3ZV0
| Structure of the SHQ1P-CBF5P complex | Descriptor: | GLYCEROL, H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4, PROTEIN SHQ1 | Authors: | Walbott, H, Machado-Pinilla, R, Liger, D, Blaud, M, Rety, S, Grozdanov, P.N, Godin, K, vanTilbeurgh, H, Varani, G, Meier, U.T, Leulliot, N. | Deposit date: | 2011-07-22 | Release date: | 2011-11-30 | Last modified: | 2024-05-08 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | The H/Aca Rnp Assembly Factor Shq1 Functions as an RNA Mimic. Genes Dev., 25, 2011
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2AQC
| NMR Structural analysis of archaeal Nop10 | Descriptor: | Ribosome biogenesis protein Nop10, ZINC ION | Authors: | Hamma, T, Reichow, S.L, Varani, G, Ferre-D'Amare, A.R. | Deposit date: | 2005-08-17 | Release date: | 2005-11-15 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | The Cbf5-Nop10 complex is a molecular bracket that organizes box H/ACA RNPs. Nat.Struct.Mol.Biol., 12, 2005
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2AQA
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5J0M
| Ground state sampled during RDC restrained Replica-averaged Metadynamics (RAM) simulations of the HIV-1 TAR complexed with cyclic peptide mimetic of Tat | Descriptor: | Apical region (29-mer) of the HIV-1 TAR RNA element, Cyclic peptide mimetic of HIV-1 Tat | Authors: | Borkar, A.N, Bardaro Jr, M.F, Varani, G, Vendruscolo, M. | Deposit date: | 2016-03-28 | Release date: | 2016-06-08 | Last modified: | 2019-10-23 | Method: | SOLUTION NMR | Cite: | Structure of a low-population binding intermediate in protein-RNA recognition. Proc.Natl.Acad.Sci.USA, 113, 2016
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5J1O
| Excited state (Bound-like) sampled during RDC restrained Replica-averaged Metadynamics (RAM) simulations of the HIV-1 TAR complexed with cyclic peptide mimetic of Tat | Descriptor: | Apical region (29mer) of the HIV-1 TAR element, Cyclic peptide mimetic of Tat | Authors: | Borkar, A.N, Bardaro, M.F, Varani, G, Vendruscolo, M. | Deposit date: | 2016-03-29 | Release date: | 2016-06-08 | Last modified: | 2019-10-23 | Method: | SOLUTION NMR | Cite: | Structure of a low-population binding intermediate in protein-RNA recognition. Proc.Natl.Acad.Sci.USA, 113, 2016
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5J2W
| Intermediate state lying on the pathway of release of Tat from HIV-1 TAR. | Descriptor: | Apical region (29mer) of the HIV-1 TAR RNA element, Cyclic peptide mimetic of HIV-1 Tat | Authors: | Borkar, A.N, Bardaro Jr, M.F, Varani, G, Vendruscolo, M. | Deposit date: | 2016-03-30 | Release date: | 2016-06-08 | Last modified: | 2019-10-23 | Method: | SOLUTION NMR | Cite: | Structure of a low-population binding intermediate in protein-RNA recognition. Proc.Natl.Acad.Sci.USA, 113, 2016
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1QYS
| Crystal structure of Top7: A computationally designed protein with a novel fold | Descriptor: | TOP7 | Authors: | Kuhlman, B, Dantas, G, Ireton, G.C, Varani, G, Stoddard, B.L, Baker, D. | Deposit date: | 2003-09-11 | Release date: | 2003-11-25 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Design of a Novel Globular Protein Fold with Atomic-Level Accuracy Science, 302, 2003
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1Z31
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2A9X
| TAR RNA recognition by a cyclic peptidomimetic of Tat protein | Descriptor: | BIV TAR RNA, BIV-2 cyclic peptide | Authors: | Leeper, T.C, Athanassiou, Z, Dias, R.L, Robinson, J.A, Varani, G. | Deposit date: | 2005-07-12 | Release date: | 2005-11-01 | Last modified: | 2022-03-09 | Method: | SOLUTION NMR | Cite: | TAR RNA recognition by a cyclic peptidomimetic of Tat protein. Biochemistry, 44, 2005
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2APO
| Crystal Structure of the Methanococcus jannaschii Cbf5 Nop10 Complex | Descriptor: | POTASSIUM ION, Probable tRNA pseudouridine synthase B, Ribosome biogenesis protein Nop10, ... | Authors: | Hamma, T, Reichow, S.L, Varani, G, Ferre-D'Amare, A.R. | Deposit date: | 2005-08-16 | Release date: | 2005-11-15 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | The Cbf5-Nop10 complex is a molecular bracket that organizes box H/ACA RNPs. Nat.Struct.Mol.Biol., 12, 2005
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1DZ5
| The NMR structure of the 38KDa U1A protein-PIE RNA complex reveals the basis of cooperativity in regulation of polyadenylation by human U1A protein | Descriptor: | PIE, RNA (5'-R(*GP*AP*GP*AP*CP*AP*UP*UP*GP*CP*AP*CP*CP* CP*GP*GP*AP*GP*UP*CP*UP*C)-3'), U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A | Authors: | Varani, L, Gunderson, S.I, Mattaj, I.W, Kay, L.E, Neuhaus, D, Varani, G. | Deposit date: | 2000-02-16 | Release date: | 2000-03-29 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | The NMR Structure of the 38kDa U1A Protein-Pie RNA Complex Reveals the Basis of Cooperativity in Regulation of Polyadenylation by Human U1A Protein Nat.Struct.Biol., 7, 2000
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1EI2
| STRUCTURAL BASIS FOR RECOGNITION OF THE RNA MAJOR GROOVE IN THE TAU EXON 10 SPLICING REGULATORY ELEMENT BY AMINOGLYCOSIDE ANTIBIOTICS | Descriptor: | NEOMYCIN, TAU EXON 10 SRE RNA | Authors: | Varani, L, Spillantini, M.G, Goedert, M, Varani, G. | Deposit date: | 2000-02-23 | Release date: | 2000-03-06 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Structural basis for recognition of the RNA major groove in the tau exon 10 splicing regulatory element by aminoglycoside antibiotics. Nucleic Acids Res., 28, 2000
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6DZE
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6DZA
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6DZB
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1AUD
| U1A-UTRRNA, NMR, 31 STRUCTURES | Descriptor: | RNA 3UTR, U1A 102 | Authors: | Allain, F.H.-T, Gubser, C.C, Howe, P.W.A, Nagai, K, Neuhaus, D, Varani, G. | Deposit date: | 1997-08-22 | Release date: | 1998-02-25 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Structural basis of the RNA-binding specificity of human U1A protein. EMBO J., 16, 1997
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1IKD
| ACCEPTOR STEM, NMR, 30 STRUCTURES | Descriptor: | TRNA ALA ACCEPTOR STEM | Authors: | Ramos, A, Varani, G. | Deposit date: | 1996-11-15 | Release date: | 1997-04-01 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Structure of the acceptor stem of Escherichia coli tRNA Ala: role of the G3.U70 base pair in synthetase recognition. Nucleic Acids Res., 25, 1997
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1KP7
| Conserved RNA Structure within the HCV IRES eIF3 Binding Site | Descriptor: | Hepatitis C Virus Internal Ribosome Entry Site Fragment | Authors: | Gallego, J, Klinck, R, Collier, A.J, Cole, P.T, Harris, S.J, Harrison, G.P, Aboul-ela, F, Walker, S, Varani, G. | Deposit date: | 2001-12-29 | Release date: | 2002-04-10 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | A conserved RNA structure within the HCV IRES eIF3-binding site. Nat.Struct.Biol., 9, 2002
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1M5L
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5UZT
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5VO7
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5UZZ
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5T3Y
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1P1T
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1OQ0
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