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5LKW
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BU of 5lkw by Molmil
Crystal structure of the peptidoglycan-associated lipoprotein (Pal) from Burkholderia cepacia in complex with DAP
Descriptor: 2,6-DIAMINOPIMELIC ACID, Putative OmpA family lipoprotein
Authors:Romano, M, Ruggiero, A, Berisio, R.
Deposit date:2016-07-25
Release date:2017-08-16
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Burkholderia cenocepacia peptidoglycan-associated lipoprotein is involved in epithelial cell attachment and elicitation of inflammation.
Cell. Microbiol., 19, 2017
5EOC
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BU of 5eoc by Molmil
Crystal structure of Fab C2 in complex with a Cyclic variant of Hepatitis C Virus E2 epitope I
Descriptor: ALA-CYS-GLN-LEU-ILE-ASN-THR-ASN-GLY-SER-TRP-HIS-ILE-CYS, Fab fragment (Heavy chain), Fab fragment (Light chain)
Authors:Berisio, R, Ruggiero, A, Sandomenico, A, Patel, A.H, Ruvo, M, Vitagliano, L.
Deposit date:2015-11-10
Release date:2016-02-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Generation and Characterization of Monoclonal Antibodies against a Cyclic Variant of Hepatitis C Virus E2 Epitope 412-422.
J.Virol., 90, 2016
6SVF
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BU of 6svf by Molmil
Crystal structure of the P235GK mutant of ArgBP from T. maritima
Descriptor: ARGININE, Amino acid ABC transporter, periplasmic amino acid-binding protein
Authors:Vitagliano, L, Berisio, R, Esposito, L, Balasco, N, Smaldone, G, Ruggiero, A.
Deposit date:2019-09-18
Release date:2019-11-20
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The non-swapped monomeric structure of the arginine-binding protein from Thermotoga maritima.
Acta Crystallogr.,Sect.F, 75, 2019
4KL7
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BU of 4kl7 by Molmil
Crystal structure of the catalytic domain of RpfB from Mycobacterium tuberculosis
Descriptor: Resuscitation-promoting factor RpfB, SULFATE ION
Authors:Squeglia, F, Romano, M, Ruggiero, A, Berisio, R.
Deposit date:2013-05-07
Release date:2013-06-26
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Carbohydrate Recognition by RpfB from Mycobacterium tuberculosis Unveiled by Crystallographic and Molecular Dynamics Analyses.
Biophys.J., 104, 2013
4KPM
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BU of 4kpm by Molmil
Crystal structure of the catalytic domain of RpfB from Mycobacterium tuberculosis in complex with triNAG
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, BENZAMIDINE, Resuscitation-promoting factor RpfB, ...
Authors:Squeglia, F, Ruggiero, A, Berisio, R.
Deposit date:2013-05-14
Release date:2013-06-26
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Carbohydrate Recognition by RpfB from Mycobacterium tuberculosis Unveiled by Crystallographic and Molecular Dynamics Analyses.
Biophys.J., 104, 2013
4JMX
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BU of 4jmx by Molmil
Structure of LD transpeptidase LdtMt1 in complex with imipenem
Descriptor: (5R)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-[(2-{[(E)-iminomethyl]amino}ethyl)sulfanyl]-4,5-dihydro-1H-pyrrole-2-carbox ylic acid, Probable L,D-transpeptidase LdtA
Authors:Correale, S, Ruggiero, A, Capparelli, R, Pedone, E, Berisio, R.
Deposit date:2013-03-14
Release date:2013-10-23
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structures of free and inhibited forms of the L,D-transpeptidase LdtMt1 from Mycobacterium tuberculosis.
Acta Crystallogr.,Sect.D, 69, 2013
2MGV
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BU of 2mgv by Molmil
NMR structure of PASTA domain of PonA2 from Mycobacterium tuberculosis
Descriptor: Bifunctional membrane-associated penicillin-binding protein 1A/1B ponA2
Authors:Calvanese, L, Falcigno, L, Maglione, C, Marasco, D, Ruggiero, A, Squeglia, F, Berisio, R, D'Auria, G.
Deposit date:2013-11-11
Release date:2013-12-25
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural and binding properties of the PASTA domain of PonA2, a key penicillin binding protein from Mycobacterium tuberculosis.
Biopolymers, 101, 2014
6GPD
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BU of 6gpd by Molmil
Crystal structure of the ligand-free form of domain 1 from TmArgBP
Descriptor: Amino acid ABC transporter, periplasmic amino acid-binding protein,Amino acid ABC transporter, periplasmic amino acid-binding protein
Authors:Smaldone, G, Balasco, N, Ruggiero, A, Berisio, R, Vitagliano, L.
Deposit date:2018-06-05
Release date:2018-08-15
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Domain communication in Thermotoga maritima Arginine Binding Protein unraveled through protein dissection.
Int. J. Biol. Macromol., 119, 2018
6GGP
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BU of 6ggp by Molmil
Structure of the ligand-free form of truncated ArgBP (residues 20-233) from T. maritima
Descriptor: Amino acid ABC transporter, periplasmic amino acid-binding protein
Authors:Smaldone, G, Berisio, R, Balasco, N, D'Auria, S, Vitagliano, L, Ruggiero, A.
Deposit date:2018-05-03
Release date:2018-06-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.03 Å)
Cite:Domain swapping dissection in Thermotoga maritima arginine binding protein: How structural flexibility may compensate destabilization.
Biochim. Biophys. Acta, 1866, 2018
6GGV
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BU of 6ggv by Molmil
Structure of the arginine-bound form of truncated (residues 20-233) ArgBP from T. maritima
Descriptor: ARGININE, Amino acid ABC transporter, periplasmic amino acid-binding protein, ...
Authors:Smaldone, G, Berisio, R, Balasco, N, D'Auria, S, Vitagliano, L, Ruggiero, A.
Deposit date:2018-05-04
Release date:2018-06-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Domain swapping dissection in Thermotoga maritima arginine binding protein: How structural flexibility may compensate destabilization.
Biochim. Biophys. Acta, 1866, 2018
6GPC
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BU of 6gpc by Molmil
Crystal structure of the arginine-bound form of domain 1 from TmArgBP
Descriptor: ARGININE, Amino acid ABC transporter, periplasmic amino acid-binding protein,Amino acid ABC transporter, ...
Authors:Smaldone, G, Balasco, N, Ruggiero, A, Berisio, R, Vitagliano, L.
Deposit date:2018-06-05
Release date:2018-08-15
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Domain communication in Thermotoga maritima Arginine Binding Protein unraveled through protein dissection.
Int. J. Biol. Macromol., 119, 2018
6GPM
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BU of 6gpm by Molmil
Crystal structure of domain 2 from TmArgBP
Descriptor: Amino acid ABC transporter, periplasmic amino acid-binding protein
Authors:Smaldone, G, Balasco, N, Ruggiero, A, Berisio, R, Vitagliano, L.
Deposit date:2018-06-06
Release date:2018-08-15
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Domain communication in Thermotoga maritima Arginine Binding Protein unraveled through protein dissection.
Int. J. Biol. Macromol., 119, 2018
4Q4N
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BU of 4q4n by Molmil
Structure of the Resuscitation Promoting Factor Interacting protein RipA mutated at H432
Descriptor: Peptidoglycan endopeptidase RipA
Authors:Squeglia, F, Ruggiero, A, Romano, M, Vitagliano, L, Berisio, R.
Deposit date:2014-04-15
Release date:2014-09-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Mutational and structural study of RipA, a key enzyme in Mycobacterium tuberculosis cell division: evidence for the L-to-D inversion of configuration of the catalytic cysteine.
Acta Crystallogr.,Sect.D, 70, 2014
4Q4T
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BU of 4q4t by Molmil
Structure of the Resuscitation Promoting Factor Interacting protein RipA mutated at E444
Descriptor: FORMIC ACID, GLYCEROL, Peptidoglycan endopeptidase RipA
Authors:Squeglia, F, Ruggiero, A, Romano, M, Vitagliano, L, Berisio, R.
Deposit date:2014-04-15
Release date:2014-09-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Mutational and structural study of RipA, a key enzyme in Mycobacterium tuberculosis cell division: evidence for the L-to-D inversion of configuration of the catalytic cysteine.
Acta Crystallogr.,Sect.D, 70, 2014
8BKE
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BU of 8bke by Molmil
Crystal structure of the Klebsiella phage KP34p57 capsular depolymerase
Descriptor: Uncharacterized protein 57
Authors:Berisio, R, Squeglia, F.
Deposit date:2022-11-09
Release date:2023-08-30
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Klebsiella phage KP34gp57 capsular depolymerase structure and function: from a serendipitous finding to the design of active mini-enzymes against K. pneumoniae.
Mbio, 14, 2023
6TKU
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BU of 6tku by Molmil
Crystal structure of a capsule-specific depolymerase produced by Klebsiella phage
Descriptor: depolymerase KP32gp38
Authors:Berisio, R, Squeglia, F.
Deposit date:2019-11-29
Release date:2020-04-22
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and Functional Studies of a Klebsiella Phage Capsule Depolymerase Tailspike: Mechanistic Insights into Capsular Degradation.
Structure, 28, 2020
2N5Z
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BU of 2n5z by Molmil
Mycobacterium tuberculosis: a dynamic view of the resuscitation promoting factor RpfC catalytic domain
Descriptor: Resuscitation-promoting factor RpfC
Authors:Maione, V, Russo, L, Isernia, C.
Deposit date:2015-08-07
Release date:2015-11-25
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:NMR Structure and Dynamics of the Resuscitation Promoting Factor RpfC Catalytic Domain.
Plos One, 10, 2015
4Q4G
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BU of 4q4g by Molmil
Structure of the Resuscitation Promoting Factor Interacting protein RipA mutated at C383
Descriptor: Peptidoglycan endopeptidase RipA
Authors:Berisio, R.
Deposit date:2014-04-14
Release date:2014-09-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (0.97 Å)
Cite:Mutational and structural study of RipA, a key enzyme in Mycobacterium tuberculosis cell division: evidence for the L-to-D inversion of configuration of the catalytic cysteine.
Acta Crystallogr.,Sect.D, 70, 2014
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