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3BRW
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BU of 3brw by Molmil
Structure of the Rap-RapGAP complex
Descriptor: BERYLLIUM TRIFLUORIDE ION, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Scrima, A, Thomas, C, Deaconescu, D, Wittinghofer, A.
Deposit date:2007-12-21
Release date:2008-03-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:The Rap-RapGAP complex: GTP hydrolysis without catalytic glutamine and arginine residues
Embo J., 27, 2008
1XZP
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BU of 1xzp by Molmil
Structure of the GTP-binding protein TrmE from Thermotoga maritima
Descriptor: Probable tRNA modification GTPase trmE, SULFATE ION
Authors:Scrima, A, Vetter, I.R, Armengod, M.E, Wittinghofer, A.
Deposit date:2004-11-12
Release date:2005-01-04
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The structure of the TrmE GTP-binding protein and its implications for tRNA modification
Embo J., 24, 2005
1XZQ
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BU of 1xzq by Molmil
Structure of the GTP-binding protein TrmE from Thermotoga maritima complexed with 5-formyl-THF
Descriptor: N-{[4-({[(6R)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]carbonyl}-L-glutamic acid, Probable tRNA modification GTPase trmE
Authors:Scrima, A, Vetter, I.R, Armengod, M.E, Wittinghofer, A.
Deposit date:2004-11-12
Release date:2005-01-04
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The structure of the TrmE GTP-binding protein and its implications for tRNA modification
Embo J., 24, 2005
3EI2
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BU of 3ei2 by Molmil
Structure of hsDDB1-drDDB2 bound to a 16 bp abasic site containing DNA-duplex
Descriptor: 5'-D(*DAP*DAP*DAP*DTP*DGP*DAP*DAP*DTP*(3DR)P*DAP*DAP*DGP*DCP*DAP*DGP*DG)-3', 5'-D(*DCP*DCP*DTP*DGP*DCP*DTP*DTP*DTP*DAP*DTP*DTP*DCP*DAP*DTP*DTP*DT)-3', DNA damage-binding protein 1, ...
Authors:Scrima, A, Thoma, N.H.
Deposit date:2008-09-15
Release date:2009-01-20
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complex.
Cell(Cambridge,Mass.), 135, 2008
3EI4
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BU of 3ei4 by Molmil
Structure of the hsDDB1-hsDDB2 complex
Descriptor: DNA damage-binding protein 1, DNA damage-binding protein 2
Authors:Scrima, A, Pavletich, N.P, Thoma, N.H.
Deposit date:2008-09-15
Release date:2009-01-20
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complex.
Cell(Cambridge,Mass.), 135, 2008
3EI3
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BU of 3ei3 by Molmil
Structure of the hsDDB1-drDDB2 complex
Descriptor: DNA damage-binding protein 1, DNA damage-binding protein 2, TETRAETHYLENE GLYCOL
Authors:Scrima, A, Thoma, N.H.
Deposit date:2008-09-15
Release date:2009-01-20
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complex.
Cell(Cambridge,Mass.), 135, 2008
3EI1
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BU of 3ei1 by Molmil
Structure of hsDDB1-drDDB2 bound to a 14 bp 6-4 photoproduct containing DNA-duplex
Descriptor: 5'-D(*DAP*DCP*DGP*DCP*DGP*DAP*(64T)P*(5PY)P*DGP*DCP*DGP*DCP*DCP*DC)-3', 5'-D(*DTP*DGP*DGP*DGP*DCP*DGP*DCP*DAP*DAP*DTP*DCP*DGP*DCP*DG)-3', DNA damage-binding protein 1, ...
Authors:Scrima, A, Thoma, N.H.
Deposit date:2008-09-15
Release date:2009-01-20
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis of UV DNA-damage recognition by the DDB1-DDB2 complex.
Cell(Cambridge,Mass.), 135, 2008
2GJA
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BU of 2gja by Molmil
Structure of the MnmE G-domain in complex with GDP*AlF4-, Mg2+ and NH4+
Descriptor: AMMONIUM ION, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Scrima, A, Wittinghofer, A.
Deposit date:2006-03-30
Release date:2006-07-04
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Dimerisation-dependent GTPase reaction of MnmE: how potassium acts as GTPase-activating element.
Embo J., 25, 2006
2GJ9
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BU of 2gj9 by Molmil
Structure of the MnmE G-domain in complex with GDP*AlF4-, Mg2+ and Rb+
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, RUBIDIUM ION, ...
Authors:Scrima, A, Wittinghofer, A.
Deposit date:2006-03-30
Release date:2006-07-04
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Dimerisation-dependent GTPase reaction of MnmE: how potassium acts as GTPase-activating element.
Embo J., 25, 2006
2GJ8
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BU of 2gj8 by Molmil
Structure of the MnmE G-domain in complex with GDP*AlF4-, Mg2+ and K+
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, POTASSIUM ION, ...
Authors:Scrima, A, Wittinghofer, A.
Deposit date:2006-03-30
Release date:2006-07-04
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Dimerisation-dependent GTPase reaction of MnmE: how potassium acts as GTPase-activating element.
Embo J., 25, 2006
4A09
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BU of 4a09 by Molmil
Structure of hsDDB1-drDDB2 bound to a 15 bp CPD-duplex (purine at D-1 position) at 3.1 A resolution (CPD 2)
Descriptor: 5'-D(*CP*CP*TP*GP*CP*TP*CP*CP*TP*TP*TP*CP*AP*CP*CP*C)-3', 5'-D(*GP*GP*TP*GP*AP*AP*AP*(TTD)P*AP*GP*CP*AP*GP*GP)-3', CALCIUM ION, ...
Authors:Scrima, A, Fischer, E.S, Iwai, S, Gut, H, Thoma, N.H.
Deposit date:2011-09-08
Release date:2011-11-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:The Molecular Basis of Crl4(Ddb2/Csa) Ubiquitin Ligase Architecture, Targeting, and Activation
Cell(Cambridge,Mass.), 147, 2011
4A0C
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BU of 4a0c by Molmil
Structure of the CAND1-CUL4B-RBX1 complex
Descriptor: CULLIN-4B, CULLIN-ASSOCIATED NEDD8-DISSOCIATED PROTEIN 1, E3 UBIQUITIN-PROTEIN LIGASE RBX1, ...
Authors:Scrima, A, Fischer, E.S, Faty, M, Gut, H, Thoma, N.H.
Deposit date:2011-09-08
Release date:2011-11-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:The Molecular Basis of Crl4(Ddb2/Csa) Ubiquitin Ligase Architecture, Targeting, and Activation
Cell(Cambridge,Mass.), 147, 2011
4A0B
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BU of 4a0b by Molmil
Structure of hsDDB1-drDDB2 bound to a 16 bp CPD-duplex (pyrimidine at D-1 position) at 3.8 A resolution (CPD 4)
Descriptor: 5'-D(*CP*CP*TP*GP*CP*TP*CP*CP*TP*TP*TP*CP*AP*CP*CP*C)-3', 5'-D(*DGP*GP*TP*GP*AP*AP*AP*(TTD)P*AP*GP*CP*AP*GP*DGP)-3', DNA DAMAGE-BINDING PROTEIN 1, ...
Authors:Scrima, A, Fischer, E.S, Iwai, S, Gut, H, Thoma, N.H.
Deposit date:2011-09-08
Release date:2011-11-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:The Molecular Basis of Crl4(Ddb2/Csa) Ubiquitin Ligase Architecture, Targeting, and Activation
Cell(Cambridge,Mass.), 147, 2011
4A08
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BU of 4a08 by Molmil
Structure of hsDDB1-drDDB2 bound to a 13 bp CPD-duplex (purine at D-1 position) at 3.0 A resolution (CPD 1)
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 5'-D(*AP*CP*GP*CP*GP*AP*(TTD)P*GP*CP*GP*CP*CP*C)-3', 5'-D(*TP*GP*GP*GP*CP*GP*CP*CP*CP*TP*CP*GP*CP*G)-3', ...
Authors:Scrima, A, Fischer, E.S, Iwai, S, Gut, H, Thoma, N.H.
Deposit date:2011-09-08
Release date:2011-11-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:The Molecular Basis of Crl4(Ddb2/Csa) Ubiquitin Ligase Architecture, Targeting, and Activation
Cell(Cambridge,Mass.), 147, 2011
4A0A
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BU of 4a0a by Molmil
Structure of hsDDB1-drDDB2 bound to a 16 bp CPD-duplex (pyrimidine at D-1 position) at 3.6 A resolution (CPD 3)
Descriptor: 5'-D(*CP*CP*TP*GP*CP*TP*CP*CP*TP*TP*TP*CP*AP*CP*CP*C)-3', 5'-D(*GP*GP*TP*GP*AP*AP*AP*(TTD)P*AP*GP*CP*AP*GP*DGP)-3', CALCIUM ION, ...
Authors:Scrima, A, Fischer, E.S, Iwai, S, Gut, H, Thoma, N.H.
Deposit date:2011-09-08
Release date:2011-11-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:The Molecular Basis of Crl4(Ddb2/Csa) Ubiquitin Ligase Architecture, Targeting, and Activation
Cell(Cambridge,Mass.), 147, 2011
3CP2
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BU of 3cp2 by Molmil
Crystal structure of GidA from E. coli
Descriptor: SULFATE ION, tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
Authors:Scrima, A, Meyer, S, Versees, W, Wittinghofer, A.
Deposit date:2008-03-30
Release date:2008-06-24
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structures of the conserved tRNA-modifying enzyme GidA: implications for its interaction with MnmE and substrate
J.Mol.Biol., 380, 2008
6I0I
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BU of 6i0i by Molmil
Structure of the streptomyces subtilisin and TAMP inhibitor (SSTI)
Descriptor: Transglutaminase-activating metalloprotease inhibitor
Authors:Schmelz, S, Juettner, N.E, Fuchsbauer, H.L, Scrima, A.
Deposit date:2018-10-26
Release date:2019-09-04
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.448 Å)
Cite:The N-terminal peptide of the transglutaminase-activating metalloprotease inhibitor from Streptomyces mobaraensis accommodates both inhibition and glutamine cross-linking sites.
Febs J., 287, 2020
5FZP
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BU of 5fzp by Molmil
Structure of the dispase autolysis inducing protein from Streptomyces mobaraensis
Descriptor: CALCIUM ION, DISPASE AUTOLYSIS-INDUCING PROTEIN, GLYCEROL
Authors:Schmelz, S, Fiebig, D, Beck, J, Fuchsbauer, H.L, Scrima, A.
Deposit date:2016-03-15
Release date:2016-08-10
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of the Dispase Autolysis Inducing Protein from Streptomyces Mobaraensis and Glutamine Cross-Linking Sites for Transglutaminase
J.Biol.Chem., 291, 2016
2NTY
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BU of 2nty by Molmil
Rop4-GDP-PRONE8
Descriptor: Emb|CAB41934.1, GUANOSINE-5'-DIPHOSPHATE, Rac-like GTP-binding protein ARAC5
Authors:Thomas, C, Fricke, I, Scrima, A, Berken, A, Wittinghofer, A.
Deposit date:2006-11-08
Release date:2007-01-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural Evidence for a Common Intermediate in Small G Protein-GEF Reactions
Mol.Cell, 25, 2007
2NTX
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BU of 2ntx by Molmil
Prone8
Descriptor: Emb|CAB41934.1
Authors:Thomas, C, Fricke, I, Scrima, A, Berken, A, Wittinghofer, A.
Deposit date:2006-11-08
Release date:2007-01-23
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Evidence for a Common Intermediate in Small G Protein-GEF Reactions
Mol.Cell, 25, 2007
2BAP
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BU of 2bap by Molmil
Crystal structure of the N-terminal mDia1 Armadillo Repeat Region and Dimerisation Domain in complex with the mDia1 autoregulatory domain (DAD)
Descriptor: Diaphanous protein homolog 1
Authors:Lammers, M, Rose, R, Scrima, A, Wittinghofer, A.
Deposit date:2005-10-14
Release date:2006-03-07
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:The regulation of mDia1 by autoinhibition and its release by Rho*GTP.
Embo J., 24, 2005
6XZ5
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BU of 6xz5 by Molmil
RovC - regulator of virulence interconnected with the Csr system
Descriptor: SULFATE ION, Uncharacterized protein,RovC,Uncharacterized protein
Authors:Sadana, P, Scrima, A.
Deposit date:2020-02-02
Release date:2020-09-16
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:RovC - a novel type of hexameric transcriptional activator promoting type VI secretion gene expression.
Plos Pathog., 16, 2020
6GMG
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BU of 6gmg by Molmil
Structure of a glutamine donor mimicking inhibitory peptide shaped by the catalytic cleft of microbial transglutaminase
Descriptor: CITRATE ANION, DI(HYDROXYETHYL)ETHER, PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE, ...
Authors:Schmelz, S, Juettner, N.E, Fuchsbauer, H.L, Scrima, A.
Deposit date:2018-05-25
Release date:2018-10-24
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structure of a glutamine donor mimicking inhibitory peptide shaped by the catalytic cleft of microbial transglutaminase.
FEBS J., 285, 2018
6FHP
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BU of 6fhp by Molmil
DAIP in complex with a C-terminal fragment of thermolysin
Descriptor: Dispase autolysis-inducing protein, Thermolysin
Authors:Schmelz, S, Fiebig, D, Fuchsbauer, H.L, Blankenfeldt, W, Scrima, A.
Deposit date:2018-01-15
Release date:2018-09-12
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.703 Å)
Cite:Destructive twisting of neutral metalloproteases: the catalysis mechanism of the Dispase autolysis-inducing protein from Streptomyces mobaraensis DSM 40487.
FEBS J., 285, 2018
5KE1
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BU of 5ke1 by Molmil
Structure of a C-terminal fragment of the IcsA/VirG passenger-domain
Descriptor: NICKEL (II) ION, Outer membrane protein IcsA autotransporter
Authors:Leupold, S, Scrima, A.
Deposit date:2016-06-09
Release date:2017-03-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural insights into the architecture of the Shigella flexneri virulence factor IcsA/VirG and motifs involved in polar distribution and secretion.
J. Struct. Biol., 198, 2017

 

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