1WY6
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![BU of 1wy6 by Molmil](/molmil-images/mine/1wy6) | Crystal Structure of Hypothetical Protein [ST1625p] from Hyperthermophilic Archaeon Sulfolobus tokodaii | Descriptor: | hypothetical protein ST1625 | Authors: | Yoneda, K, Sakuraba, H, Tsuge, H, Katunuma, N, Kuramitsu, S, Kawabata, T, Ohshima, T. | Deposit date: | 2005-02-07 | Release date: | 2005-02-15 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | The first crystal structure of an archaeal helical repeat protein. Acta Crystallogr.,Sect.F, 61, 2005
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7F76
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8HMO
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![BU of 8hmo by Molmil](/molmil-images/mine/8hmo) | |
8HMN
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2DC1
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![BU of 2dc1 by Molmil](/molmil-images/mine/2dc1) | Crystal Structure Of L-Aspartate Dehydrogenase From Hyperthermophilic Archaeon Archaeoglobus fulgidus | Descriptor: | CITRIC ACID, L-aspartate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE | Authors: | Yoneda, K, Sakuraba, H, Tsuge, H, Ohshima, T. | Deposit date: | 2005-12-19 | Release date: | 2006-12-26 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal structure of archaeal highly thermostable L-aspartate dehydrogenase/NAD/citrate ternary complex. Febs J., 274, 2007
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5XVH
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![BU of 5xvh by Molmil](/molmil-images/mine/5xvh) | Crystal structure of the NADP+ and tartrate-bound complex of L-serine 3-dehydrogenase from the hyperthermophilic archaeon Pyrobaculum calidifontis | Descriptor: | 6-phosphogluconate dehydrogenase, NAD-binding protein, ACETIC ACID, ... | Authors: | Yoneda, K, Sakuraba, H, Ohshima, T. | Deposit date: | 2017-06-28 | Release date: | 2018-02-07 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.57 Å) | Cite: | Crystal structure of the NADP+and tartrate-bound complex of L-serine 3-dehydrogenase from the hyperthermophilic archaeon Pyrobaculum calidifontis. Extremophiles, 22, 2018
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6IQM
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![BU of 6iqm by Molmil](/molmil-images/mine/6iqm) | Crystal Structure of Cell Surface Glyceraldehyde-3-Phosphate Dehydrogenase Complexed with NAD+ from Lactobacillus plantarum | Descriptor: | 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Glyceraldehyde-3-phosphate dehydrogenase, ... | Authors: | Yoneda, K, Kinoshita, H. | Deposit date: | 2018-11-08 | Release date: | 2018-11-21 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.85 Å) | Cite: | Crystal Structure of Cell Surface Glyceraldehyde-3-Phosphate Dehydrogenase from Lactobacillus plantarum: Insight into the Mercury Binding Mechanism Milk Sci, 68, 2019
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6IQV
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![BU of 6iqv by Molmil](/molmil-images/mine/6iqv) | Crystal Structure of Cell Surface Glyceraldehyde-3-Phosphate Dehydrogenase Complexed with Hg2+ from Lactobacillus plantarum | Descriptor: | 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Glyceraldehyde-3-phosphate dehydrogenase, ... | Authors: | Yoneda, K, Kinoshita, H. | Deposit date: | 2018-11-09 | Release date: | 2018-11-21 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.13 Å) | Cite: | Crystal Structure of Cell Surface Glyceraldehyde-3-Phosphate Dehydrogenase from Lactobacillus plantarum: Insight into the Mercury Binding Mechanism Milk Sci, 68, 2019
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6JYG
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![BU of 6jyg by Molmil](/molmil-images/mine/6jyg) | Crystal Structure of L-threonine dehydrogenase from Phytophthora infestans | Descriptor: | 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, CITRATE ANION, L-threonine 3-dehydrogenase, ... | Authors: | Yoneda, K, Sakuraba, H, Ohshima, T. | Deposit date: | 2019-04-26 | Release date: | 2020-04-01 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.31 Å) | Cite: | Catalytic properties and crystal structure of UDP-galactose 4-epimerase-like l-threonine 3-dehydrogenase from Phytophthora infestans. Enzyme.Microb.Technol., 140, 2020
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6JXN
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![BU of 6jxn by Molmil](/molmil-images/mine/6jxn) | Crystal Structure of Indigo reductase from Bacillus smithii type strain DSM 4216 | Descriptor: | 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, FLAVIN MONONUCLEOTIDE, ... | Authors: | Yoneda, K, Sakuraba, H, Ohshima, T. | Deposit date: | 2019-04-24 | Release date: | 2020-04-01 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.97 Å) | Cite: | Structural and biochemical characterization of an extremely thermostable FMN-dependent NADH-indigo reductase from Bacillus smithii. Int.J.Biol.Macromol., 164, 2020
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6JXS
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![BU of 6jxs by Molmil](/molmil-images/mine/6jxs) | Crystal Structure of Indigo reductase (Y151F) from Bacillus smithii type strain DSM 4216 | Descriptor: | 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, FLAVIN MONONUCLEOTIDE, FMN-dependent NADH-azoreductase | Authors: | Yoneda, K, Sakuraba, H, Ohshima, T. | Deposit date: | 2019-04-24 | Release date: | 2020-04-01 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | Structural and biochemical characterization of an extremely thermostable FMN-dependent NADH-indigo reductase from Bacillus smithii. Int.J.Biol.Macromol., 164, 2020
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3W6Z
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3W6U
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3WS7
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![BU of 3ws7 by Molmil](/molmil-images/mine/3ws7) | The 1.18 A resolution structure of L-serine 3-dehydrogenase complexed with NADP+ and sulfate ion from the hyperthermophilic archaeon Pyrobaculum calidifontis | Descriptor: | 6-phosphogluconate dehydrogenase, NAD-binding protein, ACETIC ACID, ... | Authors: | Yoneda, K, Sakuraba, H, Ohshima, T. | Deposit date: | 2014-03-04 | Release date: | 2015-03-04 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.18 Å) | Cite: | Crystal structure of the NADP+and tartrate-bound complex of L-serine 3-dehydrogenase from the hyperthermophilic archaeon Pyrobaculum calidifontis. Extremophiles, 22, 2018
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2YY7
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![BU of 2yy7 by Molmil](/molmil-images/mine/2yy7) | Crystal structure of thermolabile L-threonine dehydrogenase from Flavobacterium frigidimaris KUC-1 | Descriptor: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, GLYCEROL, ... | Authors: | Yoneda, K, Sakuraba, H, Oikawa, T, Muraoka, I, Ohshima, T. | Deposit date: | 2007-04-27 | Release date: | 2008-04-29 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.061 Å) | Cite: | Crystal structure of UDP-galactose 4-epimerase-like L-threonine dehydrogenase belonging to the intermediate short-chain dehydrogenase-reductase superfamily Febs J., 277, 2010
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2YVS
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3A9W
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![BU of 3a9w by Molmil](/molmil-images/mine/3a9w) | Crystal structure of L-Threonine bound L-Threonine dehydrogenase (Y137F) from Hyperthermophilic Archaeon Thermoplasma volcanium | Descriptor: | (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, NDP-sugar epimerase, ... | Authors: | Yoneda, K, Sakuraba, H, Ohshima, T. | Deposit date: | 2009-11-07 | Release date: | 2010-11-10 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.85 Å) | Cite: | Crystal Structure of Binary and Ternary Complexes of Archaeal UDP-galactose 4-Epimerase-like L-Threonine Dehydrogenase from Thermoplasma volcanium. J.Biol.Chem., 287, 2012
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3A4V
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![BU of 3a4v by Molmil](/molmil-images/mine/3a4v) | Crystal structure of pyruvate bound L-Threonine dehydrogenase from Hyperthermophilic Archaeon Thermoplasma volcanium | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, NDP-sugar epimerase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... | Authors: | Yoneda, K, Sakuraba, H, Ohshima, T. | Deposit date: | 2009-07-20 | Release date: | 2010-07-28 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (1.78 Å) | Cite: | Crystal Structure of Binary and Ternary Complexes of Archaeal UDP-galactose 4-Epimerase-like L-Threonine Dehydrogenase from Thermoplasma volcanium. J.Biol.Chem., 287, 2012
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3AJR
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![BU of 3ajr by Molmil](/molmil-images/mine/3ajr) | Crystal structure of L-3-Hydroxynorvaline bound L-Threonine dehydrogenase (Y137F) from Hyperthermophilic Archaeon Thermoplasma volcanium | Descriptor: | (3R)-3-hydroxy-L-norvaline, (4S)-2-METHYL-2,4-PENTANEDIOL, NDP-sugar epimerase, ... | Authors: | Yoneda, K, Sakuraba, H, Ohshima, T. | Deposit date: | 2010-06-14 | Release date: | 2011-06-15 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.77 Å) | Cite: | Crystal Structure of Binary and Ternary Complexes of Archaeal UDP-galactose 4-Epimerase-like L-Threonine Dehydrogenase from Thermoplasma volcanium. J.Biol.Chem., 287, 2012
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3ABI
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![BU of 3abi by Molmil](/molmil-images/mine/3abi) | Crystal Structure of L-Lysine Dehydrogenase from Hyperthermophilic Archaeon Pyrococcus horikoshii | Descriptor: | NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Putative uncharacterized protein PH1688, SULFATE ION | Authors: | Yoneda, K, Sakuraba, H, Fukuda, J, Ohshima, T. | Deposit date: | 2009-12-14 | Release date: | 2009-12-29 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.44 Å) | Cite: | First crystal structure of L-lysine 6-dehydrogenase as an NAD-dependent amine dehydrogenase. J.Biol.Chem., 285, 2010
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3AYQ
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![BU of 3ayq by Molmil](/molmil-images/mine/3ayq) | Crystal structure of inhibitor bound lysozyme from Meretrix lusoria | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-[(5S,6R)-5-hydroxy-6-(hydroxymethyl)-2-oxo-5,6-dihydro-2H-pyran-3-yl]acetamide, Lysozyme | Authors: | Yoneda, K, Kuwano, Y, Usui, T, Ogata, M, Suzuki, A, Araki, T. | Deposit date: | 2011-05-13 | Release date: | 2012-05-23 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.77 Å) | Cite: | Crystal structure of inhibitor bound lysozyme from Meretrix lusoria To be Published
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3A1N
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5B1Y
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![BU of 5b1y by Molmil](/molmil-images/mine/5b1y) | Crystal structure of NADPH bound carbonyl reductase from Aeropyrum pernix | Descriptor: | 3-oxoacyl-[acyl-carrier-protein] reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | Authors: | Yoneda, K, Sakuraba, H, Fukuda, Y, Araki, T, Ohshima, T. | Deposit date: | 2015-12-22 | Release date: | 2016-06-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.09 Å) | Cite: | Catalytic properties and crystal structure of thermostable NAD(P)H-dependent carbonyl reductase from the hyperthermophilic archaeon Aeropyrum pernix K1. Enzyme.Microb.Technol., 91, 2016
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2E5V
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![BU of 2e5v by Molmil](/molmil-images/mine/2e5v) | Crystal structure of L-Aspartate Oxidase from hyperthermophilic archaeon Sulfolobus tokodaii | Descriptor: | CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, L-aspartate oxidase | Authors: | Yoneda, K, Sakuraba, H, Asai, I, Tsuge, H, Katunuma, N, Ohshima, T. | Deposit date: | 2006-12-25 | Release date: | 2008-01-01 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.09 Å) | Cite: | Structure of l-aspartate oxidase from the hyperthermophilic archaeon Sulfolobus tokodaii Biochim.Biophys.Acta, 1784, 2008
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3WXB
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![BU of 3wxb by Molmil](/molmil-images/mine/3wxb) | Crystal structure of NADPH bound carbonyl reductase from chicken fatty liver | Descriptor: | 1,2-ETHANEDIOL, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Uncharacterized protein | Authors: | Yoneda, K, Sakuraba, H, Fukuda, Y, Sone, T, Araki, T, Ohshima, T. | Deposit date: | 2014-07-29 | Release date: | 2015-07-29 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.98 Å) | Cite: | A novel NAD(P)H-dependent carbonyl reductase specifically expressed in the thyroidectomized chicken fatty liver: catalytic properties and crystal structure. Febs J., 282, 2015
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