2DG1
 
 | | Crystal structure of Drp35, a 35kDa drug responsive protein from Staphylococcus aureus, complexed with Ca2+ | | Descriptor: | CALCIUM ION, DrP35, GLYCEROL | | Authors: | Tanaka, Y, Ohki, Y, Morikawa, K, Yao, M, Watanabe, N, Ohta, T, Tanaka, I. | | Deposit date: | 2006-03-07 | | Release date: | 2006-12-12 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (1.72 Å) | | Cite: | Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY
J.Biol.Chem., 282, 2007
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2DGJ
 | | Crystal structure of EbhA (756-1003 domain) from Staphylococcus aureus | | Descriptor: | ACETIC ACID, GLYCEROL, SULFATE ION, ... | | Authors: | Tanaka, Y, Yao, M, Kuroda, M, Watanabe, N, Ohta, T, Tanaka, I. | | Deposit date: | 2006-03-14 | | Release date: | 2007-03-20 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.35 Å) | | Cite: | A helical string of alternately connected three-helix bundles for the cell wall-associated adhesion protein Ebh from Staphylococcus aureus
Structure, 16, 2008
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8CAT
 | | The NADPH binding site on beef liver catalase | | Descriptor: | CATALASE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PROTOPORPHYRIN IX CONTAINING FE | | Authors: | Murthy, M.R.N, Reid III, T.J, Sicignano, A, Tanaka, N, Fita, I, Rossmann, M.G. | | Deposit date: | 1984-11-15 | | Release date: | 1985-04-01 | | Last modified: | 2023-09-27 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | The NADPH binding site on beef liver catalase.
Proc.Natl.Acad.Sci.USA, 82, 1985
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1UDD
 | | TenA homologue protein from P.horikoshii OT3 | | Descriptor: | transcriptional regulator | | Authors: | Itou, H, Yao, M, Watanabe, N, Tanaka, I. | | Deposit date: | 2003-04-28 | | Release date: | 2004-06-01 | | Last modified: | 2023-12-27 | | Method: | X-RAY DIFFRACTION (2.15 Å) | | Cite: | Structure analysis of PH1161 protein, a transcriptional activator TenA homologue from the hyperthermophilic archaeon Pyrococcus horikoshii.
Acta Crystallogr.,Sect.D, 60, 2004
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1ULY
 | | Crystal structure analysis of the ArsR homologue DNA-binding protein from P. horikoshii OT3 | | Descriptor: | hypothetical protein PH1932 | | Authors: | Itou, H, Yao, M, Watanabe, N, Tanaka, I. | | Deposit date: | 2003-09-17 | | Release date: | 2004-10-19 | | Last modified: | 2023-12-27 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Crystal structure of the PH1932 protein, a unique archaeal ArsR type winged-HTH transcription factor from Pyrococcus horikoshii OT3
Proteins, 70, 2008
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1V43
 | | Crystal Structure of ATPase subunit of ABC Sugar Transporter | | Descriptor: | sugar-binding transport ATP-binding protein | | Authors: | Ose, T, Fujie, T, Yao, M, Watanabe, N, Tanaka, I. | | Deposit date: | 2003-11-08 | | Release date: | 2004-11-16 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | Crystal structure of the ATP-binding cassette of multisugar transporter from Pyrococcus horikoshii OT3
Proteins, 57, 2004
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2ZDS
 | | Crystal Structure of SCO6571 from Streptomyces coelicolor A3(2) | | Descriptor: | Putative DNA-binding protein | | Authors: | Begum, P, Gao, Y.G, Sakai, N, Yao, M, Watanabe, N, Tanaka, I. | | Deposit date: | 2007-11-27 | | Release date: | 2008-12-02 | | Last modified: | 2019-10-16 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | Crystal structure of SCO6571 from Streptomyces coelicolor A3(2).
Protein Pept.Lett., 15, 2008
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1VCI
 | | Crystal structure of the ATP-binding cassette of multisugar transporter from Pyrococcus horikoshii OT3 complexed with ATP | | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, sugar-binding transport ATP-binding protein | | Authors: | Ose, T, Fujie, T, Yao, M, Watanabe, N, Tanaka, I. | | Deposit date: | 2004-03-08 | | Release date: | 2004-12-14 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (2.9 Å) | | Cite: | Crystal structure of the ATP-binding cassette of multisugar transporter from Pyrococcus horikoshii OT3
Proteins, 57, 2004
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1VDZ
 | | Crystal structure of A-type ATPase catalytic subunit A from Pyrococcus horikoshii OT3 | | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, A-type ATPase subunit A | | Authors: | Maegawa, Y, Morita, H, Yao, M, Watanabe, N, Tanaka, I. | | Deposit date: | 2004-03-26 | | Release date: | 2005-06-21 | | Last modified: | 2023-12-27 | | Method: | X-RAY DIFFRACTION (2.55 Å) | | Cite: | Crystal structure of A-type ATPase catalytic subunit A from Pyrococcus horikoshii OT3
To be Published
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2Z2E
 | | Crystal Structure of Canine Milk Lysozyme Stabilized against Non-enzymatic Deamidation | | Descriptor: | Lysozyme C, milk isozyme, SULFATE ION | | Authors: | Nonaka, Y, Akieda, D, Watanabe, N, Tanaka, I, Kamiya, M, Aizawa, T, Nitta, K, Demura, M, Kawano, K. | | Deposit date: | 2007-05-21 | | Release date: | 2007-11-27 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.01 Å) | | Cite: | Spontaneous asparaginyl deamidation of canine milk lysozyme under mild conditions
Proteins, 72, 2008
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2D5V
 | | Crystal structure of HNF-6alpha DNA-binding domain in complex with the TTR promoter | | Descriptor: | 5'-D(*AP*TP*TP*AP*TP*TP*GP*AP*CP*TP*TP*AP*GP*A)-3', 5'-D(*TP*CP*TP*AP*AP*GP*TP*CP*AP*AP*TP*AP*AP*T)-3', ACETATE ION, ... | | Authors: | Iyaguchi, D, Yao, M, Watanabe, N, Nishihira, J, Tanaka, I. | | Deposit date: | 2005-11-07 | | Release date: | 2006-12-05 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | DNA recognition mechanism of the ONECUT homeodomain of transcription factor HNF-6
Structure, 15, 2007
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1WE5
 | | Crystal Structure of Alpha-Xylosidase from Escherichia coli | | Descriptor: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Putative family 31 glucosidase yicI | | Authors: | Ose, T, Kitamura, M, Okuyama, M, Mori, H, Kimura, A, Watanabe, N, Yao, M, Tanaka, I. | | Deposit date: | 2004-05-24 | | Release date: | 2005-02-15 | | Last modified: | 2017-10-11 | | Method: | X-RAY DIFFRACTION (2.4 Å) | | Cite: | Crystal Structure of Alpha-Xylosidase from Escherichia coli
TO BE PUBLISHED
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4Y04
 | | Crystal structure of dipeptidyl peptidase 11 (DPP11) from Porphyromonas gingivalis (Space) | | Descriptor: | GLYCEROL, POTASSIUM ION, Peptidase S46 | | Authors: | Sakamoto, Y, Suzuki, Y, Iizuka, I, Tateoka, C, Roppongi, S, Fujimoto, M, Inaka, K, Tanaka, H, Yamada, M, Ohta, K, Nonaka, T, Ogasawara, W, Tanaka, N. | | Deposit date: | 2015-02-05 | | Release date: | 2015-07-15 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (1.66 Å) | | Cite: | Structural and mutational analyses of dipeptidyl peptidase 11 from Porphyromonas gingivalis reveal the molecular basis for strict substrate specificity.
Sci Rep, 5, 2015
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1WZC
 | | Crystal structure of Pyrococcus horikoshii mannosyl-3-phosphoglycerate phosphatase complexed with MG2+ and phosphate | | Descriptor: | MAGNESIUM ION, Mannosyl-3-phosphoglycerate phosphatase, PHOSPHATE ION | | Authors: | Kawamura, T, Watanabe, N, Tanaka, I. | | Deposit date: | 2005-03-04 | | Release date: | 2006-02-28 | | Last modified: | 2024-05-29 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | Structure of mannosyl-3-phosphoglycerate phosphatase from Pyrococcus horikoshii.
Acta Crystallogr.,Sect.D, 64, 2008
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2E6U
 | | Crystal structure of hypothetical protein PH1109 from Pyrococcus horikoshii | | Descriptor: | CALCIUM ION, CHLORIDE ION, COENZYME A, ... | | Authors: | Kitago, Y, Min, Y, Watanabe, N, Tanaka, I. | | Deposit date: | 2007-01-03 | | Release date: | 2007-01-23 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | Structure determination of a novel protein by sulfur SAD using chromium radiation in combination with a new crystal-mounting method
ACTA CRYSTALLOGR.,SECT.D, 61, 2005
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2EEX
 | | Crystal structure of Cel44A, GH family 44 endoglucanase from Clostridium thermocellum | | Descriptor: | CALCIUM ION, CHLORIDE ION, Endoglucanase, ... | | Authors: | Kitago, Y, Karita, S, Watanabe, N, Sakka, K, Tanaka, I. | | Deposit date: | 2007-02-19 | | Release date: | 2007-09-18 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Crystal structure of Cel44A, a glycoside hydrolase family 44 endoglucanase from Clostridium thermocellum.
J.Biol.Chem., 282, 2007
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2EJ1
 | | Crystal structure of Cel44A, GH family 44 endoglucanase from Clostridium thermocellum | | Descriptor: | CALCIUM ION, CHLORIDE ION, Endoglucanase, ... | | Authors: | Kitago, Y, Karita, S, Watanabe, N, Sakka, K, Tanaka, I. | | Deposit date: | 2007-03-14 | | Release date: | 2007-09-18 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | Crystal structure of Cel44A, a glycoside hydrolase family 44 endoglucanase from Clostridium thermocellum.
J.Biol.Chem., 282, 2007
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2E0P
 | | The crystal structure of Cel44A | | Descriptor: | CALCIUM ION, CHLORIDE ION, Endoglucanase, ... | | Authors: | Kitago, Y, Karita, S, Watanabe, N, Sakka, K, Tanaka, I. | | Deposit date: | 2006-10-11 | | Release date: | 2007-09-18 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | Crystal structure of Cel44A, a glycoside hydrolase family 44 endoglucanase from Clostridium thermocellum.
J.Biol.Chem., 282, 2007
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2EO7
 | | Crystal structure of Cel44A, GH family 44 endoglucanase from Clostridium thermocellum | | Descriptor: | CALCIUM ION, CHLORIDE ION, Endoglucanase, ... | | Authors: | Kitao, Y, Karita, S, Watanabe, N, Sakka, K, Tanaka, I. | | Deposit date: | 2007-03-29 | | Release date: | 2007-09-18 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (1.75 Å) | | Cite: | Crystal structure of Cel44A, a glycoside hydrolase family 44 endoglucanase from Clostridium thermocellum.
J.Biol.Chem., 282, 2007
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2EQD
 | | Crystal structure of Cel44A, GH family 44 endoglucanase from Clostridium thermocellum | | Descriptor: | CALCIUM ION, CHLORIDE ION, Endoglucanase, ... | | Authors: | Kitago, Y, Karita, S, Watanabe, N, Sakka, K, Tanaka, I. | | Deposit date: | 2007-03-30 | | Release date: | 2007-09-18 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (2.8 Å) | | Cite: | Crystal structure of Cel44A, a glycoside hydrolase family 44 endoglucanase from Clostridium thermocellum.
J.Biol.Chem., 282, 2007
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2CWI
 | | X-ray crystal structure analysis of recombinant wild-type canine milk lysozyme (apo-type) | | Descriptor: | Lysozyme C, milk isozyme, SULFATE ION | | Authors: | Akieda, D, Yasui, M, Aizawa, T, Yao, M, Watanabe, N, Tanaka, I, Demura, M, Kawano, K, Nitta, K. | | Deposit date: | 2005-06-20 | | Release date: | 2006-06-20 | | Last modified: | 2018-01-24 | | Method: | X-RAY DIFFRACTION (1.941 Å) | | Cite: | Construction of an expression system of canine milk lysozyme in the methylotrophic yeast Pichia pastoris
To be Published
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1WQA
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2E4T
 | | Crystal structure of Cel44A, GH family 44 endoglucanase from Clostridium thermocellum | | Descriptor: | CALCIUM ION, CHLORIDE ION, Endoglucanase, ... | | Authors: | Kitago, Y, Karita, S, Watanabe, N, Sakka, K, Tanaka, I. | | Deposit date: | 2006-12-16 | | Release date: | 2007-09-18 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (0.96 Å) | | Cite: | Crystal structure of Cel44A, a glycoside hydrolase family 44 endoglucanase from Clostridium thermocellum.
J.Biol.Chem., 282, 2007
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4XZY
 | | Crystal structure of dipeptidyl peptidase 11 (DPP11) from Porphyromonas gingivalis | | Descriptor: | GLYCEROL, Peptidase S46 | | Authors: | Sakamoto, Y, Suzuki, Y, Iizuka, I, Tateoka, C, Roppongi, S, Fujimoto, M, Nonaka, T, Ogasawara, W, Tanaka, N. | | Deposit date: | 2015-02-05 | | Release date: | 2015-07-15 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (2.7 Å) | | Cite: | Structural and mutational analyses of dipeptidyl peptidase 11 from Porphyromonas gingivalis reveal the molecular basis for strict substrate specificity.
Sci Rep, 5, 2015
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4Y01
 | | Crystal structure of dipeptidyl peptidase 11 (DPP11) from Porphyromonas gingivalis | | Descriptor: | GLYCEROL, Peptidase S46 | | Authors: | Sakamoto, Y, Suzuki, Y, Iizuka, I, Tateoka, C, Roppongi, S, Fujimoto, M, Nonaka, T, Ogasawara, W, Tanaka, N. | | Deposit date: | 2015-02-05 | | Release date: | 2015-07-15 | | Last modified: | 2020-02-05 | | Method: | X-RAY DIFFRACTION (2.46 Å) | | Cite: | Structural and mutational analyses of dipeptidyl peptidase 11 from Porphyromonas gingivalis reveal the molecular basis for strict substrate specificity.
Sci Rep, 5, 2015
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