2IPB
| |
3MVD
| Crystal structure of the chromatin factor RCC1 in complex with the nucleosome core particle | Descriptor: | DNA (146-MER), Histone H2A, Histone H2B 1.1, ... | Authors: | Makde, R.D, England, J.R, Yennawar, H.P, Tan, S. | Deposit date: | 2010-05-04 | Release date: | 2010-08-25 | Last modified: | 2023-09-06 | Method: | X-RAY DIFFRACTION (2.9 Å) | Cite: | Structure of RCC1 chromatin factor bound to the nucleosome core particle. Nature, 467, 2010
|
|
1Z5U
| |
2A96
| |
2AUT
| Crystal structure of Lys154Asn mutant of mature AphA of S. typhimurium | Descriptor: | AphA, MAGNESIUM ION, PHOSPHATE ION, ... | Authors: | Makde, R.D, Gupta, G.D, Kumar, V. | Deposit date: | 2005-08-29 | Release date: | 2006-09-05 | Last modified: | 2023-08-23 | Method: | X-RAY DIFFRACTION (2.25 Å) | Cite: | Structural and mutational analyses reveal the functional role of active-site Lys-154 and Asp-173 of Salmonella typhimurium AphA protein. Arch.Biochem.Biophys., 464, 2007
|
|
2AKC
| |
1Z5G
| Crystal structure of Salmonella typhimurium AphA protein | Descriptor: | AphA protein, MAGNESIUM ION, PHOSPHATE ION | Authors: | Makde, R.D, Kumar, V. | Deposit date: | 2005-03-18 | Release date: | 2006-03-21 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structural and mutational analyses reveal the functional role of active-site Lys-154 and Asp-173 of Salmonella typhimurium AphA protein. Arch.Biochem.Biophys., 464, 2007
|
|
1Z88
| |
8WT1
| Crystal structure of S9 carboxypeptidase from Geobacillus sterothermophilus | Descriptor: | ALANINE, CITRATE ANION, GLYCEROL, ... | Authors: | Chandravanshi, K, Kumar, A, Sen, C, Singh, R, Bhange, G.B, Makde, R.D. | Deposit date: | 2023-10-17 | Release date: | 2024-03-13 | Last modified: | 2024-04-10 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structure and solution scattering of Geobacillus stearothermophilus S9 peptidase reveal structural adaptations for carboxypeptidase activity. Febs Lett., 598, 2024
|
|
7XBJ
| Txp40, an insecticidal toxin protein from Xenorhabdus nematophila | Descriptor: | 40kDa insecticidal toxin | Authors: | Kinkar, O, Kumar, A, Prashar, A, Hire, R.S, Makde, R.D. | Deposit date: | 2022-03-21 | Release date: | 2023-03-29 | Last modified: | 2023-12-20 | Method: | X-RAY DIFFRACTION (2.08 Å) | Cite: | The crystal structure of insecticidal protein Txp40 from Xenorhabdus nematophila reveals a two-domain unique binary toxin with homology to the toxin-antitoxin (TA) system. Insect Biochem.Mol.Biol., 164, 2023
|
|
7YH4
| |
8J9C
| Crystal structure of M61 peptidase (apo-form) from Xanthomonas campestris | Descriptor: | GLYCEROL, Putative glycyl aminopeptidase, SODIUM ION, ... | Authors: | Yadav, P, Kumar, A, Jamdar, S.N, Makde, R.D. | Deposit date: | 2023-05-03 | Release date: | 2024-05-01 | Last modified: | 2024-10-16 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Crystal structure of a newly identified M61 family aminopeptidase with broad substrate specificity that is solely responsible for recycling acidic amino acids. Febs J., 291, 2024
|
|
8J9D
| Crystal structure of M61 peptidase (bestatin-bound) from Xanthomonas campestris | Descriptor: | 2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, ... | Authors: | Yadav, P, Kumar, A, Kulkarni, B.S, Jamdar, S.N, Makde, R.D. | Deposit date: | 2023-05-03 | Release date: | 2024-05-01 | Last modified: | 2024-07-31 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal structure of a newly identified M61 family aminopeptidase with broad substrate specificity that is solely responsible for recycling acidic amino acids. Febs J., 291, 2024
|
|
6A4T
| Crystal structure of Peptidase E from Deinococcus radiodurans R1 | Descriptor: | Peptidase E | Authors: | Yadav, P, Goyal, V.G, Kumar, A, Gokhale, S.M, Makde, R.D. | Deposit date: | 2018-06-20 | Release date: | 2019-06-26 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Catalytic triad heterogeneity in S51 peptidase family: Structural basis for functional variability. Proteins, 87, 2019
|
|
6A9T
| Crystal structure of Icp55 from Saccharomyces cerevisiae (N-terminal 58 residues deletion) | Descriptor: | GLYCINE, Intermediate cleaving peptidase 55, MANGANESE (II) ION, ... | Authors: | Singh, R, Kumar, A, Goyal, V.D, Makde, R.D. | Deposit date: | 2018-07-16 | Release date: | 2019-01-16 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | Crystal structures and biochemical analyses of intermediate cleavage peptidase: role of dynamics in enzymatic function. FEBS Lett., 593, 2019
|
|
7CAY
| Crystal Structure of Lon N-terminal domain protein from Xanthomonas campestris | Descriptor: | ATP-dependent protease | Authors: | Singh, R, Sharma, B, Deshmukh, S, Kumar, A, Makde, R.D. | Deposit date: | 2020-06-10 | Release date: | 2020-10-14 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Crystal structure of XCC3289 from Xanthomonas campestris: homology with the N-terminal substrate-binding domain of Lon peptidase. Acta Crystallogr.,Sect.F, 76, 2020
|
|
7C9B
| Crystal structure of dipeptidase-E from Xenopus laevis | Descriptor: | Alpha-aspartyl dipeptidase, CALCIUM ION, SODIUM ION | Authors: | Kumar, A, Singh, R, Makde, R.D. | Deposit date: | 2020-06-05 | Release date: | 2021-06-09 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | Crystal structure of aspartyl dipeptidase from Xenopus laevis revealed ligand binding induced loop ordering and catalytic triad assembly. Proteins, 90, 2022
|
|
7CLE
| Non-Specific Class-c acidphosphatase from Sphingobium sp. RSMS | Descriptor: | Acid phosphatase, MAGNESIUM ION | Authors: | Gaur, N.K, Kumar, A, Sunder, S, Mukhopadhyaya, R, Makde, R.D. | Deposit date: | 2020-07-20 | Release date: | 2021-11-10 | Last modified: | 2024-10-09 | Method: | X-RAY DIFFRACTION (2.342 Å) | Cite: | Non-Specific Class-c acidphosphatase from Sphingobium sp. RSMS To Be Published
|
|
7DES
| |
8JCS
| |
8JCR
| Crystal structure of Procerain from Calotropis gigantea (pH 6.0) | Descriptor: | BETA-MERCAPTOETHANOL, GLYCEROL, N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE, ... | Authors: | Kumar, A, Jamdar, S.N, Srivastava, G, Makde, R.D. | Deposit date: | 2023-05-11 | Release date: | 2024-05-22 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | Crystal structure of Procerain from Calotropis gigantea To Be Published
|
|
8JCQ
| |
8JFS
| Phosphate bound acylphosphatase from Deinococcus radiodurans at 1 Angstrom resolution | Descriptor: | 1,2-ETHANEDIOL, Acylphosphatase, CITRIC ACID, ... | Authors: | Khakerwala, Z, Kumar, A, Makde, R.D. | Deposit date: | 2023-05-18 | Release date: | 2023-06-14 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (1 Å) | Cite: | Crystal structure of phosphate bound Acyl phosphatase mini-enzyme from Deinococcus radiodurans at 1 angstrom resolution. Biochem.Biophys.Res.Commun., 671, 2023
|
|
2QRX
| |
2QVA
| |