4WLC
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![BU of 4wlc by Molmil](/molmil-images/mine/4wlc) | Structure of dextran glucosidase with glucose | Descriptor: | CALCIUM ION, GLYCEROL, Glucan 1,6-alpha-glucosidase, ... | Authors: | Kobayashi, M, Kato, K, Yao, M. | Deposit date: | 2014-10-07 | Release date: | 2015-08-26 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.402 Å) | Cite: | Structural insights into the catalytic reaction that is involved in the reorientation of Trp238 at the substrate-binding site in GH13 dextran glucosidase Febs Lett., 589, 2015
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4XB3
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![BU of 4xb3 by Molmil](/molmil-images/mine/4xb3) | Structure of dextran glucosidase | Descriptor: | CALCIUM ION, Glucan 1,6-alpha-glucosidase, HEXAETHYLENE GLYCOL | Authors: | Kobayashi, M, Kato, K, Yao, M. | Deposit date: | 2014-12-16 | Release date: | 2015-08-26 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.093 Å) | Cite: | Structural insights into the catalytic reaction that is involved in the reorientation of Trp238 at the substrate-binding site in GH13 dextran glucosidase Febs Lett., 589, 2015
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3JW6
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![BU of 3jw6 by Molmil](/molmil-images/mine/3jw6) | |
3JVB
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![BU of 3jvb by Molmil](/molmil-images/mine/3jvb) | |
6KIP
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![BU of 6kip by Molmil](/molmil-images/mine/6kip) | |
5E1Q
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![BU of 5e1q by Molmil](/molmil-images/mine/5e1q) | Mutant (D415G) GH97 alpha-galactosidase in complex with Gal-Lac | Descriptor: | CALCIUM ION, GLYCEROL, Retaining alpha-galactosidase, ... | Authors: | Matsunaga, K, Yamashita, K, Tagami, T, Yao, M, Okuyama, M, Kimura, A. | Deposit date: | 2015-09-30 | Release date: | 2016-10-05 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.943 Å) | Cite: | Efficient synthesis of alpha-galactosyl oligosaccharides using a mutant Bacteroides thetaiotaomicron retaining alpha-galactosidase (BtGH97b). FEBS J., 284, 2017
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3A24
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![BU of 3a24 by Molmil](/molmil-images/mine/3a24) | Crystal structure of BT1871 retaining glycosidase | Descriptor: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, alpha-galactosidase | Authors: | Okuyama, M, Kitamura, M, Hondoh, H, Tanaka, I, Yao, M. | Deposit date: | 2009-04-28 | Release date: | 2009-10-06 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Catalytic mechanism of retaining alpha-galactosidase belonging to glycoside hydrolase family 97. J.Mol.Biol., 392, 2009
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4YFE
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![BU of 4yfe by Molmil](/molmil-images/mine/4yfe) | Crystal structure of PTP delta Fn1-Fn2 | Descriptor: | Receptor-type tyrosine-protein phosphatase delta | Authors: | Yamagata, A, Fukai, S. | Deposit date: | 2015-02-25 | Release date: | 2015-05-06 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.972 Å) | Cite: | Mechanisms of splicing-dependent trans-synaptic adhesion by PTP delta-IL1RAPL1/IL-1RAcP for synaptic differentiation. Nat Commun, 6, 2015
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4YH6
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![BU of 4yh6 by Molmil](/molmil-images/mine/4yh6) | Crystal structure of IL1RAPL1 ectodomain | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Interleukin-1 receptor accessory protein-like 1, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... | Authors: | Yamagata, A, Fukai, S. | Deposit date: | 2015-02-27 | Release date: | 2015-05-06 | Last modified: | 2020-07-29 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | Mechanisms of splicing-dependent trans-synaptic adhesion by PTP delta-IL1RAPL1/IL-1RAcP for synaptic differentiation. Nat Commun, 6, 2015
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4YFG
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![BU of 4yfg by Molmil](/molmil-images/mine/4yfg) | Crystal structure of PTP delta meA3/meB minus variant Ig1-Fn1 | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Receptor-type tyrosine-protein phosphatase delta | Authors: | Yamagata, A, Fukai, S. | Deposit date: | 2015-02-25 | Release date: | 2015-05-06 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3.491 Å) | Cite: | Mechanisms of splicing-dependent trans-synaptic adhesion by PTP delta-IL1RAPL1/IL-1RAcP for synaptic differentiation. Nat Commun, 6, 2015
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4YFD
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![BU of 4yfd by Molmil](/molmil-images/mine/4yfd) | Crystal structure PTP delta Ig1-Fn2 in complex with IL-1RAcP | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Interleukin-1 receptor accessory protein, Receptor-type tyrosine-protein phosphatase delta | Authors: | Yamagata, A, Fukai, S. | Deposit date: | 2015-02-25 | Release date: | 2015-05-06 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3.253 Å) | Cite: | Mechanisms of splicing-dependent trans-synaptic adhesion by PTP delta-IL1RAPL1/IL-1RAcP for synaptic differentiation. Nat Commun, 6, 2015
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4YH7
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![BU of 4yh7 by Molmil](/molmil-images/mine/4yh7) | Crystal structure of PTPdelta ectodomain in complex with IL1RAPL1 | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Interleukin-1 receptor accessory protein-like 1, ... | Authors: | Yamagata, A, Fukai, S. | Deposit date: | 2015-02-27 | Release date: | 2015-05-06 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (4.4 Å) | Cite: | Mechanisms of splicing-dependent trans-synaptic adhesion by PTP delta-IL1RAPL1/IL-1RAcP for synaptic differentiation. Nat Commun, 6, 2015
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7F3A
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![BU of 7f3a by Molmil](/molmil-images/mine/7f3a) | Arabidopsis thaliana GH1 beta-glucosidase AtBGlu42 | Descriptor: | Beta-glucosidase 42, GLYCEROL | Authors: | Horikoshi, S, Saburi, W, Yu, J, Yao, M. | Deposit date: | 2021-06-16 | Release date: | 2022-03-16 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Substrate specificity of glycoside hydrolase family 1 beta-glucosidase AtBGlu42 from Arabidopsis thaliana and its molecular mechanism. Biosci.Biotechnol.Biochem., 86, 2022
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2D4C
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![BU of 2d4c by Molmil](/molmil-images/mine/2d4c) | Crystal structure of the endophilin BAR domain mutant | Descriptor: | CALCIUM ION, SH3-containing GRB2-like protein 2 | Authors: | Masuda, M, Takeda, S. | Deposit date: | 2005-10-13 | Release date: | 2006-07-11 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Endophilin BAR domain drives membrane curvature by two newly identified structure-based mechanisms Embo J., 25, 2006
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2D73
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![BU of 2d73 by Molmil](/molmil-images/mine/2d73) | Crystal Structure Analysis of SusB | Descriptor: | CALCIUM ION, alpha-glucosidase SusB | Authors: | Kitamura, M, Yao, M. | Deposit date: | 2005-11-15 | Release date: | 2007-02-27 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Structural and functional analysis of a glycoside hydrolase family 97 enzyme from Bacteroides thetaiotaomicron. J.Biol.Chem., 283, 2008
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2E3X
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![BU of 2e3x by Molmil](/molmil-images/mine/2e3x) | Crystal structure of Russell's viper venom metalloproteinase | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 3-(N-HYDROXYCARBOXAMIDO)-2-ISOBUTYLPROPANOYL-TRP-METHYLAMIDE, ... | Authors: | Igarashi, T, Takeda, S. | Deposit date: | 2006-11-30 | Release date: | 2007-12-11 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.91 Å) | Cite: | Crystal structure of RVV-X: an example of evolutionary gain of specificity by ADAM proteinases. Febs Lett., 581, 2007
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2CXA
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![BU of 2cxa by Molmil](/molmil-images/mine/2cxa) | Crystal structure of Leucyl/phenylalanyl-tRNA protein transferase from Escherichia coli | Descriptor: | Leucyl/phenylalanyl-tRNA-protein transferase | Authors: | Kato-Murayama, M, Bessho, Y, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2005-06-28 | Release date: | 2005-12-28 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | The crystal structure of leucyl/phenylalanyl-tRNA-protein transferase from Escherichia coli Protein Sci., 16, 2007
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3WKH
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![BU of 3wkh by Molmil](/molmil-images/mine/3wkh) | Crystal structure of cellobiose 2-epimerase in complex with epilactose | Descriptor: | CHLORIDE ION, Cellobiose 2-epimerase, PHOSPHATE ION, ... | Authors: | Fujiwara, T, Saburi, W, Tanaka, I, Yao, M. | Deposit date: | 2013-10-21 | Release date: | 2013-12-25 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.644 Å) | Cite: | Structural Insights into the Epimerization of beta-1,4-Linked Oligosaccharides Catalyzed by Cellobiose 2-Epimerase, the Sole Enzyme Epimerizing Non-anomeric Hydroxyl Groups of Unmodified Sugars J.Biol.Chem., 289, 2014
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3WKG
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![BU of 3wkg by Molmil](/molmil-images/mine/3wkg) | Crystal structure of cellobiose 2-epimerase in complex with glucosylmannose | Descriptor: | CHLORIDE ION, Cellobiose 2-epimerase, PHOSPHATE ION, ... | Authors: | Fujiwara, T, Saburi, W, Tanaka, I, Yao, M. | Deposit date: | 2013-10-21 | Release date: | 2013-12-25 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.47 Å) | Cite: | Structural Insights into the Epimerization of beta-1,4-Linked Oligosaccharides Catalyzed by Cellobiose 2-Epimerase, the Sole Enzyme Epimerizing Non-anomeric Hydroxyl Groups of Unmodified Sugars J.Biol.Chem., 289, 2014
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3WKI
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![BU of 3wki by Molmil](/molmil-images/mine/3wki) | Crystal structure of cellobiose 2-epimerase in complex with cellobiitol | Descriptor: | CHLORIDE ION, Cellobiose 2-epimerase, PHOSPHATE ION, ... | Authors: | Fujiwara, T, Saburi, W, Tanaka, I, Yao, M. | Deposit date: | 2013-10-21 | Release date: | 2013-12-25 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.191 Å) | Cite: | Structural Insights into the Epimerization of beta-1,4-Linked Oligosaccharides Catalyzed by Cellobiose 2-Epimerase, the Sole Enzyme Epimerizing Non-anomeric Hydroxyl Groups of Unmodified Sugars J.Biol.Chem., 289, 2014
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3WKF
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![BU of 3wkf by Molmil](/molmil-images/mine/3wkf) | Crystal structure of cellobiose 2-epimerase | Descriptor: | CHLORIDE ION, Cellobiose 2-epimerase, PHOSPHATE ION | Authors: | Fujiwara, T, Saburi, W, Tanaka, I, Yao, M. | Deposit date: | 2013-10-21 | Release date: | 2013-12-25 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.743 Å) | Cite: | Structural Insights into the Epimerization of beta-1,4-Linked Oligosaccharides Catalyzed by Cellobiose 2-Epimerase, the Sole Enzyme Epimerizing Non-anomeric Hydroxyl Groups of Unmodified Sugars J.Biol.Chem., 289, 2014
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3WY2
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![BU of 3wy2 by Molmil](/molmil-images/mine/3wy2) | Crystal structure of alpha-glucosidase in complex with glucose | Descriptor: | Alpha-glucosidase, GLYCEROL, MAGNESIUM ION, ... | Authors: | Shen, X, Gai, Z, Kato, K, Yao, M. | Deposit date: | 2014-08-18 | Release date: | 2015-06-10 | Last modified: | 2020-07-29 | Method: | X-RAY DIFFRACTION (1.471 Å) | Cite: | Structural analysis of the alpha-glucosidase HaG provides new insights into substrate specificity and catalytic mechanism Acta Crystallogr. D Biol. Crystallogr., 71, 2015
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3WY1
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![BU of 3wy1 by Molmil](/molmil-images/mine/3wy1) | Crystal structure of alpha-glucosidase | Descriptor: | (3R,5R,7R)-octane-1,3,5,7-tetracarboxylic acid, Alpha-glucosidase, GLYCEROL, ... | Authors: | Shen, X, Gai, Z, Kato, K, Yao, M. | Deposit date: | 2014-08-18 | Release date: | 2015-06-10 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | Structural analysis of the alpha-glucosidase HaG provides new insights into substrate specificity and catalytic mechanism Acta Crystallogr. D Biol. Crystallogr., 71, 2015
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3WY3
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![BU of 3wy3 by Molmil](/molmil-images/mine/3wy3) | Crystal structure of alpha-glucosidase mutant D202N in complex with glucose and glycerol | Descriptor: | Alpha-glucosidase, GLYCEROL, MAGNESIUM ION, ... | Authors: | Shen, X, Gai, Z, Kato, K, Yao, M. | Deposit date: | 2014-08-18 | Release date: | 2015-06-10 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | Structural analysis of the alpha-glucosidase HaG provides new insights into substrate specificity and catalytic mechanism Acta Crystallogr. D Biol. Crystallogr., 71, 2015
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3WY4
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![BU of 3wy4 by Molmil](/molmil-images/mine/3wy4) | Crystal structure of alpha-glucosidase mutant E271Q in complex with maltose | Descriptor: | Alpha-glucosidase, GLYCEROL, MAGNESIUM ION, ... | Authors: | Shen, X, Gai, Z, Kato, K, Yao, M. | Deposit date: | 2014-08-18 | Release date: | 2015-06-10 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Structural analysis of the alpha-glucosidase HaG provides new insights into substrate specificity and catalytic mechanism Acta Crystallogr. D Biol. Crystallogr., 71, 2015
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