5AY2
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![BU of 5ay2 by Molmil](/molmil-images/mine/5ay2) | Crystal structure of RNA duplex containing C-Ag(I)-C base pairs | Descriptor: | RNA (5'-R(*GP*GP*AP*CP*UP*(CBR)P*GP*AP*CP*UP*CP*C)-3'), SILVER ION | Authors: | Kondo, J, Tada, Y, Dairaku, T, Saneyoshi, H, Okamoto, I, Tanaka, Y, Ono, A. | Deposit date: | 2015-08-06 | Release date: | 2015-10-21 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.3 Å) | Cite: | High-Resolution Crystal Structure of a Silver(I)-RNA Hybrid Duplex Containing Watson-Crick-like CSilver(I)C Metallo-Base Pairs Angew.Chem.Int.Ed.Engl., 54, 2015
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5AY3
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![BU of 5ay3 by Molmil](/molmil-images/mine/5ay3) | Crystal structure of RNA duplex containing C-C base pairs | Descriptor: | RNA (5'-R(*GP*GP*AP*CP*UP*(CBR)P*GP*A*CP*UP*CP*C)-3') | Authors: | Kondo, J, Tada, Y, Dairaku, T, Saneyoshi, H, Okamoto, I, Tanaka, Y, Ono, A. | Deposit date: | 2015-08-06 | Release date: | 2015-10-21 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.2 Å) | Cite: | High-Resolution Crystal Structure of a Silver(I)-RNA Hybrid Duplex Containing Watson-Crick-like CSilver(I)C Metallo-Base Pairs Angew.Chem.Int.Ed.Engl., 54, 2015
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2GOT
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![BU of 2got by Molmil](/molmil-images/mine/2got) | |
5XUV
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![BU of 5xuv by Molmil](/molmil-images/mine/5xuv) | Crystal structure of DNA duplex containing 4-thiothymine-2Ag(I)-4-thiothymine base pairs | Descriptor: | DNA (5'-D(*CP*GP*CP*GP*AP*(8RO)P*(8RO)P*TP*CP*GP*CP*G)-3'), POTASSIUM ION, SILVER ION | Authors: | Kondo, J, Sugawara, T, Saneyoshi, H, Ono, A. | Deposit date: | 2017-06-26 | Release date: | 2017-09-20 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal structure of a DNA duplex containing four Ag(i) ions in consecutive dinuclear Ag(i)-mediated base pairs: 4-thiothymine-2Ag(i)-4-thiothymine Chem. Commun. (Camb.), 53, 2017
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1UHY
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![BU of 1uhy by Molmil](/molmil-images/mine/1uhy) | Crystal structure of d(GCGATAGC): the base-intercalated duplex | Descriptor: | 5'-D(*GP*(CBR)P*GP*AP*TP*AP*GP*C)-3', CHLORIDE ION, COBALT HEXAMMINE(III), ... | Authors: | Kondo, J, Umeda, S.I, Fujita, K, Sunami, T, Takenaka, A. | Deposit date: | 2003-07-13 | Release date: | 2004-02-03 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | X-ray analyses of d(GCGAXAGC) containing G and T at X: the base-intercalated duplex is still stable even in point mutants at the fifth residue. J.Synchrotron Radiat., 11, 2004
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1UHX
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![BU of 1uhx by Molmil](/molmil-images/mine/1uhx) | Crystal structure of d(GCGAGAGC): the base-intercalated duplex | Descriptor: | 5'-D(*GP*(CBR)P*GP*AP*GP*AP*GP*C)-3', CHLORIDE ION, COBALT HEXAMMINE(III), ... | Authors: | Kondo, J, Umeda, S.I, Fujita, K, Sunami, T, Takenaka, A. | Deposit date: | 2003-07-13 | Release date: | 2004-02-03 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | X-ray analyses of d(GCGAXAGC) containing G and T at X: the base-intercalated duplex is still stable even in point mutants at the fifth residue. J.Synchrotron Radiat., 11, 2004
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4P3U
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![BU of 4p3u by Molmil](/molmil-images/mine/4p3u) | |
1V3O
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![BU of 1v3o by Molmil](/molmil-images/mine/1v3o) | Crystal structure of d(GCGAGAGC): the DNA quadruplex structure split from the octaplex | Descriptor: | 5'-D(*GP*(C38)P*GP*AP*GP*AP*GP*C)-3', POTASSIUM ION | Authors: | Kondo, J, Umeda, S, Sunami, T, Takenaka, A. | Deposit date: | 2003-11-03 | Release date: | 2004-06-08 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Crystal structures of a DNA octaplex with I-motif of G-quartets and its splitting into two quadruplexes suggest a folding mechanism of eight tandem repeats Nucleic Acids Res., 32, 2004
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4P3S
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![BU of 4p3s by Molmil](/molmil-images/mine/4p3s) | |
4P3T
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![BU of 4p3t by Molmil](/molmil-images/mine/4p3t) | |
3BNL
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![BU of 3bnl by Molmil](/molmil-images/mine/3bnl) | |
3BNQ
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![BU of 3bnq by Molmil](/molmil-images/mine/3bnq) | |
3BNP
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![BU of 3bnp by Molmil](/molmil-images/mine/3bnp) | |
1V3N
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![BU of 1v3n by Molmil](/molmil-images/mine/1v3n) | Crystal structure of d(GCGAGAGC): the DNA quadruplex structure split from the octaplex | Descriptor: | 5'-D(*GP*(CBR)P*GP*AP*GP*AP*GP*C)-3', POTASSIUM ION | Authors: | Kondo, J, Umeda, S, Sunami, T, Takenaka, A. | Deposit date: | 2003-11-03 | Release date: | 2004-06-08 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal structures of a DNA octaplex with I-motif of G-quartets and its splitting into two quadruplexes suggest a folding mechanism of eight tandem repeats Nucleic Acids Res., 32, 2004
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1V3P
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![BU of 1v3p by Molmil](/molmil-images/mine/1v3p) | Crystal structure of d(GCGAGAGC): the DNA octaplex structure with I-motif of G-quartet | Descriptor: | 5'-D(*GP*(C38)P*GP*AP*GP*AP*GP*C)-3', POTASSIUM ION | Authors: | Kondo, J, Umeda, S, Sunami, T, Takenaka, A. | Deposit date: | 2003-11-03 | Release date: | 2004-06-08 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal structures of a DNA octaplex with I-motif of G-quartets and its splitting into two quadruplexes suggest a folding mechanism of eight tandem repeats Nucleic Acids Res., 32, 2004
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3BNT
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![BU of 3bnt by Molmil](/molmil-images/mine/3bnt) | |
3BNO
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![BU of 3bno by Molmil](/molmil-images/mine/3bno) | |
3BNN
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![BU of 3bnn by Molmil](/molmil-images/mine/3bnn) | |
4U6M
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![BU of 4u6m by Molmil](/molmil-images/mine/4u6m) | Crystal structure of DNA/RNA duplex obtained in the presence of Spermine | Descriptor: | DNA (5'-D(*(5CM)P*TP*CP*TP*TP*CP*TP*TP*(5CM))-3'), RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') | Authors: | Kondo, J, Nomura, Y, Kitahara, Y, Obika, S, Torigoe, H. | Deposit date: | 2014-07-29 | Release date: | 2015-08-19 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | The crystal structure of a 2',4'-BNA(NC)[N-Me]-modified antisense gapmer in complex with the target RNA. Chem.Commun.(Camb.), 52, 2016
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4U6K
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![BU of 4u6k by Molmil](/molmil-images/mine/4u6k) | Crystal structure of DNA/RNA duplex containing 2'-4'-BNA-NC | Descriptor: | COBALT HEXAMMINE(III), DNA (5'-D(*(NCU)P*(NTT)P*CP*TP*TP*CP*TP*(NTT)P*(NCU))-3'), RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') | Authors: | Kondo, J, Nomura, Y, Kitahara, Y, Obika, S, Torigoe, H. | Deposit date: | 2014-07-29 | Release date: | 2015-08-19 | Last modified: | 2024-06-26 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | The crystal structure of a 2',4'-BNA(NC)[N-Me]-modified antisense gapmer in complex with the target RNA. Chem.Commun.(Camb.), 52, 2016
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3BNS
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![BU of 3bns by Molmil](/molmil-images/mine/3bns) | |
3BNR
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![BU of 3bnr by Molmil](/molmil-images/mine/3bnr) | |
2FQN
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![BU of 2fqn by Molmil](/molmil-images/mine/2fqn) | |
7EFG
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![BU of 7efg by Molmil](/molmil-images/mine/7efg) | RNA kink-turn motif | Descriptor: | RNA (5'-R(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') | Authors: | Kondo, J, Nagashima, M. | Deposit date: | 2021-03-21 | Release date: | 2022-04-13 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | RNA kink-turn motif To Be Published
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7EAQ
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![BU of 7eaq by Molmil](/molmil-images/mine/7eaq) | |