7C21
| Crystal structure of Duvenhage virus phosphoprotein C-terminal domain | Descriptor: | Phosphoprotein | Authors: | Sugiyama, A, Jiang, X, Maenaka, K, Yao, M, Ose, T. | Deposit date: | 2020-05-06 | Release date: | 2021-03-17 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | Structural comparison of the C-terminal domain of functionally divergent lyssavirus P proteins. Biochem.Biophys.Res.Commun., 529, 2020
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5E1Q
| Mutant (D415G) GH97 alpha-galactosidase in complex with Gal-Lac | Descriptor: | CALCIUM ION, GLYCEROL, Retaining alpha-galactosidase, ... | Authors: | Matsunaga, K, Yamashita, K, Tagami, T, Yao, M, Okuyama, M, Kimura, A. | Deposit date: | 2015-09-30 | Release date: | 2016-10-05 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.943 Å) | Cite: | Efficient synthesis of alpha-galactosyl oligosaccharides using a mutant Bacteroides thetaiotaomicron retaining alpha-galactosidase (BtGH97b). FEBS J., 284, 2017
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1GD6
| STRUCTURE OF THE BOMBYX MORI LYSOZYME | Descriptor: | LYSOZYME | Authors: | Matsuura, A, Aizawa, T, Yao, M, Kawano, K, Tanaka, I, Nitta, K. | Deposit date: | 2000-09-19 | Release date: | 2001-03-21 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Structural analysis of an insect lysozyme exhibiting catalytic efficiency at low temperatures. Biochemistry, 41, 2002
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5GHA
| Sulfur Transferase TtuA in complex with Sulfur Carrier TtuB | Descriptor: | 1,2-ETHANEDIOL, SULFATE ION, Sulfur Carrier TtuB, ... | Authors: | Chen, M, Narai, S, Tanaka, Y, Yao, M. | Deposit date: | 2016-06-19 | Release date: | 2017-05-03 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.502 Å) | Cite: | Biochemical and structural characterization of oxygen-sensitive 2-thiouridine synthesis catalyzed by an iron-sulfur protein TtuA Proc. Natl. Acad. Sci. U.S.A., 114, 2017
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1J1W
| Crystal Structure Of The Monomeric Isocitrate Dehydrogenase In Complex With NADP+ | Descriptor: | Isocitrate Dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | Authors: | Yasutake, Y, Watanabe, S, Yao, M, Takada, Y, Fukunaga, N, Tanaka, I. | Deposit date: | 2002-12-19 | Release date: | 2003-09-23 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (3.2 Å) | Cite: | Crystal Structure of the Monomeric Isocitrate Dehydrogenase in the Presence of NADP+ J.Biol.Chem., 278, 2003
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1J0D
| ACC deaminase mutant complexed with ACC | Descriptor: | 1-aminocyclopropane-1-carboxylate deaminase, N-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-Y-LMETHYL]-1-AMINO-CYCLOPROPANECARBOXYLIC ACID | Authors: | Ose, T, Fujino, A, Yao, M, Honma, M, Tanaka, I. | Deposit date: | 2002-11-12 | Release date: | 2003-05-12 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Reaction intermediate structures of 1-aminocyclopropane-1-carboxylate deaminase: insight into PLP-dependent cyclopropane ring-opening reaction J.BIOL.CHEM., 278, 2003
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3IS1
| Crystal structure of functional region of UafA from Staphylococcus saprophyticus in C2 form at 2.45 angstrom resolution | Descriptor: | GLYCEROL, Uro-adherence factor A | Authors: | Tanaka, Y, Matsuoka, E, Shouji, Y, Kuroda, M, Tanaka, I, Yao, M. | Deposit date: | 2009-08-24 | Release date: | 2010-09-08 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.45 Å) | Cite: | Crystal structure of the functional region of Uro-adherence factor A from Staphylococcus saprophyticus reveals participation of the B domain in ligand binding Protein Sci., 20, 2011
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3IS0
| Crystal structure of functional region of UafA from Staphylococcus saprophyticus in the presence of cholesterol | Descriptor: | GLYCEROL, Uro-adherence factor A | Authors: | Tanaka, Y, Shouji, Y, Matsuoka, E, Kuroda, M, Tanaka, I, Yao, M. | Deposit date: | 2009-08-24 | Release date: | 2010-09-08 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | Crystal Structure of Functional Region of UafA from Staphylococcus saprophyticus To be Published
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3IRP
| Crystal structure of functional region of UafA from Staphylococcus saprophyticus at 1.50 angstrom resolution | Descriptor: | GLYCEROL, POTASSIUM ION, Uro-adherence factor A | Authors: | Tanaka, Y, Shouji, Y, Matsuoka, E, Kuroda, M, Tanaka, I, Yao, M. | Deposit date: | 2009-08-24 | Release date: | 2010-09-08 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Crystal structure of the functional region of Uro-adherence factor A from Staphylococcus saprophyticus reveals participation of the B domain in ligand binding Protein Sci., 20, 2011
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3IRZ
| Crystal structure of functional region of UafA from Staphylococcus saprophyticus in P212121 form | Descriptor: | GLYCEROL, Uro-adherence factor A | Authors: | Tanaka, Y, Shouji, Y, Matsuoka, E, Kuroda, M, Tanaka, I, Yao, M. | Deposit date: | 2009-08-24 | Release date: | 2010-09-08 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Crystal structure of the functional region of Uro-adherence factor A from Staphylococcus saprophyticus reveals participation of the B domain in ligand binding Protein Sci., 20, 2011
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1UCG
| Crystal structure of Ribonuclease MC1 N71T mutant | Descriptor: | MANGANESE (II) ION, Ribonuclease MC | Authors: | Suzuki, A, Numata, T, Yao, M, Tanaka, I, Kimura, M. | Deposit date: | 2003-04-14 | Release date: | 2003-04-29 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | Crystal structures of the ribonuclease MC1 mutants N71T and N71S in complex with 5'-GMP: structural basis for alterations in substrate specificity Biochemistry, 42, 2003
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1J0E
| ACC deaminase mutant reacton intermediate | Descriptor: | 1-AMINOCYCLOPROPANECARBOXYLIC ACID, 1-aminocyclopropane-1-carboxylate deaminase, PYRIDOXAL-5'-PHOSPHATE | Authors: | Ose, T, Fujino, A, Yao, M, Honma, M, Tanaka, I. | Deposit date: | 2002-11-12 | Release date: | 2003-05-12 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.45 Å) | Cite: | Reaction intermediate structures of 1-aminocyclopropane-1-carboxylate deaminase: insight into PLP-dependent cyclopropane ring-opening reaction J.BIOL.CHEM., 278, 2003
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5DCV
| Crystal structure of PhoRpp38-SL12M complex | Descriptor: | 50S ribosomal protein L7Ae, RNA (47-MER) | Authors: | Oshima, K, Tanaka, Y, Yao, M. | Deposit date: | 2015-08-24 | Release date: | 2016-07-06 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3.401 Å) | Cite: | Structural basis for recognition of a kink-turn motif by an archaeal homologue of human RNase P protein Rpp38 Biochem.Biophys.Res.Commun., 474, 2016
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5IP3
| Tomato spotted wilt tospovirus nucleocapsid protein-ssDNA complex | Descriptor: | DNA (5'-D(P*TP*TP*TP*TP*T)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*T)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*TP*T)-3'), ... | Authors: | Komoda, K, Narita, M, Yamashita, K, Tanaka, I, Yao, M. | Deposit date: | 2016-03-09 | Release date: | 2017-03-22 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | Asymmetric Trimeric Ring Structure of the Nucleocapsid Protein of Tospovirus. J. Virol., 91, 2017
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5IP1
| Tomato spotted wilt tospovirus nucleocapsid protein | Descriptor: | Nucleoprotein | Authors: | Komoda, K, Narita, M, Yamashita, K, Tanaka, I, Yao, M. | Deposit date: | 2016-03-09 | Release date: | 2017-03-22 | Last modified: | 2018-03-21 | Method: | X-RAY DIFFRACTION (2.703 Å) | Cite: | Asymmetric Trimeric Ring Structure of the Nucleocapsid Protein of Tospovirus. J. Virol., 91, 2017
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5IP2
| Tomato spotted wilt tospovirus nucleocapsid protein-ssRNA complex | Descriptor: | Nucleoprotein, RNA (5'-D(P*UP*UP*U)-3'), RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Authors: | Komoda, K, Narita, M, Yamashita, K, Tanaka, I, Yao, M. | Deposit date: | 2016-03-09 | Release date: | 2017-03-22 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3.3 Å) | Cite: | Asymmetric Trimeric Ring Structure of the Nucleocapsid Protein of Tospovirus. J. Virol., 91, 2017
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2OCC
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5ZTB
| Structure of Sulfurtransferase | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, IRON/SULFUR CLUSTER, ... | Authors: | Tanaka, Y, Chen, M, Narai, S, Yao, M. | Deposit date: | 2018-05-02 | Release date: | 2019-06-12 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | The [4Fe-4S] cluster of sulfurtransferase TtuA desulfurizes TtuB during tRNA modification in Thermus thermophilus. Commun Biol, 3, 2020
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1WE5
| Crystal Structure of Alpha-Xylosidase from Escherichia coli | Descriptor: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Putative family 31 glucosidase yicI | Authors: | Ose, T, Kitamura, M, Okuyama, M, Mori, H, Kimura, A, Watanabe, N, Yao, M, Tanaka, I. | Deposit date: | 2004-05-24 | Release date: | 2005-02-15 | Last modified: | 2017-10-11 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Crystal Structure of Alpha-Xylosidase from Escherichia coli TO BE PUBLISHED
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4DWQ
| RNA ligase RtcB-GMP/Mn(2+) complex | Descriptor: | GLYCEROL, GUANOSINE-5'-MONOPHOSPHATE, MALONATE ION, ... | Authors: | Okada, C, Xia, S, Englert, M, Yao, M, Soll, D, Wang, J. | Deposit date: | 2012-02-26 | Release date: | 2012-09-05 | Last modified: | 2017-08-02 | Method: | X-RAY DIFFRACTION (2.25 Å) | Cite: | Structural and mechanistic insights into guanylylation of RNA-splicing ligase RtcB joining RNA between 3'-terminal phosphate and 5'-OH. Proc.Natl.Acad.Sci.USA, 109, 2012
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1ITW
| Crystal structure of the monomeric isocitrate dehydrogenase in complex with isocitrate and Mn | Descriptor: | ISOCITRIC ACID, Isocitrate dehydrogenase, MANGANESE (II) ION | Authors: | Yasutake, Y, Watanabe, S, Yao, M, Takada, Y, Fukunaga, N, Tanaka, I. | Deposit date: | 2002-02-12 | Release date: | 2002-12-11 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | Structure of the Monomeric Isocitrate Dehydrogenase: Evidence of a Protein Monomerization by a Domain Duplication Structure, 10, 2002
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4P1Y
| Crystal structure of staphylococcal gamma-hemolysin prepore | Descriptor: | Gamma-hemolysin component A, Gamma-hemolysin component B | Authors: | Yamashita, D, Tanaka, Y, Tanaka, I, Yao, M. | Deposit date: | 2014-02-28 | Release date: | 2014-10-01 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.992 Å) | Cite: | Molecular basis of transmembrane beta-barrel formation of staphylococcal pore-forming toxins. Nat Commun, 5, 2014
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4P1X
| Crystal structure of staphylococcal LUK prepore | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, Gamma-hemolysin component B, Gamma-hemolysin component C | Authors: | Yamashita, D, Tanaka, Y, Tanaka, I, Yao, M. | Deposit date: | 2014-02-28 | Release date: | 2014-10-01 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Molecular basis of transmembrane beta-barrel formation of staphylococcal pore-forming toxins. Nat Commun, 5, 2014
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4F86
| Structure analysis of Geranyl diphosphate methyltransferase in complex with GPP and sinefungin | Descriptor: | GERANYL DIPHOSPHATE, Geranyl diphosphate 2-C-methyltransferase, MAGNESIUM ION, ... | Authors: | Ariyawutthiphan, O, Ose, T, Minami, A, Gao, Y.G, Yao, M, Oikawa, H, Tanaka, I. | Deposit date: | 2012-05-17 | Release date: | 2012-10-31 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | Structure analysis of geranyl pyrophosphate methyltransferase and the proposed reaction mechanism of SAM-dependent C-methylation Acta Crystallogr.,Sect.D, 68, 2012
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4F85
| Structure analysis of Geranyl diphosphate methyltransferase | Descriptor: | Geranyl diphosphate 2-C-methyltransferase | Authors: | Ariyawutthiphan, O, Ose, T, Minami, A, Gao, Y.G, Yao, M, Oikawa, H, Tanaka, I. | Deposit date: | 2012-05-17 | Release date: | 2012-10-31 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Structure analysis of geranyl pyrophosphate methyltransferase and the proposed reaction mechanism of SAM-dependent C-methylation Acta Crystallogr.,Sect.D, 68, 2012
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