5XT6
| A sulfur-transferring catalytic intermediate of SufS-SufU complex from Bacillus subtilis | Descriptor: | 2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID, Cysteine desulfurase SufS, ZINC ION, ... | Authors: | Fujishiro, T, Kunichika, K, Takahashi, Y. | Deposit date: | 2017-06-17 | Release date: | 2017-12-20 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (3.5 Å) | Cite: | Zinc-Ligand Swapping Mediated Complex Formation and Sulfur Transfer between SufS and SufU for Iron-Sulfur Cluster Biogenesis in Bacillus subtilis J. Am. Chem. Soc., 139, 2017
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5XT5
| SufS-SufU complex from Bacillus subtilis | Descriptor: | Cysteine desulfurase SufS, PYRIDOXAL-5'-PHOSPHATE, ZINC ION, ... | Authors: | Fujishiro, T, Takahashi, Y. | Deposit date: | 2017-06-17 | Release date: | 2017-12-20 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.34 Å) | Cite: | Zinc-Ligand Swapping Mediated Complex Formation and Sulfur Transfer between SufS and SufU for Iron-Sulfur Cluster Biogenesis in Bacillus subtilis J. Am. Chem. Soc., 139, 2017
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4YT4
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4YT8
| SeMet-labelled HmdII from Methanocaldococcus jannaschii | Descriptor: | H(2)-forming methylenetetrahydromethanopterin dehydrogenase-related protein MJ1338, TRIETHYLENE GLYCOL | Authors: | Fujishiro, T, Ermler, U, Shima, S. | Deposit date: | 2015-03-17 | Release date: | 2015-07-01 | Last modified: | 2024-10-16 | Method: | X-RAY DIFFRACTION (1.902 Å) | Cite: | Towards a functional identification of catalytically inactive [Fe]-hydrogenase paralogs. Febs J., 282, 2015
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4YT2
| Hmd II from Methanocaldococcus jannaschii | Descriptor: | DI(HYDROXYETHYL)ETHER, H(2)-forming methylenetetrahydromethanopterin dehydrogenase-related protein MJ1338, TRIETHYLENE GLYCOL | Authors: | Fujishiro, T, Ermler, U, Shima, S. | Deposit date: | 2015-03-17 | Release date: | 2015-07-01 | Last modified: | 2024-05-01 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | Towards a functional identification of catalytically inactive [Fe]-hydrogenase paralogs. Febs J., 282, 2015
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5D4V
| HcgC with SAH and a guanylylpyridinol (GP) derivative | Descriptor: | 5'-O-[(R)-[(3,6-dimethyl-2-oxo-1,2-dihydropyridin-4-yl)oxy](hydroxy)phosphoryl]guanosine, S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION, ... | Authors: | Fujishiro, T, Ermler, U, Shima, S. | Deposit date: | 2015-08-09 | Release date: | 2016-07-20 | Last modified: | 2024-01-10 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Identification of HcgC as a SAM-Dependent Pyridinol Methyltransferase in [Fe]-Hydrogenase Cofactor Biosynthesis. Angew.Chem.Int.Ed.Engl., 55, 2016
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5D4T
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5D5T
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4YTE
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5D4U
| SAM-bound HcgC from Methanocaldococcus jannaschii | Descriptor: | S-ADENOSYLMETHIONINE, SULFATE ION, Uncharacterized protein MJ0489 | Authors: | Fujishiro, T, Ermler, U, Shima, S. | Deposit date: | 2015-08-09 | Release date: | 2016-07-20 | Last modified: | 2024-01-10 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Identification of HcgC as a SAM-Dependent Pyridinol Methyltransferase in [Fe]-Hydrogenase Cofactor Biosynthesis. Angew.Chem.Int.Ed.Engl., 55, 2016
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5D5O
| HcgC from Methanocaldococcus jannaschii | Descriptor: | SULFATE ION, Uncharacterized protein MJ0489 | Authors: | Fujishiro, T, Ermler, U, Shima, S. | Deposit date: | 2015-08-11 | Release date: | 2016-07-20 | Last modified: | 2024-05-08 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Identification of HcgC as a SAM-Dependent Pyridinol Methyltransferase in [Fe]-Hydrogenase Cofactor Biosynthesis. Angew.Chem.Int.Ed.Engl., 55, 2016
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4YT5
| HmdII from Methanocaldococcus jannaschii with bound methylene-tetrahydromethanopterin | Descriptor: | 5,10-DIMETHYLENE TETRAHYDROMETHANOPTERIN, H(2)-forming methylenetetrahydromethanopterin dehydrogenase-related protein MJ1338, TRIETHYLENE GLYCOL | Authors: | Fujishiro, T, Ermler, U, Shima, S. | Deposit date: | 2015-03-17 | Release date: | 2015-07-01 | Last modified: | 2024-05-01 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Towards a functional identification of catalytically inactive [Fe]-hydrogenase paralogs. Febs J., 282, 2015
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5ZT8
| SirB from Bacillus subtilis | Descriptor: | Sirohydrochlorin ferrochelatase | Authors: | Fujishiro, T. | Deposit date: | 2018-05-02 | Release date: | 2019-02-27 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structure of sirohydrochlorin ferrochelatase SirB: the last of the structures of the class II chelatase family. Dalton Trans, 48, 2019
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5ZTA
| SirB from Bacillus subtilis with Fe3+ | Descriptor: | FE (III) ION, Sirohydrochlorin ferrochelatase | Authors: | Fujishiro, T. | Deposit date: | 2018-05-02 | Release date: | 2019-06-12 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (3.07 Å) | Cite: | A route for metal acquisition for chelatase reaction catalyzed by SirB from Bacillus subtilis To be published
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5ZT7
| SirB from Bacillus subtilis with Co2+ | Descriptor: | COBALT (II) ION, Sirohydrochlorin ferrochelatase | Authors: | Fujishiro, T. | Deposit date: | 2018-05-02 | Release date: | 2019-02-27 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (2.94 Å) | Cite: | Structure of sirohydrochlorin ferrochelatase SirB: the last of the structures of the class II chelatase family. Dalton Trans, 48, 2019
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5ZT9
| SirB from Bacillus subtilis with Ni2+ | Descriptor: | NICKEL (II) ION, Sirohydrochlorin ferrochelatase | Authors: | Fujishiro, T. | Deposit date: | 2018-05-02 | Release date: | 2019-06-12 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | A route for metal acquisition for chelatase reaction catalyzed by SirB from Bacillus subtilis To be published
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5WT5
| L-homocysteine-bound NifS from Helicobacter pylori | Descriptor: | 2-AMINO-4-MERCAPTO-BUTYRIC ACID, Cysteine desulfurase IscS, ISOPROPYL ALCOHOL | Authors: | Fujishiro, T, Takahashi, Y. | Deposit date: | 2016-12-09 | Release date: | 2017-12-13 | Last modified: | 2024-03-06 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structural snapshot of cysteine desulfurase NifS with L-cysteine in initiation of catalysis to be published
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5WT6
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7WSX
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3AWM
| Cytochrome P450SP alpha (CYP152B1) wild-type with palmitic acid | Descriptor: | (4R)-2-METHYLPENTANE-2,4-DIOL, Fatty acid alpha-hydroxylase, PALMITIC ACID, ... | Authors: | Fujishiro, T, Shoji, O, Nagano, S, Sugimoto, H, Shiro, Y, Watanabe, Y. | Deposit date: | 2011-03-25 | Release date: | 2011-06-29 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | Crystal structure of H2O2-dependent cytochrome P450SPalpha with its bound fatty acid substrate: insight into the regioselective hydroxylation of fatty acids at the alpha position J.Biol.Chem., 286, 2011
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3AWP
| Cytochrome P450SP alpha (CYP152B1) mutant F288G | Descriptor: | (4R)-2-METHYLPENTANE-2,4-DIOL, Fatty acid alpha-hydroxylase, PALMITIC ACID, ... | Authors: | Fujishiro, T, Shoji, O, Nagano, S, Sugimoto, H, Shiro, Y, Watanabe, Y. | Deposit date: | 2011-03-25 | Release date: | 2011-06-29 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal structure of H2O2-dependent cytochrome P450SPalpha with its bound fatty acid substrate: insight into the regioselective hydroxylation of fatty acids at the alpha position. J.Biol.Chem., 286, 2011
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3AWQ
| Cytochrome P450SP alpha (CYP152B1) mutant L78F | Descriptor: | Fatty acid alpha-hydroxylase, PALMITIC ACID, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Fujishiro, T, Shoji, O, Nagano, S, Sugimoto, H, Shiro, Y, Watanabe, Y. | Deposit date: | 2011-03-25 | Release date: | 2011-06-29 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal structure of H2O2-dependent cytochrome P450SPalpha with its bound fatty acid substrate: insight into the regioselective hydroxylation of fatty acids at the alpha position. J.Biol.Chem., 286, 2011
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6M2G
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6M25
| Sirohydrochlorin nickelochelatase CfbA in P41 space group | Descriptor: | Sirohydrochlorin cobaltochelatase | Authors: | Fujishiro, T. | Deposit date: | 2020-02-26 | Release date: | 2021-01-13 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | The nickel-sirohydrochlorin formation mechanism of the ancestral class II chelatase CfbA in coenzyme F430 biosynthesis. Chem Sci, 12, 2021
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6M27
| Sirohydrochlorin nickelochelatase CfbA in complex with Ni2+ | Descriptor: | NICKEL (II) ION, Sirohydrochlorin cobaltochelatase | Authors: | Fujishiro, T. | Deposit date: | 2020-02-26 | Release date: | 2021-01-13 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | The nickel-sirohydrochlorin formation mechanism of the ancestral class II chelatase CfbA in coenzyme F430 biosynthesis. Chem Sci, 12, 2021
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