2EHG
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![BU of 2ehg by Molmil](/molmil-images/mine/2ehg) | |
4E19
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4NYN
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4JP8
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![BU of 4jp8 by Molmil](/molmil-images/mine/4jp8) | Crystal structure of Pro-F17H/S324A | Descriptor: | CALCIUM ION, Tk-subtilisin | Authors: | Yuzaki, K, You, D.J, Uehara, R, Koga, Y, Kanaya, S. | Deposit date: | 2013-03-19 | Release date: | 2014-01-29 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.21 Å) | Cite: | Increase in activation rate of Pro-Tk-subtilisin by a single nonpolar-to-polar amino acid substitution at the hydrophobic core of the propeptide domain Protein Sci., 22, 2013
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4MAD
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![BU of 4mad by Molmil](/molmil-images/mine/4mad) | Crystal structure of beta-galactosidase C (BgaC) from Bacillus circulans ATCC 31382 | Descriptor: | 2-(2-METHOXYETHOXY)ETHANOL, Beta-galactosidase | Authors: | Kamerke, C, You, D.J, Kanaya, S, Elling, L. | Deposit date: | 2013-08-16 | Release date: | 2014-08-27 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Rational design of a glycosynthase by the crystal structure of beta-galactosidase from Bacillus circulans (BgaC) and its use for the synthesis of N-acetyllactosamine type 1 glycan structures. J.Biotechnol., 191, 2014
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3VV2
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![BU of 3vv2 by Molmil](/molmil-images/mine/3vv2) | Crystal structure of complex form between S324A-subtilisin and mutant Tkpro | Descriptor: | CALCIUM ION, CHLORIDE ION, PROPEPTIDE from Tk-subtilisin, ... | Authors: | Uehara, R, Ueda, Y, You, D.J, Takano, K, Koga, Y, Kanaya, S. | Deposit date: | 2012-07-12 | Release date: | 2013-03-06 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.83 Å) | Cite: | Accelerated maturation of Tk-subtilisin by a Leu Pro mutation at the C-terminus of the propeptide, which reduces the binding of the propeptide to Tk-subtilisin Febs J., 280, 2013
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3VN5
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![BU of 3vn5 by Molmil](/molmil-images/mine/3vn5) | Crystal structure of Aquifex aeolicus RNase H3 | Descriptor: | Ribonuclease HIII | Authors: | Jongruja, N, You, D.J, Eiko, K, Angkawidjaja, C, Koga, Y, Takano, K, Kanaya, S. | Deposit date: | 2011-12-22 | Release date: | 2012-12-26 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.98 Å) | Cite: | Structure and characterization of RNase H3 from Aquifex aeolicus Febs J., 279, 2012
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2E4L
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![BU of 2e4l by Molmil](/molmil-images/mine/2e4l) | Thermodynamic and Structural Analysis of Thermolabile RNase HI from Shewanella oneidensis MR-1 | Descriptor: | Ribonuclease HI | Authors: | Tadokoro, T, You, D.J, Chon, H, Matsumura, H, Koga, Y, Takano, K, Kanaya, S. | Deposit date: | 2006-12-13 | Release date: | 2007-05-01 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structural, thermodynamic, and mutational analyses of a psychrotrophic RNase HI. Biochemistry, 46, 2007
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4EB0
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![BU of 4eb0 by Molmil](/molmil-images/mine/4eb0) | Crystal structure of Leaf-branch compost bacterial cutinase homolog | Descriptor: | LCC, THIOCYANATE ION | Authors: | Sulaiman, S, You, D.J, Eiko, K, Koga, Y, Kanaya, S. | Deposit date: | 2012-03-23 | Release date: | 2013-03-27 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Crystal structure of Leaf-branch compost bacterial cutinase homolog To be Published
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4H8K
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![BU of 4h8k by Molmil](/molmil-images/mine/4h8k) | Crystal structure of LC11-RNase H1 in complex with RNA/DNA hybrid | Descriptor: | DNA (5'-D(*GP*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*CP*G)-3'), RNA (5'-R(*CP*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*CP*C)-3'), Ribonuclease H | Authors: | Nguyen, T.N, You, D.J, Matsumoto, H, Kanaya, E, Kanaya, S. | Deposit date: | 2012-09-23 | Release date: | 2013-09-25 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal structure of metagenome-derived LC11-RNase H1 in complex with RNA/DNA hybrid J.Struct.Biol., 182, 2013
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4OEC
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![BU of 4oec by Molmil](/molmil-images/mine/4oec) | Crystal structure of glycerophosphodiester phosphodiesterase from Thermococcus kodakarensis KOD1 | Descriptor: | Glycerophosphoryl diester phosphodiesterase, MAGNESIUM ION | Authors: | Atsuta, Y, You, D.J, Takano, K, Koga, Y, Kanaya, S. | Deposit date: | 2014-01-13 | Release date: | 2015-01-14 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal structure of glycerophosphodiester phosphodiesterase from Thermococcus kodakarensis KOD1 To be Published
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2Z57
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![BU of 2z57 by Molmil](/molmil-images/mine/2z57) | Crystal structure of G56E-propeptide:S324A-subtilisin complex | Descriptor: | CALCIUM ION, Tk-subtilisin, ZINC ION | Authors: | Pulido, M.A, Tanaka, S, Sringiew, C, You, D.J, Matsumura, H, Koga, Y, Takano, K, Kanaya, S. | Deposit date: | 2007-06-29 | Release date: | 2008-01-01 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Requirement of left-handed glycine residue for high stability of the Tk-subtilisin propeptide as revealed by mutational and crystallographic analyses J.Mol.Biol., 374, 2007
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2Z56
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![BU of 2z56 by Molmil](/molmil-images/mine/2z56) | Crystal structure of G56S-propeptide:S324A-subtilisin complex | Descriptor: | CALCIUM ION, Tk-subtilisin, ZINC ION | Authors: | Pulido, M.A, Tanaka, S, Sringiew, C, You, D.J, Matsumura, H, Koga, Y, Takano, K, Kanaya, S. | Deposit date: | 2007-06-29 | Release date: | 2008-01-01 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Requirement of left-handed glycine residue for high stability of the Tk-subtilisin propeptide as revealed by mutational and crystallographic analyses J.Mol.Biol., 374, 2007
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2Z8Z
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![BU of 2z8z by Molmil](/molmil-images/mine/2z8z) | Crystal structure of a platinum-bound S445C mutant of Pseudomonas sp. MIS38 lipase | Descriptor: | CALCIUM ION, Lipase, PLATINUM (II) ION, ... | Authors: | Angkawidjaja, C, You, D.J, Matsumura, H, Koga, Y, Takano, K, Kanaya, S. | Deposit date: | 2007-09-13 | Release date: | 2007-10-30 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal structure of a family I.3 lipase from Pseudomonas sp. MIS38 in a closed conformation FEBS Lett., 581, 2007
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2Z58
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![BU of 2z58 by Molmil](/molmil-images/mine/2z58) | Crystal structure of G56W-propeptide:S324A-subtilisin complex | Descriptor: | CALCIUM ION, Tk-subtilisin, ZINC ION | Authors: | Pulido, M.A, Tanaka, S, Sringiew, C, You, D.J, Matsumura, H, Koga, Y, Takano, K, Kanaya, S. | Deposit date: | 2007-06-29 | Release date: | 2008-01-01 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.88 Å) | Cite: | Requirement of left-handed glycine residue for high stability of the Tk-subtilisin propeptide as revealed by mutational and crystallographic analyses J.Mol.Biol., 374, 2007
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2Z8X
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![BU of 2z8x by Molmil](/molmil-images/mine/2z8x) | Crystal structure of extracellular lipase from Pseudomonas sp. MIS38 | Descriptor: | CALCIUM ION, Lipase, ZINC ION | Authors: | Angkawidjaja, C, You, D.J, Matsumura, H, Koga, Y, Takano, K, Kanaya, S. | Deposit date: | 2007-09-11 | Release date: | 2007-10-30 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.48 Å) | Cite: | Crystal structure of a family I.3 lipase from Pseudomonas sp. MIS38 in a closed conformation FEBS Lett., 581, 2007
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2Z1I
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![BU of 2z1i by Molmil](/molmil-images/mine/2z1i) | Crystal structure of E.coli RNase HI surface charged mutant(Q4R/T40E/Q72H/Q76K/Q80E/T92K/Q105K/Q113R/Q115K) | Descriptor: | Ribonuclease HI | Authors: | You, D.J, Fukuchi, S, Nishikawa, K, Koga, Y, Takano, K, Kanaya, S. | Deposit date: | 2007-05-08 | Release date: | 2007-11-13 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Protein Thermostabilization Requires a Fine-tuned Placement of Surface-charged Residues J.Biochem.(Tokyo), 142, 2007
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2Z1J
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![BU of 2z1j by Molmil](/molmil-images/mine/2z1j) | Crystal structure of E.coli RNase HI surface charged mutant(Q4R/T40E/Q72H/Q76K/Q80E/T92K/Q105K/Q113R/Q115K/N143K/T145K) | Descriptor: | Ribonuclease HI | Authors: | You, D.J, Fukuchi, S, Nishikawa, K, Koga, Y, Takano, K, Kanaya, S. | Deposit date: | 2007-05-08 | Release date: | 2007-11-13 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.38 Å) | Cite: | Protein Thermostabilization Requires a Fine-tuned Placement of Surface-charged Residues J.Biochem.(Tokyo), 142, 2007
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2Z1H
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![BU of 2z1h by Molmil](/molmil-images/mine/2z1h) | Crystal structure of E.coli RNase HI surface charged mutant(Q4R/T92K/Q105K/Q113R/Q115K/N143K/T145K) | Descriptor: | Ribonuclease HI | Authors: | You, D.J, Fukuchi, S, Nishikawa, K, Koga, Y, Takano, K, Kanaya, S. | Deposit date: | 2007-05-08 | Release date: | 2007-11-13 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Protein Thermostabilization Requires a Fine-tuned Placement of Surface-charged Residues J.Biochem.(Tokyo), 142, 2007
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2Z1G
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![BU of 2z1g by Molmil](/molmil-images/mine/2z1g) | Crystal structure of E.coli RNase HI surface charged mutant(Q4R/T40E/Q72H/Q76K/Q80E/T92K/Q105K) | Descriptor: | Ribonuclease HI | Authors: | You, D.J, Fukuchi, S, Nishikawa, K, Koga, Y, Takano, K, Kanaya, S. | Deposit date: | 2007-05-08 | Release date: | 2007-11-13 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Protein Thermostabilization Requires a Fine-tuned Placement of Surface-charged Residues J.Biochem.(Tokyo), 142, 2007
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4IVN
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![BU of 4ivn by Molmil](/molmil-images/mine/4ivn) | The Vibrio vulnificus NanR protein complexed with ManNAc-6P | Descriptor: | 2-acetamido-2-deoxy-6-O-phosphono-alpha-D-mannopyranose, Transcriptional regulator | Authors: | Hwang, J, Kim, M.H. | Deposit date: | 2013-01-23 | Release date: | 2013-07-17 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structural insights into the regulation of sialic acid catabolism by the Vibrio vulnificus transcriptional repressor NanR Proc.Natl.Acad.Sci.USA, 110, 2013
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