 1vek by Molmil
Solution Structure of RSGI RUH-011, a UBA Domain from Arabidopsis cDNA
分子名称: ubiquitin-specific protease 14, putative
著者Higuchi, Y, Abe, T, Hirota, H, Saito, K, Koshiba, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-03-31
公開日2004-09-30
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution Structure of RSGI RUH-011, a UBA Domain from Arabidopsis cDNA
To be Published
1VEJ
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BU of 1vej by Molmil
Solution Structure of RSGI RUH-016, a UBA Domain from mouse cDNA
分子名称: RIKEN cDNA 4931431F19
著者Higuchi, Y, Abe, T, Hirota, H, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-03-31
公開日2005-05-31
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution Structure of RSGI RUH-016, a UBA Domain from mouse cDNA
To be Published
1WIV
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BU of 1wiv by Molmil
solution structure of RSGI RUH-023, a UBA domain from Arabidopsis cDNA
分子名称: ubiquitin-specific protease 14
著者Higuchi, Y, Abe, T, Hirota, H, Izumi, K, Yoshida, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-28
公開日2004-11-28
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献solution structure of RSGI RUH-023, a UBA domain from Arabidopsis cDNA
To be Published
2RDV
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BU of 2rdv by Molmil
RUBREDOXIN FROM DESULFOVIBRIO VULGARIS MIYAZAKI F, MONOCLINIC CRYSTAL FORM
分子名称: FE (III) ION, RUBREDOXIN
著者Higuchi, Y, Yasuoka, N.
登録日1998-10-07
公開日1999-05-18
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure determination of rubredoxin from Desulfovibrio vulgaris Miyazaki F in two crystal forms.
Acta Crystallogr.,Sect.D, 55, 1999
1RDV
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RUBREDOXIN FROM DESULFOVIBRIO VULGARIS MIYAZAKI F, TRIGONAL CRYSTAL FORM
分子名称: FE (III) ION, RUBREDOXIN
著者Higuchi, Y, Yasuoka, N.
登録日1998-09-30
公開日1999-05-18
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure determination of rubredoxin from Desulfovibrio vulgaris Miyazaki F in two crystal forms.
Acta Crystallogr.,Sect.D, 55, 1999
2FFN
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BU of 2ffn by Molmil
The E41Q mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F
分子名称: Cytochrome c3, PROTOPORPHYRIN IX CONTAINING FE
著者Higuchi, Y, Komori, H, Morita, K.
登録日2005-12-20
公開日2006-12-05
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Roles of charged residues in pH-dependent redox properties of cytochrome c3 from Desulfovibrio vulgaris Miyazaki F
BIOPHYSICS(BSJ), 2, 2006
2EWK
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BU of 2ewk by Molmil
The T24V mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F
分子名称: Cytochrome c3, PROTOPORPHYRIN IX CONTAINING FE
著者Higuchi, Y, Komori, H, Morita, K.
登録日2005-11-03
公開日2006-11-28
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Strategic roles of axial histidines in structure formation and redox regulation of tetraheme cytochrome c3.
Biochemistry, 47, 2008
2FMY
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BU of 2fmy by Molmil
CO-dependent transcription factor CooA from Carboxydothermus hydrogenoformans (Imidazole-bound form)
分子名称: IMIDAZOLE, PROTOPORPHYRIN IX CONTAINING FE, carbon monoxide oxidation system transcription regulator CooA-1
著者Higuchi, Y, Komori, H.
登録日2006-01-10
公開日2007-01-16
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal Structure of CO-sensing Transcription Activator CooA Bound to Exogenous Ligand Imidazole
J.Mol.Biol., 367, 2007
5AX7
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BU of 5ax7 by Molmil
yeast pyruvyltransferase Pvg1p
分子名称: Pyruvyl transferase 1, ZINC ION
著者Kanekiyo, M, Yoritsune, K, Yoshinaga, S, Higuchi, Y, Takegawa, K, Kakuta, Y.
登録日2015-07-16
公開日2016-06-08
最終更新日2020-02-26
実験手法X-RAY DIFFRACTION (2.46 Å)
主引用文献A rationally engineered yeast pyruvyltransferase Pvg1p introduces sialylation-like properties in neo-human-type complex oligosaccharide
Sci Rep, 6, 2016
2YXV
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BU of 2yxv by Molmil
The deletion mutant of Multicopper Oxidase CueO
分子名称: Blue copper oxidase cueO, COPPER (II) ION, CU-O-CU LINKAGE, ...
著者Higuchi, Y, Komori, H.
登録日2007-04-27
公開日2008-01-01
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Structure and function of the engineered multicopper oxidase CueO from Escherichia coli--deletion of the methionine-rich helical region covering the substrate-binding site
J.Mol.Biol., 373, 2007
2YXW
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BU of 2yxw by Molmil
The deletion mutant of Multicopper Oxidase CueO
分子名称: Blue copper oxidase cueO, COPPER (II) ION, CU-O-CU LINKAGE, ...
著者Higuchi, Y, Komori, H.
登録日2007-04-27
公開日2008-01-01
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structure and function of the engineered multicopper oxidase CueO from Escherichia coli--deletion of the methionine-rich helical region covering the substrate-binding site
J.Mol.Biol., 373, 2007
2YXC
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BU of 2yxc by Molmil
The H25M mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F
分子名称: Cytochrome c3, PROTOPORPHYRIN IX CONTAINING FE
著者Higuchi, Y, Komori, H.
登録日2007-04-26
公開日2008-04-29
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Strategic roles of axial histidines in structure formation and redox regulation of tetraheme cytochrome c3.
Biochemistry, 47, 2008
2YYW
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BU of 2yyw by Molmil
The F20M mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F
分子名称: Cytochrome c3, PROTOPORPHYRIN IX CONTAINING FE
著者Higuchi, Y, Komori, H.
登録日2007-05-02
公開日2008-05-06
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.33 Å)
主引用文献Structures of Noncoordinated Aromatic Residue Mutants in Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F
To be Published
2YYX
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BU of 2yyx by Molmil
The Y65A mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F
分子名称: Cytochrome c3, PROTOPORPHYRIN IX CONTAINING FE
著者Higuchi, Y, Komori, H.
登録日2007-05-02
公開日2008-05-06
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Structures of Noncoordinated Aromatic Residue Mutants in Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F
To be Published
2Z47
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BU of 2z47 by Molmil
The Y66L mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F
分子名称: Cytochrome c3, HEME C
著者Higuchi, Y, Komori, H.
登録日2007-06-13
公開日2008-06-17
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structures of Noncoordinated Aromatic Residue Mutants in Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F
To be Published
5YHS
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BU of 5yhs by Molmil
Pyruvylated beta-D-galactosidase from Bacillus sp. HMA207, apo form
分子名称: Pyruvylated beta-D-galactosidase
著者Tanuma, M, Yamada, C, Arakawa, T, Higuchi, Y, Takegawa, K, Fushinobu, S.
登録日2017-09-29
公開日2018-08-29
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Identification and characterization of a novel beta-D-galactosidase that releases pyruvylated galactose.
Sci Rep, 8, 2018
5YIF
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Pyruvylated beta-D-galactosidase from Bacillus sp. HMA207, E163A mutant pyruvylated beta-D-galactose complex
分子名称: (2R,4aR,6R,7R,8R,8aR)-2-methyl-6,7,8-tris(oxidanyl)-4,4a,6,7,8,8a-hexahydropyrano[3,2-d][1,3]dioxine-2-carboxylic acid, Pyruvylated beta-D-galactosidase
著者Tanuma, M, Yamada, C, Arakawa, T, Higuchi, Y, Takegawa, K, Fushinobu, S.
登録日2017-10-04
公開日2018-08-29
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Identification and characterization of a novel beta-D-galactosidase that releases pyruvylated galactose.
Sci Rep, 8, 2018
1A7V
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CYTOCHROME C' FROM RHODOPSEUDOMONAS PALUSTRIS
分子名称: CYTOCHROME C', PROTOPORPHYRIN IX CONTAINING FE
著者Shibata, N, Iba, S, Misaki, S, Meyer, T.E, Bartsch, R.G, Cusanovich, M.A, Higuchi, Y, Yasuoka, N.
登録日1998-03-18
公開日1998-06-17
最終更新日2023-08-02
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Basis for monomer stabilization in Rhodopseudomonas palustris cytochrome c' derived from the crystal structure.
J.Mol.Biol., 284, 1998
3KLJ
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BU of 3klj by Molmil
Crystal structure of NADH:rubredoxin oxidoreductase from Clostridium acetobutylicum
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, NAD(FAD)-dependent dehydrogenase, NirB-family (N-terminal domain)
著者Nishikawa, K, Shomura, Y, Kawasaki, S, Niimura, Y, Higuchi, Y.
登録日2009-11-08
公開日2010-02-16
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of NADH:rubredoxin oxidoreductase from Clostridium acetobutylicum: a key component of the dioxygen scavenging system in obligatory anaerobes.
Proteins, 78, 2010
1C53
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S-CLASS CYTOCHROMES C HAVE A VARIETY OF FOLDING PATTERNS: STRUCTURE OF CYTOCHROME C-553 FROM DESULFOVIBRIO VULGARIS DETERMINED BY THE MULTI-WAVELENGTH ANOMALOUS DISPERSION METHOD
分子名称: CYTOCHROME C553, PROTOPORPHYRIN IX CONTAINING FE
著者Nakagawa, A, Higuchi, Y, Yasuoka, N, Katsube, Y, Yaga, T.
登録日1991-08-26
公開日1993-10-31
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献S-class cytochromes c have a variety of folding patterns: structure of cytochrome c-553 from Desulfovibrio vulgaris determined by the multi-wavelength anomalous dispersion method.
J.Biochem.(Tokyo), 108, 1990

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