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1WZI
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BU of 1wzi by Molmil
Structural basis for alteration of cofactor specificity of Malate dehydrogenase from Thermus flavus
Descriptor: Malate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Tomita, T, Fushinobu, S, Kuzuyama, T, Nishiyama, M.
Deposit date:2005-03-05
Release date:2006-03-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for alteration of cofactor specificity of malate dehydrogenase from Thermus flavus
to be published
1UC4
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BU of 1uc4 by Molmil
Structure of diol dehydratase complexed with (S)-1,2-propanediol
Descriptor: AMMONIUM ION, CYANOCOBALAMIN, POTASSIUM ION, ...
Authors:Shibata, N, Nakanishi, Y, Fukuoka, M, Yamanishi, M, Yasuoka, N, Toraya, T.
Deposit date:2003-04-08
Release date:2003-07-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural rationalization for the lack of stereospecificity in coenzyme B12-dependent diol dehydratase
J.BIOL.CHEM., 278, 2003
1Y7T
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BU of 1y7t by Molmil
Crystal structure of NAD(H)-depenent malate dehydrogenase complexed with NADPH
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Malate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Tomita, T, Fushinobu, S, Kuzuyama, T, Nishiyama, M.
Deposit date:2004-12-10
Release date:2005-08-02
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of NAD-dependent malate dehydrogenase complexed with NADP(H)
Biochem.Biophys.Res.Commun., 334, 2005
5GUK
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BU of 5guk by Molmil
Crystal structure of apo form of cyclolavandulyl diphosphate synthase (CLDS) from Streptomyces sp. CL190
Descriptor: CHLORIDE ION, Cyclolavandulyl diphosphate synthase
Authors:Tomita, T, Kobayashi, M, Nishiyama, M, Kuzuyama, T.
Deposit date:2016-08-29
Release date:2017-08-30
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and Mechanism of the Monoterpene Cyclolavandulyl Diphosphate Synthase that Catalyzes Consecutive Condensation and Cyclization.
Angew. Chem. Int. Ed. Engl., 56, 2017
5GUL
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BU of 5gul by Molmil
Crystal structure of Tris/PPix2/Mg2+ bound form of cyclolavandulyl diphosphate synthase (CLDS) from Streptomyces sp. CL190
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Cyclolavandulyl diphosphate synthase, MAGNESIUM ION, ...
Authors:Tomita, T, Kobayashi, M, Nishiyama, M, Kuzuyama, T.
Deposit date:2016-08-29
Release date:2017-08-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Structure and Mechanism of the Monoterpene Cyclolavandulyl Diphosphate Synthase that Catalyzes Consecutive Condensation and Cyclization.
Angew. Chem. Int. Ed. Engl., 56, 2017
8H3M
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BU of 8h3m by Molmil
Conformation 1 of SARS-CoV-2 Omicron BA.1 Variant Spike protein complexed with MO1 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, MO1 heavy chain, Spike glycoprotein
Authors:Ishimaru, H, Nishimura, M, Sutandhio, S, Shigematsu, H, Kato, K, Hasegawa, N, Mori, Y.
Deposit date:2022-10-09
Release date:2023-05-10
Last modified:2023-08-02
Method:ELECTRON MICROSCOPY (2.48 Å)
Cite:Identification and Analysis of Monoclonal Antibodies with Neutralizing Activity against Diverse SARS-CoV-2 Variants.
J.Virol., 97, 2023
8H3N
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BU of 8h3n by Molmil
Conformation 2 of SARS-CoV-2 Omicron BA.1 Variant Spike protein complexed with MO1 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, MO1 heavy-chain, MO1 light chain, ...
Authors:Ishimaru, H, Nishimura, M, Sutandhio, S, Shigematsu, H, Kato, K, Hasegawa, N, Mori, Y.
Deposit date:2022-10-09
Release date:2023-05-10
Last modified:2023-08-02
Method:ELECTRON MICROSCOPY (2.73 Å)
Cite:Identification and Analysis of Monoclonal Antibodies with Neutralizing Activity against Diverse SARS-CoV-2 Variants.
J.Virol., 97, 2023
7YLZ
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BU of 7ylz by Molmil
Unliganded form of hydroxyamidotransferase TsnB9
Descriptor: SULFATE ION, hydroxyamidotransferase
Authors:Nagata, R, Nishiyama, M, Kuzuyama, T.
Deposit date:2022-07-27
Release date:2023-05-31
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Substrate Recognition Mechanism of a Trichostatin A-Forming Hydroxyamidotransferase.
Biochemistry, 62, 2023
5HN4
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BU of 5hn4 by Molmil
Crystal structure of beta-decarboxylating dehydrogenase (TK0280) from Thermococcus kodakarensis complexed with Mn and homoisocitrate
Descriptor: (1R,2S)-1-hydroxybutane-1,2,4-tricarboxylic acid, Homoisocitrate dehydrogenase, IMIDAZOLE, ...
Authors:Shimizu, T, Tomita, T, Nishiyama, M.
Deposit date:2016-01-18
Release date:2016-12-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Structure and function of an ancestral-type beta-decarboxylating dehydrogenase from Thermococcus kodakarensis
Biochem. J., 474, 2017
5HN6
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BU of 5hn6 by Molmil
Crystal structure of beta-decarboxylating dehydrogenase (TK0280) from Thermococcus kodakarensis complexed with Mn and 3-isopropylmalate
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 3-ISOPROPYLMALIC ACID, Homoisocitrate dehydrogenase, ...
Authors:Shimizu, T, Tomita, T, Nishiyama, M.
Deposit date:2016-01-18
Release date:2016-12-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure and function of an ancestral-type beta-decarboxylating dehydrogenase from Thermococcus kodakarensis
Biochem. J., 474, 2017
5HN5
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BU of 5hn5 by Molmil
Crystal structure of beta-decarboxylating dehydrogenase (TK0280) from Thermococcus kodakarensis complexed with Mn and isocitrate
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Homoisocitrate dehydrogenase, ISOCITRIC ACID, ...
Authors:Shimizu, T, Tomita, T, Nishiyama, M.
Deposit date:2016-01-18
Release date:2016-12-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structure and function of an ancestral-type beta-decarboxylating dehydrogenase from Thermococcus kodakarensis
Biochem. J., 474, 2017
5HN3
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BU of 5hn3 by Molmil
Crystal structure of beta-decarboxylating dehydrogenase (TK0280) from Thermococcus kodakarensis (apo form)
Descriptor: Homoisocitrate dehydrogenase, IMIDAZOLE, SODIUM ION
Authors:Shimizu, T, Tomita, T, Nishiyama, M.
Deposit date:2016-01-18
Release date:2016-12-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure and function of an ancestral-type beta-decarboxylating dehydrogenase from Thermococcus kodakarensis
Biochem. J., 474, 2017
8XI6
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BU of 8xi6 by Molmil
SARS-CoV-2 Omicron BQ.1.1 Variant Spike Protein Complexed with MO11 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Ishimaru, H, Nishimura, M, Shigematsu, H, Marini, M.I, Hasegawa, N, Takamiya, R, Iwata, S, Mori, Y.
Deposit date:2023-12-19
Release date:2024-04-24
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (2.3 Å)
Cite:Epitopes of an antibody that neutralizes a wide range of SARS-CoV-2 variants in a conserved subdomain 1 of the spike protein.
J.Virol., 98, 2024
5EIO
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BU of 5eio by Molmil
Crystal structure of LysY from Thermus thermophilus complexed with NADP+ and LysW-gamma-aminoadipic semialdehyde
Descriptor: ACETIC ACID, N-acetyl-gamma-glutamyl-phosphate/N-acetyl-gamma-aminoadipyl-phosphate reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Shimizu, T, Tomita, T, Nishiyama, M.
Deposit date:2015-10-30
Release date:2016-03-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of the LysYLysW Complex from Thermus thermophilus.
J.Biol.Chem., 291, 2016
5EIN
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BU of 5ein by Molmil
Crystal structure of C148A mutant of LysY from Thermus thermophilus in complex with NADP+ and LysW-gamma-aminoadipic acid
Descriptor: Alpha-aminoadipate carrier protein LysW, FORMIC ACID, N-acetyl-gamma-glutamyl-phosphate/N-acetyl-gamma-aminoadipyl-phosphate reductase, ...
Authors:Shimizu, T, Tomita, T, Nishiyama, M.
Deposit date:2015-10-30
Release date:2016-03-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of the LysYLysW Complex from Thermus thermophilus.
J.Biol.Chem., 291, 2016
1ET7
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BU of 1et7 by Molmil
CRYSTAL STRUCTURE OF NITRITE REDUCTASE HIS255ASP MUTANT FROM ALCALIGENES FAECALIS S-6
Descriptor: CADMIUM ION, COPPER (II) ION, NITRITE REDUCTASE
Authors:Boulanger, M.J, Kukimoto, M, Nishiyama, M, Horinouchi, S, Murphy, M.E.P.
Deposit date:2000-04-12
Release date:2000-08-24
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Catalytic roles for two water bridged residues (Asp-98 and His-255) in the active site of copper-containing nitrite reductase.
J.Biol.Chem., 275, 2000
7C9R
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BU of 7c9r by Molmil
STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF THIORHODOVIBRIO STRAIN 970
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (6~{E},8~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{E},24~{E},26~{E})-2,31-dimethoxy-2,6,10,14,19,23,27,31-octamethyl-dotriaconta-6,8,10,12,14,16,18,20,22,24,26-undecaene, Alpha subunit 1 of light-harvesting 1 complex, ...
Authors:Tani, K, Kanno, R, Makino, Y, Hall, M, Takenouchi, M, Imanishi, M, Yu, L.-J, Overmann, J, Madigan, M.T, Kimura, Y, Mizoguchi, A, Humbel, B.M, Wang-Otomo, Z.-Y.
Deposit date:2020-06-07
Release date:2020-10-07
Last modified:2020-10-14
Method:ELECTRON MICROSCOPY (2.82 Å)
Cite:Cryo-EM structure of a Ca 2+ -bound photosynthetic LH1-RC complex containing multiple alpha beta-polypeptides.
Nat Commun, 11, 2020
1ET8
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BU of 1et8 by Molmil
CRYSTAL STRUCTURE OF NITRITE REDUCTASE HIS255ASN MUTANT FROM ALCALIGENES FAECALIS
Descriptor: COPPER (II) ION, NITRITE REDUCTASE, ZINC ION
Authors:Boulanger, M.J, Kukimoto, M, Nishiyama, M, Horinouchi, S, Murphy, M.E.P.
Deposit date:2000-04-12
Release date:2000-08-24
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Catalytic roles for two water bridged residues (Asp-98 and His-255) in the active site of copper-containing nitrite reductase.
J.Biol.Chem., 275, 2000
1ET5
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BU of 1et5 by Molmil
CRYSTAL STRUCTURE OF NITRITE REDUCTASE ASP98ASN MUTANT FROM ALCALIGENES FAECALIS S-6
Descriptor: COPPER (II) ION, NITRITE REDUCTASE, ZINC ION
Authors:Boulanger, M.J, Kukimoto, M, Nishiyama, M, Horinouchi, S, Murphy, M.E.P.
Deposit date:2000-04-12
Release date:2000-08-24
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Catalytic roles for two water bridged residues (Asp-98 and His-255) in the active site of copper-containing nitrite reductase.
J.Biol.Chem., 275, 2000
4YGB
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BU of 4ygb by Molmil
Crystal structure of ERGIC-53/MCFD2, monoclinic calcium-free form
Descriptor: CALCIUM ION, GLYCEROL, Multiple coagulation factor deficiency protein 2, ...
Authors:Satoh, T, Nishio, M, Yagi-Utsumi, M, Suzuki, K, Anzai, T, Mizushima, T, Kamiya, Y, Kato, K.
Deposit date:2015-02-26
Release date:2016-04-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallographic snapshots of the EF-hand protein MCFD2 complexed with the intracellular lectin ERGIC-53 involved in glycoprotein transport.
Acta Crystallogr.,Sect.F, 76, 2020
4YGD
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BU of 4ygd by Molmil
Crystal structure of ERGIC-53/MCFD2, monoclinic calcium-bound form 2
Descriptor: CALCIUM ION, CHLORIDE ION, Multiple coagulation factor deficiency protein 2, ...
Authors:Satoh, T, Nishio, M, Yagi-Utsumi, M, Suzuki, K, Anzai, T, Mizushima, T, Kamiya, Y, Kato, K.
Deposit date:2015-02-26
Release date:2016-04-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Crystallographic snapshots of the EF-hand protein MCFD2 complexed with the intracellular lectin ERGIC-53 involved in glycoprotein transport.
Acta Crystallogr.,Sect.F, 76, 2020
3WFZ
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BU of 3wfz by Molmil
Crystal structure of Galacto-N-Biose/Lacto-N-Biose I Phosphorylase C236Y Mutant
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, Lacto-N-biose phosphorylase
Authors:Koyama, Y, Hidaka, M, Kawakami, M, Nishimoto, M, Kitaoka, M.
Deposit date:2013-07-25
Release date:2013-10-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Directed evolution to enhance thermostability of galacto-N-biose/lacto-N-biose I phosphorylase.
Protein Eng.Des.Sel., 26, 2013
4YGE
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BU of 4yge by Molmil
Crystal structure of ERGIC-53/MCFD2, trigonal calcium-bound form 2
Descriptor: CALCIUM ION, CHLORIDE ION, Multiple coagulation factor deficiency protein 2, ...
Authors:Satoh, T, Nishio, M, Yagi-Utsumi, M, Suzuki, K, Anzai, T, Mizushima, T, Kamiya, Y, Kato, K.
Deposit date:2015-02-26
Release date:2016-04-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Crystallographic snapshots of the EF-hand protein MCFD2 complexed with the intracellular lectin ERGIC-53 involved in glycoprotein transport.
Acta Crystallogr.,Sect.F, 76, 2020
4YGC
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BU of 4ygc by Molmil
Crystal structure of ERGIC-53/MCFD2, monoclinic calcium-bound form 1
Descriptor: CALCIUM ION, CHLORIDE ION, Multiple coagulation factor deficiency protein 2, ...
Authors:Satoh, T, Nishio, M, Yagi-Utsumi, M, Suzuki, K, Anzai, T, Mizushima, T, Kamiya, Y, Kato, K.
Deposit date:2015-02-26
Release date:2016-04-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystallographic snapshots of the EF-hand protein MCFD2 complexed with the intracellular lectin ERGIC-53 involved in glycoprotein transport.
Acta Crystallogr.,Sect.F, 76, 2020
1K1Z
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BU of 1k1z by Molmil
Solution structure of N-terminal SH3 domain mutant(P33G) of murine Vav
Descriptor: vav
Authors:Ogura, K, Nagata, K, Horiuchi, M, Ebisui, E, Hasuda, T, Yuzawa, S, Nishida, M, Hatanaka, H, Inagaki, F.
Deposit date:2001-09-26
Release date:2001-10-10
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of N-terminal SH3 domain of Vav and the recognition site for Grb2 C-terminal SH3 domain
J.BIOMOL.NMR, 22, 2002

225158

數據於2024-09-18公開中

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