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3G5R
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BU of 3g5r by Molmil
Crystal structure of Thermus thermophilus TrmFO in complex with tetrahydrofolate
Descriptor: (6S)-5,6,7,8-TETRAHYDROFOLATE, 1,2-ETHANEDIOL, CALCIUM ION, ...
Authors:Nishimasu, H, Ishitani, R, Hori, H, Nureki, O.
Deposit date:2009-02-05
Release date:2009-05-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Atomic structure of a folate/FAD-dependent tRNA T54 methyltransferase
Proc.Natl.Acad.Sci.USA, 106, 2009
5J8L
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BU of 5j8l by Molmil
Crystal structure of D-tagatose 3-epimerase C66S from Pseudomonas cichorii in complex with 1-deoxy L-tagatose, using a crystal grown in microgravity
Descriptor: 1-deoxy-L-tagatose, 1-deoxy-beta-L-tagatopyranose, D-tagatose 3-epimerase, ...
Authors:Yoshida, H, Yoshihara, A, Izumori, K, Kamitori, S.
Deposit date:2016-04-08
Release date:2016-04-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:X-ray structures of the Pseudomonas cichorii D-tagatose 3-epimerase mutant form C66S recognizing deoxy sugars as substrates
Appl. Microbiol. Biotechnol., 100, 2016
8XI6
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BU of 8xi6 by Molmil
SARS-CoV-2 Omicron BQ.1.1 Variant Spike Protein Complexed with MO11 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Ishimaru, H, Nishimura, M, Shigematsu, H, Marini, M.I, Hasegawa, N, Takamiya, R, Iwata, S, Mori, Y.
Deposit date:2023-12-19
Release date:2024-04-24
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (2.3 Å)
Cite:Epitopes of an antibody that neutralizes a wide range of SARS-CoV-2 variants in a conserved subdomain 1 of the spike protein.
J.Virol., 98, 2024
4XSM
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BU of 4xsm by Molmil
Crystal structure of D-tagatose 3-epimerase C66S from Pseudomonas cichorii in complex with D-talitol
Descriptor: D-altritol, D-tagatose 3-epimerase, MANGANESE (II) ION
Authors:Yoshida, H, Yoshihara, A, Ishii, T, Izumori, K, Kamitori, S.
Deposit date:2015-01-22
Release date:2016-01-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:X-ray structures of the Pseudomonas cichorii D-tagatose 3-epimerase mutant form C66S recognizing deoxy sugars as substrates
Appl. Microbiol. Biotechnol., 100, 2016
4XSL
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BU of 4xsl by Molmil
Crystal strcutre of D-tagatose 3-epimerase C66S from Pseudomonas cichorii in complex with glycerol
Descriptor: D-tagatose 3-epimerase, GLYCEROL, MANGANESE (II) ION
Authors:Yoshida, H, Yoshihara, A, Ishii, T, Izumori, K, Kamitori, S.
Deposit date:2015-01-22
Release date:2016-01-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:X-ray structures of the Pseudomonas cichorii D-tagatose 3-epimerase mutant form C66S recognizing deoxy sugars as substrates
Appl. Microbiol. Biotechnol., 100, 2016
4YH8
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BU of 4yh8 by Molmil
Structure of yeast U2AF complex
Descriptor: Splicing factor U2AF 23 kDa subunit, Splicing factor U2AF 59 kDa subunit, ZINC ION
Authors:Yoshida, H, Park, S.Y, Urano, T, Obayashi, E.
Deposit date:2015-02-27
Release date:2015-08-12
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A novel 3' splice site recognition by the two zinc fingers in the U2AF small subunit.
Genes Dev., 29, 2015
5YRB
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BU of 5yrb by Molmil
Crystal Structure of Oxidized Cypovirus Polyhedra R13A/E73C/Y83C/S193C/A194C Mutant
Descriptor: 1,2-ETHANEDIOL, Polyhedrin
Authors:Negishi, H, Abe, S, Yamashita, K, Hirata, K, Niwase, K, Boudes, M, Coulibaly, F, Mori, H, Ueno, T.
Deposit date:2017-11-09
Release date:2018-02-21
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Supramolecular protein cages constructed from a crystalline protein matrix
Chem. Commun. (Camb.), 54, 2018
5YRA
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BU of 5yra by Molmil
Crystal Structure of Cypovirus Polyhedra R13A/S193C/A194C Mutant
Descriptor: 1,2-ETHANEDIOL, Polyhedrin
Authors:Negishi, H, Abe, S, Yamashita, K, Hirata, K, Niwase, K, Boudes, M, Coulibaly, F, Mori, H, Ueno, T.
Deposit date:2017-11-09
Release date:2018-02-21
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Supramolecular protein cages constructed from a crystalline protein matrix
Chem. Commun. (Camb.), 54, 2018
5YRC
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BU of 5yrc by Molmil
Crystal Structure of Oxidized Cypovirus Polyhedra R13A/E73C/Y83C Mutant
Descriptor: 1,2-ETHANEDIOL, Polyhedrin
Authors:Negishi, H, Abe, S, Yamashita, K, Hirata, K, Niwase, K, Boudes, M, Coulibaly, F, Mori, H, Ueno, T.
Deposit date:2017-11-09
Release date:2018-02-21
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Supramolecular protein cages constructed from a crystalline protein matrix
Chem. Commun. (Camb.), 54, 2018
3ITY
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BU of 3ity by Molmil
Metal-free form of Pseudomonas stutzeri L-rhamnose isomerase
Descriptor: L-rhamnose isomerase
Authors:Yoshida, H, Yamaji, M, Ishii, T, Izumori, K, Kamitori, S.
Deposit date:2009-08-28
Release date:2010-02-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Catalytic reaction mechanism of Pseudomonas stutzeri l-rhamnose isomerase deduced from X-ray structures
Febs J., 277, 2010
3ITO
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BU of 3ito by Molmil
Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant D327N in complex with D-psicose
Descriptor: L-rhamnose isomerase, MANGANESE (II) ION, alpha-D-psicofuranose
Authors:Yoshida, H, Yamaji, M, Ishii, T, Izumori, K, Kamitori, S.
Deposit date:2009-08-28
Release date:2010-02-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Catalytic reaction mechanism of Pseudomonas stutzeri l-rhamnose isomerase deduced from X-ray structures
Febs J., 277, 2010
3ITT
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BU of 3itt by Molmil
Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant S329K in complex with L-rhamnose
Descriptor: L-RHAMNOSE, L-rhamnose isomerase, MANGANESE (II) ION
Authors:Yoshida, H, Yamaji, M, Ishii, T, Izumori, K, Kamitori, S.
Deposit date:2009-08-28
Release date:2010-02-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Catalytic reaction mechanism of Pseudomonas stutzeri l-rhamnose isomerase deduced from X-ray structures
Febs J., 277, 2010
3IUD
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BU of 3iud by Molmil
Cu2+-bound form of Pseudomonas stutzeri L-rhamnose isomerase
Descriptor: COPPER (II) ION, L-rhamnose isomerase
Authors:Yoshida, H, Yamaji, M, Ishii, T, Izumori, K, Kamitori, S.
Deposit date:2009-08-31
Release date:2010-02-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Catalytic reaction mechanism of Pseudomonas stutzeri l-rhamnose isomerase deduced from X-ray structures
Febs J., 277, 2010
3ITL
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BU of 3itl by Molmil
Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant D327N in complex with L-rhamnulose
Descriptor: 6-deoxy-beta-L-fructofuranose, L-rhamnose isomerase, MANGANESE (II) ION
Authors:Yoshida, H, Yamaji, M, Ishii, T, Izumori, K, Kamitori, S.
Deposit date:2009-08-28
Release date:2010-02-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Catalytic reaction mechanism of Pseudomonas stutzeri l-rhamnose isomerase deduced from X-ray structures
Febs J., 277, 2010
3IUI
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BU of 3iui by Molmil
Zn2+-bound form of Pseudomonas stutzeri L-rhamnose isomerase
Descriptor: L-rhamnose isomerase, ZINC ION
Authors:Yoshida, H, Yamaji, M, Ishii, T, Izumori, K, Kamitori, S.
Deposit date:2009-08-31
Release date:2010-02-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Catalytic reaction mechanism of Pseudomonas stutzeri l-rhamnose isomerase deduced from X-ray structures
Febs J., 277, 2010
3ITX
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BU of 3itx by Molmil
Mn2+ bound form of Pseudomonas stutzeri L-rhamnose isomerase
Descriptor: L-rhamnose isomerase, MANGANESE (II) ION
Authors:Yoshida, H, Yamaji, M, Ishii, T, Izumori, K, Kamitori, S.
Deposit date:2009-08-28
Release date:2010-02-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Catalytic reaction mechanism of Pseudomonas stutzeri l-rhamnose isomerase deduced from X-ray structures
Febs J., 277, 2010
3ITV
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BU of 3itv by Molmil
Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant S329K in complex with D-psicose
Descriptor: D-psicose, L-rhamnose isomerase, MANGANESE (II) ION
Authors:Yoshida, H, Yamaji, M, Ishii, T, Izumori, K, Kamitori, S.
Deposit date:2009-08-28
Release date:2010-02-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Catalytic reaction mechanism of Pseudomonas stutzeri l-rhamnose isomerase deduced from X-ray structures
Febs J., 277, 2010
3IUH
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BU of 3iuh by Molmil
Co2+-bound form of Pseudomonas stutzeri L-rhamnose isomerase
Descriptor: COBALT (II) ION, L-rhamnose isomerase
Authors:Yoshida, H, Yamaji, M, Ishii, T, Izumori, K, Kamitori, S.
Deposit date:2009-08-31
Release date:2010-02-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Catalytic reaction mechanism of Pseudomonas stutzeri l-rhamnose isomerase deduced from X-ray structures
Febs J., 277, 2010
5KL3
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BU of 5kl3 by Molmil
Wilms Tumor Protein (WT1) ZnF2-4 Q369H in complex with DNA
Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*AP*GP*T)-3'), DNA (5'-D(*TP*AP*CP*TP*CP*CP*CP*AP*CP*GP*C)-3'), ...
Authors:Hashimoto, H, Cheng, X.
Deposit date:2016-06-23
Release date:2016-09-14
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.449 Å)
Cite:Denys-Drash syndrome associated WT1 glutamine 369 mutants have altered sequence-preferences and altered responses to epigenetic modifications.
Nucleic Acids Res., 44, 2016
5KL7
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BU of 5kl7 by Molmil
Wilms Tumor Protein (WT1) ZnF2-4Q369R in complex with carboxylated DNA
Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*(1CC)P*GP*T)-3'), DNA (5'-D(*TP*AP*(5CM)P*GP*CP*CP*CP*AP*CP*GP*C)-3'), ...
Authors:Hashimoto, H, Cheng, X.
Deposit date:2016-06-23
Release date:2016-09-14
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.579 Å)
Cite:Denys-Drash syndrome associated WT1 glutamine 369 mutants have altered sequence-preferences and altered responses to epigenetic modifications.
Nucleic Acids Res., 44, 2016
4Q0S
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BU of 4q0s by Molmil
Crystal structure of Acinetobacter sp. DL28 L-ribose isomerase in complex with ribitol
Descriptor: COBALT (II) ION, COBALT HEXAMMINE(III), D-ribitol, ...
Authors:Yoshida, H, Yoshihara, A, Teraoka, M, Izumori, K, Kamitori, S.
Deposit date:2014-04-02
Release date:2014-05-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:X-ray structure of a novel L-ribose isomerase acting on a non-natural sugar L-ribose as its ideal substrate.
Febs J., 281, 2014
4Q0P
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BU of 4q0p by Molmil
Crystal structure of Acinetobacter sp. DL28 L-ribose isomerase in complex with L-ribose
Descriptor: COBALT (II) ION, COBALT HEXAMMINE(III), L-Ribose isomerase, ...
Authors:Yoshida, H, Yoshihara, A, Teraoka, M, Izumori, K, Kamitori, S.
Deposit date:2014-04-02
Release date:2014-05-28
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:X-ray structure of a novel L-ribose isomerase acting on a non-natural sugar L-ribose as its ideal substrate.
Febs J., 281, 2014
4Q0V
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BU of 4q0v by Molmil
Crystal structure of Acinetobacter sp. DL28 L-ribose isomerase mutant E204Q in complex with L-ribulose
Descriptor: COBALT (II) ION, COBALT HEXAMMINE(III), L-Ribose isomerase, ...
Authors:Yoshida, H, Yoshihara, A, Teraoka, M, Izumori, K, Kamitori, S.
Deposit date:2014-04-02
Release date:2014-05-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:X-ray structure of a novel L-ribose isomerase acting on a non-natural sugar L-ribose as its ideal substrate.
Febs J., 281, 2014
4Q0Q
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BU of 4q0q by Molmil
Crystal structure of Acinetobacter sp. DL28 L-ribose isomerase in complex with L-ribulose
Descriptor: COBALT (II) ION, COBALT HEXAMMINE(III), L-Ribose isomerase, ...
Authors:Yoshida, H, Yoshihara, A, Teraoka, M, Izumori, K, Kamitori, S.
Deposit date:2014-04-02
Release date:2014-05-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:X-ray structure of a novel L-ribose isomerase acting on a non-natural sugar L-ribose as its ideal substrate.
Febs J., 281, 2014
4Q0U
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BU of 4q0u by Molmil
Crystal structure of Acinetobacter sp. DL28 L-ribose isomerase mutant E204Q in complex with L-ribose
Descriptor: COBALT (II) ION, COBALT HEXAMMINE(III), L-Ribose isomerase, ...
Authors:Yoshida, H, Yoshihara, A, Teraoka, M, Izumori, K, Kamitori, S.
Deposit date:2014-04-02
Release date:2014-05-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:X-ray structure of a novel L-ribose isomerase acting on a non-natural sugar L-ribose as its ideal substrate.
Febs J., 281, 2014

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數據於2024-07-24公開中

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