Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5XZQ
DownloadVisualize
BU of 5xzq by Molmil
Hydroxynitrile lyase from Passiflora edulis (PeHNL)
Descriptor: Hydroxynitrile lyase
Authors:Motojima, F, Nuylert, A, Asano, Y.
Deposit date:2017-07-13
Release date:2017-11-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The crystal structure and catalytic mechanism of hydroxynitrile lyase from passion fruit, Passiflora edulis
FEBS J., 285, 2018
5YB7
DownloadVisualize
BU of 5yb7 by Molmil
L-Amino acid oxidase/monooxygenase from Pseudomonas sp. AIU 813 - L-ornithine complex
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, L-amino acid oxidase/monooxygenase, L-ornithine
Authors:Im, D, Matsui, D, Arakawa, T, Isobe, K, Asano, Y, Fushinobu, S.
Deposit date:2017-09-03
Release date:2018-02-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Ligand complex structures of l-amino acid oxidase/monooxygenase from
FEBS Open Bio, 8, 2018
5XZE
DownloadVisualize
BU of 5xze by Molmil
Mouse cGAS bound to the inhibitor RU332
Descriptor: (3R)-3-[1-(3H-1lambda~4~,3-benzothiazol-2-yl)-5-hydroxy-3-methyl-1H-pyrazol-4-yl]-2-benzofuran-1(3H)-one, Cyclic GMP-AMP synthase, DNA (5'-D(*AP*AP*AP*TP*TP*GP*CP*CP*GP*AP*AP*GP*AP*CP*G)-3'), ...
Authors:Vincent, J, Adura, C, Gao, P, Luz, A, Lama, L, Asano, Y, Okamoto, R, Imaeda, T, Aida, J, Rothamel, K, Gogakos, T, Steinberg, J, Reasoner, S, Aso, K, Tuschl, T, Patel, D.J, Glickman, J.F, Ascano, M.
Deposit date:2017-07-12
Release date:2017-10-11
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.177 Å)
Cite:Small molecule inhibition of cGAS reduces interferon expression in primary macrophages from autoimmune mice.
Nat Commun, 8, 2017
5XZT
DownloadVisualize
BU of 5xzt by Molmil
C-terminal peptide depleted mutant of hydroxynitrile lyase from Passiflora edulis (PeHNL)
Descriptor: HEXANE-1,6-DIOL, Hydroxynitrile lyase
Authors:Motojima, F, Nuylert, A, Asano, Y.
Deposit date:2017-07-13
Release date:2017-11-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The crystal structure and catalytic mechanism of hydroxynitrile lyase from passion fruit, Passiflora edulis
FEBS J., 285, 2018
5Y02
DownloadVisualize
BU of 5y02 by Molmil
C-terminal peptide depleted mutant of hydroxynitrile lyase from Passiflora edulis (PeHNL) bound with (R)-mandelonitrile
Descriptor: (2R)-hydroxy(phenyl)ethanenitrile, HEXANE-1,6-DIOL, Hydroxynitrile lyase, ...
Authors:Motojima, F, Nuylert, A, Asano, Y.
Deposit date:2017-07-14
Release date:2017-11-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The crystal structure and catalytic mechanism of hydroxynitrile lyase from passion fruit, Passiflora edulis
FEBS J., 285, 2018
5YB6
DownloadVisualize
BU of 5yb6 by Molmil
L-Amino acid oxidase/monooxygenase from Pseudomonas sp. AIU 813 - L-lysine complex
Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, FLAVIN-ADENINE DINUCLEOTIDE, L-amino acid oxidase/monooxygenase, ...
Authors:Im, D, Matsui, D, Arakawa, T, Isobe, K, Asano, Y, Fushinobu, S.
Deposit date:2017-09-03
Release date:2018-02-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Ligand complex structures of l-amino acid oxidase/monooxygenase from
FEBS Open Bio, 8, 2018
5XZG
DownloadVisualize
BU of 5xzg by Molmil
Mouse cGAS bound to the inhibitor RU521
Descriptor: 2-(4,5-dichloro-1H-benzimidazol-2-yl)-5-methyl-4-[(1R)-3-oxo-1,3-dihydro-2-benzofuran-1-yl]-1,2-dihydro-3H-pyrazol-3-one, Cyclic GMP-AMP synthase, DNA (5'-D(*AP*AP*AP*TP*TP*GP*CP*CP*GP*AP*AP*GP*AP*CP*G)-3'), ...
Authors:Vincent, J, Adura, C, Gao, P, Luz, A, Lama, L, Asano, Y, Okamoto, R, Imaeda, T, Aida, J, Rothamel, K, Gogakos, T, Steinberg, J, Reasoner, S, Aso, K, Tuschl, T, Patel, D.J, Glickman, J.F, Ascano, M.
Deposit date:2017-07-12
Release date:2017-10-11
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.828 Å)
Cite:Small molecule inhibition of cGAS reduces interferon expression in primary macrophages from autoimmune mice.
Nat Commun, 8, 2017
5YB8
DownloadVisualize
BU of 5yb8 by Molmil
L-Amino acid oxidase/monooxygenase from Pseudomonas sp. AIU 813 - L-arginine complex
Descriptor: ARGININE, FLAVIN-ADENINE DINUCLEOTIDE, L-amino acid oxidase/monooxygenase
Authors:Im, D, Matsui, D, Arakawa, T, Isobe, K, Asano, Y, Fushinobu, S.
Deposit date:2017-09-03
Release date:2018-02-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Ligand complex structures of l-amino acid oxidase/monooxygenase from
FEBS Open Bio, 8, 2018
1BG6
DownloadVisualize
BU of 1bg6 by Molmil
CRYSTAL STRUCTURE OF THE N-(1-D-CARBOXYLETHYL)-L-NORVALINE DEHYDROGENASE FROM ARTHROBACTER SP. STRAIN 1C
Descriptor: N-(1-D-CARBOXYLETHYL)-L-NORVALINE DEHYDROGENASE
Authors:Britton, K.L, Asano, Y, Rice, D.W.
Deposit date:1998-06-05
Release date:1999-01-13
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure and active site location of N-(1-D-carboxylethyl)-L-norvaline dehydrogenase.
Nat.Struct.Biol., 5, 1998
3RKS
DownloadVisualize
BU of 3rks by Molmil
Crystal Structure of the Manihot esculenta Hydroxynitrile Lyase (MeHNL) K176P mutant
Descriptor: GLYCEROL, Hydroxynitrilase
Authors:Cielo, C.B.C, Yamane, T, Asano, Y, Dadashipour, M, Suzuki, A, Mizushima, T, Komeda, H.
Deposit date:2011-04-18
Release date:2012-06-20
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystallographic Studies of Manihot esculenta hydroxynitrile lyase Lysine-to-Proline mutants
To be Published
1EOI
DownloadVisualize
BU of 1eoi by Molmil
CRYSTAL STRUCTURE OF ACID PHOSPHATASE FROM ESCHERICHIA BLATTAE COMPLEXED WITH THE TRANSITION STATE ANALOG MOLYBDATE
Descriptor: ACID PHOSPHATASE, MOLYBDATE ION
Authors:Ishikawa, K, Mihara, Y, Gondoh, K, Suzuki, E, Asano, Y.
Deposit date:2000-03-23
Release date:2001-03-23
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:X-ray structures of a novel acid phosphatase from Escherichia blattae and its complex with the transition-state analog molybdate.
EMBO J., 19, 2000
3A16
DownloadVisualize
BU of 3a16 by Molmil
Crystal Structure of Aldoxime Dehydratase (OxdRE) in Complex with Propionaldoxime
Descriptor: (1Z)-propanal oxime, Aldoxime dehydratase, MAGNESIUM ION, ...
Authors:Sawai, H, Sugimoto, H, Kato, Y, Asano, Y, Shiro, Y, Aono, S.
Deposit date:2009-03-26
Release date:2009-09-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:X-ray crystal structure of michaelis complex of aldoxime dehydratase
J.Biol.Chem., 284, 2009
3A18
DownloadVisualize
BU of 3a18 by Molmil
Crystal Structure of Aldoxime Dehydratase (OxdRE) in Complex with Butyraldoxime (soaked crystal)
Descriptor: (1Z)-butanal oxime, Aldoxime dehydratase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sawai, H, Sugimoto, H, Kato, Y, Asano, Y, Shiro, Y, Aono, S.
Deposit date:2009-03-26
Release date:2009-09-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray crystal structure of michaelis complex of aldoxime dehydratase
J.Biol.Chem., 284, 2009
3A17
DownloadVisualize
BU of 3a17 by Molmil
Crystal Structure of Aldoxime Dehydratase (OxdRE) in Complex with Butyraldoxime (Co-crystal)
Descriptor: (1Z)-butanal oxime, Aldoxime dehydratase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sawai, H, Sugimoto, H, Kato, Y, Asano, Y, Shiro, Y, Aono, S.
Deposit date:2009-03-26
Release date:2009-09-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:X-ray crystal structure of michaelis complex of aldoxime dehydratase
J.Biol.Chem., 284, 2009
3A15
DownloadVisualize
BU of 3a15 by Molmil
Crystal Structure of Substrate-Free Form of Aldoxime Dehydratase (OxdRE)
Descriptor: Aldoxime dehydratase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sawai, H, Sugimoto, H, Kato, Y, Asano, Y, Shiro, Y, Aono, S.
Deposit date:2009-03-26
Release date:2009-09-08
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:X-ray crystal structure of michaelis complex of aldoxime dehydratase
J.Biol.Chem., 284, 2009
3RED
DownloadVisualize
BU of 3red by Molmil
3.0 A structure of the Prunus mume hydroxynitrile lyase isozyme-1
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Hydroxynitrile lyase
Authors:Cielo, C.B.C, Yamane, T, Asano, Y, Watanabe, N, Suzuki, A, Fukuta, Y.
Deposit date:2011-04-04
Release date:2012-06-20
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.03 Å)
Cite:Crystal Structure of a native FAD-dependent Hydroxynitrile Lyase derived from the Japanese apricot, Prunus mume
To be Published
5XZB
DownloadVisualize
BU of 5xzb by Molmil
Mouse cGAS bound to the inhibitor RU365
Descriptor: (3R)-3-[1-(1H-benzimidazol-2-yl)-5-hydroxy-3-methyl-1H-pyrazol-4-yl]-2-benzofuran-1(3H)-one, Cyclic GMP-AMP synthase, DNA (5'-D(*AP*AP*AP*TP*TP*GP*CP*CP*GP*AP*AP*GP*AP*CP*G)-3'), ...
Authors:Vincent, J, Adura, C, Gao, P, Luz, A, Lama, L, Asano, Y, Okamoto, R, Imaeda, T, Aida, J, Rothamel, K, Gogakos, T, Steinberg, J, Reasoner, S, Aso, K, Tuschl, T, Patel, D.J, Glickman, J.F, Ascano, M.
Deposit date:2017-07-12
Release date:2017-08-09
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Small molecule inhibition of cGAS reduces interferon expression in primary macrophages from autoimmune mice.
Nat Commun, 8, 2017
5ZBD
DownloadVisualize
BU of 5zbd by Molmil
Crystal structure of tryptophan oxidase (C395A mutant) from Chromobacterium violaceum
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Flavin-dependent L-tryptophan oxidase VioA, TRYPTOPHAN
Authors:Yamaguchi, H, Tatsumi, M, Takahashi, K, Tagami, U, Sugiki, M, Kashiwagi, T, Okazaki, S, Mizukoshi, T, Asano, Y.
Deposit date:2018-02-11
Release date:2018-12-19
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Protein engineering for improving the thermostability of tryptophan oxidase and insights from structural analysis.
J. Biochem., 164, 2018
5ZBC
DownloadVisualize
BU of 5zbc by Molmil
Crystal structure of Se-Met tryptophan oxidase (C395A mutant) from Chromobacterium violaceum
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Flavin-dependent L-tryptophan oxidase VioA
Authors:Yamaguchi, H, Tatsumi, M, Takahashi, K, Tagami, U, Sugiki, M, Kashiwagi, T, Okazaki, S, Mizukoshi, T, Asano, Y.
Deposit date:2018-02-11
Release date:2018-12-19
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Protein engineering for improving the thermostability of tryptophan oxidase and insights from structural analysis.
J. Biochem., 164, 2018
5WX2
DownloadVisualize
BU of 5wx2 by Molmil
Crystal structure of porcine kidney D-amino acid oxidase mutant (I230A/R283G)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Motojima, F, Yasukawa, K, Ohno, A, Asano, Y.
Deposit date:2017-01-06
Release date:2018-01-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3 Å)
Cite:Tailoring D-amino acid oxidase from the pid kidney to R-stereoselective amine oxidase and its use in the deracemization of 4-chlorobenzhydrylamine
To Be Published
5WWV
DownloadVisualize
BU of 5wwv by Molmil
Crystal structure of porcine kidney D-amino acid oxidase mutant (I230A/R283G)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, (S)-(4-chlorophenyl)-phenyl-methanamine, D-amino-acid oxidase, ...
Authors:Motojima, F, Yasukawa, K, Ohno, A, Asano, Y.
Deposit date:2017-01-05
Release date:2018-01-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Tailoring D-amino acid oxidase from the pid kidney to R-stereoselective amine oxidase and its use in the deracemization of 4-chlorobenzhydrylamine
To Be Published
4YJD
DownloadVisualize
BU of 4yjd by Molmil
Crystal structure of DAAO(Y228L/R283G) variant (apo form)
Descriptor: D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION
Authors:Nakano, S, Yasukawa, K, Kawahara, N, Ishitsubo, E, Tokiwa, H, Asano, Y.
Deposit date:2015-03-03
Release date:2016-04-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of DAAO variant
To Be Published
4YJH
DownloadVisualize
BU of 4yjh by Molmil
Crystal structure of DAAO(Y228L/R283G) variant (R-2-phenylpyrrolidine binding form)
Descriptor: (2R)-2-phenylpyrrolidine, D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Nakano, S, Yasukawa, K, Kawahara, N, Ishitsubo, E, Tokiwa, H, Asano, Y.
Deposit date:2015-03-03
Release date:2016-04-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of DAAO variant
To Be Published
4YJG
DownloadVisualize
BU of 4yjg by Molmil
Crystal structure of DAAO(Y228L/R283G) variant (R-3-amino 1-phenylbutane binding form)
Descriptor: (2R)-4-phenylbutan-2-amine, D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Nakano, S, Yasukawa, K, Kawahara, N, Ishitsubo, E, Tokiwa, H, Asano, Y.
Deposit date:2015-03-03
Release date:2016-04-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of DAAO variant
To Be Published
4YJF
DownloadVisualize
BU of 4yjf by Molmil
Crystal structure of DAAO(Y228L/R283G) variant (S-methylbenzylamine binding form)
Descriptor: (1S)-1-phenylethanamine, D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Nakano, S, Yasukawa, K, Kawahara, N, Ishitsubo, E, Tokiwa, H, Asano, Y.
Deposit date:2015-03-03
Release date:2016-04-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of DAAO variant
To Be Published

221371

數據於2024-06-19公開中

PDB statisticsPDBj update infoContact PDBjnumon