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Crystal structure of the Corn aptamer in unliganded state
Descriptor:	ACETATE ION, IRIDIUM HEXAMMINE ION, IRIDIUM ION, ...
Authors:	Sjekloca, L, Ferre-D'Amare, A.R.
Deposit date:	2018-07-27
Release date:	2019-07-31
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (2.901 Å)
Cite:	Binding between G Quadruplexes at the Homodimer Interface of the Corn RNA Aptamer Strongly Activates Thioflavin T Fluorescence. Cell Chem Biol, 26, 2019

6E84

Crystal structure of the Corn aptamer in complex with TO
Descriptor:	1-methyl-4-[(Z)-(3-methyl-1,3-benzothiazol-2(3H)-ylidene)methyl]quinolin-1-ium, POTASSIUM ION, RNA (36-MER)
Authors:	Sjekloca, L, Ferre-D'Amare, A.R.
Deposit date:	2018-07-27
Release date:	2019-07-31
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (2.901 Å)
Cite:	Binding between G Quadruplexes at the Homodimer Interface of the Corn RNA Aptamer Strongly Activates Thioflavin T Fluorescence. Cell Chem Biol, 26, 2019

6E82

Crystal structure of the Corn aptamer mutant A14U in complex with ThT
Descriptor:	2-[4-(dimethylamino)phenyl]-3,6-dimethyl-1,3-benzothiazol-3-ium, POTASSIUM ION, RNA (36-MER)
Authors:	Sjekloca, L, Ferre-D'Amare, A.R.
Deposit date:	2018-07-27
Release date:	2019-07-31
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (3.101 Å)
Cite:	Binding between G Quadruplexes at the Homodimer Interface of the Corn RNA Aptamer Strongly Activates Thioflavin T Fluorescence. Cell Chem Biol, 26, 2019

6E81

Crystal structure of the Corn aptamer in complex with ThT
Descriptor:	2-[4-(dimethylamino)phenyl]-3,6-dimethyl-1,3-benzothiazol-3-ium, POTASSIUM ION, RNA (36-MER)
Authors:	Sjekloca, L, Ferre-D'Amare, A.R.
Deposit date:	2018-07-27
Release date:	2019-07-31
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (2.721 Å)
Cite:	Binding between G Quadruplexes at the Homodimer Interface of the Corn RNA Aptamer Strongly Activates Thioflavin T Fluorescence. Cell Chem Biol, 26, 2019

6E8S

Structure of the iMango-III aptamer bound to TO1-Biotin
Descriptor:	4-[(3-{2-[(2-methoxyethyl)amino]-2-oxoethyl}-1,3-benzothiazol-3-ium-2-yl)methyl]-1-methylquinolin-1-ium, MAGNESIUM ION, POTASSIUM ION, ...
Authors:	Trachman, R.J, Ferre-D'Amare, A.R.
Deposit date:	2018-07-31
Release date:	2019-04-17
Last modified:	2024-03-13
Method:	X-RAY DIFFRACTION (2.35 Å)
Cite:	Structure and functional reselection of the Mango-III fluorogenic RNA aptamer. Nat. Chem. Biol., 15, 2019

6E8U

Structure of the Mango-III (A10U) aptamer bound to TO1-Biotin
Descriptor:	4-[(3-{2,16-dioxo-20-[(3aR,4R,6aS)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]-6,9,12-trioxa-3,15-diazaicosan-1-yl}-1,3-benzothiazol-3-ium-2-yl)methyl]-1-methylquinolin-1-ium, MAGNESIUM ION, POTASSIUM ION, ...
Authors:	Trachman, R.J, Ferre-D'Amare, A.R.
Deposit date:	2018-07-31
Release date:	2019-04-17
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (1.55 Å)
Cite:	Structure and functional reselection of the Mango-III fluorogenic RNA aptamer. Nat. Chem. Biol., 15, 2019

2H0W

Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme
Descriptor:	2-(N-MORPHOLINO)-ETHANESULFONIC ACID, MAGNESIUM ION, glmS ribozyme RNA, ...
Authors:	Klein, D.J, Ferre-D'Amare, A.R.
Deposit date:	2006-05-15
Release date:	2006-09-26
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (2.4 Å)
Cite:	Structural basis of glmS ribozyme activation by glucosamine-6-phosphate Science, 313, 2006

2H0Z

Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate
Descriptor:	6-O-phosphono-alpha-D-glucopyranose, MAGNESIUM ION, glmS ribozyme RNA, ...
Authors:	Klein, D.J, Ferre-D'Amare, A.R.
Deposit date:	2006-05-15
Release date:	2006-09-26
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (2.7 Å)
Cite:	Structural basis of glmS ribozyme activation by glucosamine-6-phosphate Science, 313, 2006

2GCS

Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme
Descriptor:	MAGNESIUM ION, glmS ribozyme RNA, glmS ribozyme amino RNA inhibitor
Authors:	Klein, D.J, Ferre-D'Amare, A.R.
Deposit date:	2006-03-14
Release date:	2006-09-26
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	Structural basis of glmS ribozyme activation by glucosamine-6-phosphate Science, 313, 2006

2GCV

Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme
Descriptor:	2-(N-MORPHOLINO)-ETHANESULFONIC ACID, MAGNESIUM ION, glmS ribozyme RNA, ...
Authors:	Klein, D.J, Ferre-D'Amare, A.R.
Deposit date:	2006-03-14
Release date:	2006-09-26
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	Structural basis of glmS ribozyme activation by glucosamine-6-phosphate Science, 313, 2006

2HO7

Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate
Descriptor:	6-O-phosphono-alpha-D-glucopyranose, MAGNESIUM ION, glmS ribozyme RNA, ...
Authors:	Klein, D.J, Ferre-D'Amare, A.R.
Deposit date:	2006-07-13
Release date:	2006-09-26
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (2.9 Å)
Cite:	Structural basis of glmS ribozyme activation by glucosamine-6-phosphate Science, 313, 2006

2HOK

Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, calcium ions
Descriptor:	CALCIUM ION, THIAMINE DIPHOSPHATE, thi-box riboswitch
Authors:	Edwards, T.E, Ferre-D'Amare, A.R.
Deposit date:	2006-07-14
Release date:	2006-09-19
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (3.2 Å)
Cite:	Crystal Structures of the Thi-Box Riboswitch Bound to Thiamine Pyrophosphate Analogs Reveal Adaptive RNA-Small Molecule Recognition Structure, 14, 2006

2H0X

Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme
Descriptor:	MAGNESIUM ION, glmS ribozyme RNA, glmS ribozyme amino RNA inhibitor
Authors:	Klein, D.J, Ferre-D'Amare, A.R.
Deposit date:	2006-05-15
Release date:	2006-09-26
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	Structural basis of glmS ribozyme activation by glucosamine-6-phosphate Science, 313, 2006

2H0S

Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme
Descriptor:	MAGNESIUM ION, glmS ribozyme RNA, glmS ribozyme deoxy RNA inhibitor
Authors:	Klein, D.J, Ferre-D'Amare, A.R.
Deposit date:	2006-05-15
Release date:	2006-09-26
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (2.35 Å)
Cite:	Structural basis of glmS ribozyme activation by glucosamine-6-phosphate Science, 313, 2006

2HO6

Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme
Descriptor:	2-(N-MORPHOLINO)-ETHANESULFONIC ACID, MAGNESIUM ION, glmS ribozyme RNA, ...
Authors:	Klein, D.J, Ferre-D'Amare, A.R.
Deposit date:	2006-07-13
Release date:	2006-09-26
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (2.8 Å)
Cite:	Structural basis of glmS ribozyme activation by glucosamine-6-phosphate Science, 313, 2006

2HOM

Crystal structure of an E. coli thi-box riboswitch bound to thiamine monophosphate
Descriptor:	CALCIUM ION, MAGNESIUM ION, THIAMIN PHOSPHATE, ...
Authors:	Edwards, T.E, Ferre-D'Amare, A.R.
Deposit date:	2006-07-14
Release date:	2006-09-19
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (2.89 Å)
Cite:	Crystal Structures of the Thi-Box Riboswitch Bound to Thiamine Pyrophosphate Analogs Reveal Adaptive RNA-Small Molecule Recognition Structure, 14, 2006

2HOL

Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, barium ions
Descriptor:	BARIUM ION, CALCIUM ION, MAGNESIUM ION, ...
Authors:	Edwards, T.E, Ferre-D'Amare, A.R.
Deposit date:	2006-07-14
Release date:	2006-09-19
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (2.9 Å)
Cite:	Crystal Structures of the Thi-Box Riboswitch Bound to Thiamine Pyrophosphate Analogs Reveal Adaptive RNA-Small Molecule Recognition Structure, 14, 2006

2HOJ

Crystal structure of an E. coli thi-box riboswitch bound to thiamine pyrophosphate, manganese ions
Descriptor:	MAGNESIUM ION, MANGANESE (II) ION, THIAMINE DIPHOSPHATE, ...
Authors:	Edwards, T.E, Ferre-D'Amare, A.R.
Deposit date:	2006-07-14
Release date:	2006-09-19
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	Crystal Structures of the Thi-Box Riboswitch Bound to Thiamine Pyrophosphate Analogs Reveal Adaptive RNA-Small Molecule Recognition Structure, 14, 2006

2HOP

Crystal structure of an E. coli thi-box riboswitch bound to pyrithiamine
Descriptor:	1-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-3-(2-HYDROXYETHYL)-2-METHYLPYRIDINIUM, CALCIUM ION, MAGNESIUM ION, ...
Authors:	Edwards, T.E, Ferre-D'Amare, A.R.
Deposit date:	2006-07-14
Release date:	2006-09-19
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (3.3 Å)
Cite:	Crystal Structures of the Thi-Box Riboswitch Bound to Thiamine Pyrophosphate Analogs Reveal Adaptive RNA-Small Molecule Recognition Structure, 14, 2006

2HOO

Crystal structure of an E. coli thi-box riboswitch bound to benfotiamine
Descriptor:	CALCIUM ION, S-BENZOYLTHIAMINE O-MONOPHOSPHATE, thi-box riboswitch
Authors:	Edwards, T.E, Ferre-D'Amare, A.R.
Deposit date:	2006-07-14
Release date:	2006-09-19
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (3 Å)
Cite:	Crystal Structures of the Thi-Box Riboswitch Bound to Thiamine Pyrophosphate Analogs Reveal Adaptive RNA-Small Molecule Recognition Structure, 14, 2006

5VHA

DHX36 with an N-terminal truncation
Descriptor:	DEAH (Asp-Glu-Ala-His) box polypeptide 36
Authors:	Chen, M, Ferre-D'Amare, A.
Deposit date:	2017-04-12
Release date:	2018-06-13
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (2.227 Å)
Cite:	Structural basis of G-quadruplex unfolding by the DEAH/RHA helicase DHX36. Nature, 558, 2018

5VHD

DHX36 with an N-terminal truncation bound to ADP-AlF4
Descriptor:	ADENOSINE-5'-DIPHOSPHATE, DEAH (Asp-Glu-Ala-His) box polypeptide 36, TETRAFLUOROALUMINATE ION
Authors:	Chen, M, Ferre-D'Amare, A.
Deposit date:	2017-04-13
Release date:	2018-06-13
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (2.55 Å)
Cite:	Structural basis of G-quadruplex unfolding by the DEAH/RHA helicase DHX36. Nature, 558, 2018

5VHC

DHX36 with an N-terminal truncation bound to ADP-BeF3
Descriptor:	ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DEAH (Asp-Glu-Ala-His) box polypeptide 36, ...
Authors:	Chen, M, Ferre-D'Amare, A.
Deposit date:	2017-04-12
Release date:	2018-06-13
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (2.49 Å)
Cite:	Structural basis of G-quadruplex unfolding by the DEAH/RHA helicase DHX36. Nature, 558, 2018

6PUP

1.9 A crystal structure of flavodoxin-like domain of Schizosaccharomyces japonicus putative tRNAPhe 4-demethylwyosine synthase Tyw1 in complex with FMN
Descriptor:	FLAVIN MONONUCLEOTIDE, MANGANESE (II) ION, Wybutosine biosynthesis protein Tyw1
Authors:	Sjekloca, L, Ferre D'Amare, A.R.
Deposit date:	2019-07-18
Release date:	2020-07-29
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (1.89 Å)
Cite:	Biochemical and structural characterization of the flavodoxin-like domain of the Schizosaccharomyces japonicus putative tRNAPhe 4-demethylwyosine synthase Tyw1 in complex with FMN. MicroPubl Biol, 2022, 2022

8F5G

NusG-RNA complex
Descriptor:	DI(HYDROXYETHYL)ETHER, RNA, Transcription termination/antitermination protein NusG
Authors:	Elghondakly, A.T, Ferre-D'Amare, A.R.
Deposit date:	2022-11-14
Release date:	2023-11-22
Last modified:	2024-07-10
Method:	X-RAY DIFFRACTION (2.7 Å)
Cite:	Major-groove sequence-specific RNA recognition by LoaP, a paralog of transcription elongation factor NusG Structure, 2024

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