7WNK
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![BU of 7wnk by Molmil](/molmil-images/mine/7wnk) | Crystal structure of a mutant Staphylococcus equorum manganese superoxide dismutase K38R and A121E | Descriptor: | AZIDE ION, BROMIDE ION, DI(HYDROXYETHYL)ETHER, ... | Authors: | Retnoningrum, D.S, Yoshida, H, Artarini, A.A, Ismaya, W.T. | Deposit date: | 2022-01-18 | Release date: | 2023-01-25 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | Introducing Intermolecular Interaction to Strengthen the Stability of MnSOD Dimer. Appl.Biochem.Biotechnol., 195, 2023
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7WNL
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![BU of 7wnl by Molmil](/molmil-images/mine/7wnl) | Crystal structure of a mutant Staphylococcus equorum manganese superoxide dismutase K38R and A121Y | Descriptor: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, AZIDE ION, BROMIDE ION, ... | Authors: | Retnoningrum, D.S, Yoshida, H, Artarini, A.A, Ismaya, W.T. | Deposit date: | 2022-01-18 | Release date: | 2023-01-25 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.51 Å) | Cite: | Introducing Intermolecular Interaction to Strengthen the Stability of MnSOD Dimer. Appl.Biochem.Biotechnol., 195, 2023
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1RCL
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![BU of 1rcl by Molmil](/molmil-images/mine/1rcl) | |
7W6W
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![BU of 7w6w by Molmil](/molmil-images/mine/7w6w) | Crystal structure of a mutant Staphylococcus equorum manganese superoxide dismutase L169W | Descriptor: | AZIDE ION, MANGANESE (II) ION, Superoxide dismutase | Authors: | Retnoningrum, D.S, Yoshida, H, Artarini, A.A, Ismaya, W.T. | Deposit date: | 2021-12-02 | Release date: | 2022-12-07 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.94 Å) | Cite: | Introducing Intermolecular Interaction to Strengthen the Stability of MnSOD Dimer. Appl.Biochem.Biotechnol., 195, 2023
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3VUS
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![BU of 3vus by Molmil](/molmil-images/mine/3vus) | Escherichia coli PgaB N-terminal domain | Descriptor: | ACETATE ION, MERCURY (II) ION, Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase, ... | Authors: | Nishiyama, T, Noguchi, H, Yoshida, H, Park, S.-Y, Tame, J.R.H. | Deposit date: | 2012-07-05 | Release date: | 2012-11-14 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | The structure of the deacetylase domain of Escherichia coli PgaB, an enzyme required for biofilm formation: a circularly permuted member of the carbohydrate esterase 4 family Acta Crystallogr.,Sect.D, 69, 2013
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3WUC
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![BU of 3wuc by Molmil](/molmil-images/mine/3wuc) | X-ray crystal structure of Xenopus laevis galectin-Va | Descriptor: | Galectin, MALONIC ACID, beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose | Authors: | Nonaka, Y, Yoshida, H, Kamitori, S, Nakamura, T. | Deposit date: | 2014-04-23 | Release date: | 2015-04-08 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Crystal structure of a Xenopus laevis skin proto-type galectin, close to but distinct from galectin-1. Glycobiology, 25, 2015
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3WUD
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![BU of 3wud by Molmil](/molmil-images/mine/3wud) | X-ray crystal structure of Xenopus laevis galectin-Ib | Descriptor: | Galectin, SULFATE ION, beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose | Authors: | Nonaka, Y, Yoshida, H, Kamitori, S, Nakamura, T. | Deposit date: | 2014-04-23 | Release date: | 2015-04-08 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.68 Å) | Cite: | Crystal structure of a Xenopus laevis skin proto-type galectin, close to but distinct from galectin-1. Glycobiology, 25, 2015
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5WQW
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![BU of 5wqw by Molmil](/molmil-images/mine/5wqw) | X-ray structure of catalytic domain of autolysin from Clostridium perfringens | Descriptor: | 1,2-ETHANEDIOL, N-acetylglucosaminidase | Authors: | Tamai, E, Sekiya, H, Goda, E, Makihata, N, Maki, J, Yoshida, H, Kamitori, S. | Deposit date: | 2016-11-29 | Release date: | 2016-12-07 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.76 Å) | Cite: | Structural and biochemical characterization of the Clostridium perfringens autolysin catalytic domain FEBS Lett., 591, 2017
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2ZYK
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![BU of 2zyk by Molmil](/molmil-images/mine/2zyk) | Crystal structure of cyclo/maltodextrin-binding protein complexed with gamma-cyclodextrin | Descriptor: | Cyclooctakis-(1-4)-(alpha-D-glucopyranose), Solute-binding protein | Authors: | Tonozuka, T, Sogawa, A, Yamada, M, Matsumoto, N, Yoshida, H, Kamitori, S, Ichikawa, K, Mizuno, M, Nishikawa, A, Sakano, Y. | Deposit date: | 2009-01-26 | Release date: | 2009-02-10 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Structural basis for cyclodextrin recognition by Thermoactinomyces vulgaris cyclo/maltodextrin-binding protein Febs J., 274, 2007
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2Z8G
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![BU of 2z8g by Molmil](/molmil-images/mine/2z8g) | Aspergillus niger ATCC9642 isopullulanase complexed with isopanose | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Isopullulanase, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-6)-beta-D-glucopyranose | Authors: | Mizuno, M, Koide, A, Yamamura, A, Akeboshi, H, Yoshida, H, Kamitori, S, Sakano, Y, Nishikawa, A, Tonozuka, T. | Deposit date: | 2007-09-05 | Release date: | 2007-12-18 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Crystal Structure of Aspergillus niger Isopullulanase, a Member of Glycoside Hydrolase Family 49 J.Mol.Biol., 376, 2008
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3CW4
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![BU of 3cw4 by Molmil](/molmil-images/mine/3cw4) | Large c-terminal domain of influenza a virus RNA-dependent polymerase PB2 | Descriptor: | Polymerase basic protein 2 | Authors: | Kuzuhara, T, Kise, D, Yoshida, H, Horita, T, Murasaki, Y, Utsunomiya, H, Fujiki, H, Tsuge, H. | Deposit date: | 2008-04-21 | Release date: | 2009-01-13 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Structural basis of the influenza A virus RNA polymerase PB2 RNA-binding domain containing the pathogenicity-determinant lysine 627 residue J.Biol.Chem., 284, 2009
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3W7T
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![BU of 3w7t by Molmil](/molmil-images/mine/3w7t) | Escherichia coli K12 YgjK complexed with mannose | Descriptor: | CALCIUM ION, MAGNESIUM ION, Uncharacterized protein YgjK, ... | Authors: | Miyazaki, T, Kurakata, Y, Uechi, A, Yoshida, H, Kamitori, S, Sakano, Y, Nishikawa, A, Tonozuka, T. | Deposit date: | 2013-03-06 | Release date: | 2013-04-03 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Structural insights into the substrate specificity and function of Escherichia coli K12 YgjK, a glucosidase belonging to the glycoside hydrolase family 63. J.Mol.Biol., 381, 2008
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3W7S
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![BU of 3w7s by Molmil](/molmil-images/mine/3w7s) | Escherichia coli K12 YgjK complexed with glucose | Descriptor: | CALCIUM ION, Uncharacterized protein YgjK, alpha-D-glucopyranose | Authors: | Miyazaki, T, Kurakata, Y, Uechi, A, Yoshida, H, Kamitori, S, Sakano, Y, Nishikawa, A, Tonozuka, T. | Deposit date: | 2013-03-06 | Release date: | 2013-04-03 | Last modified: | 2020-07-29 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structural insights into the substrate specificity and function of Escherichia coli K12 YgjK, a glucosidase belonging to the glycoside hydrolase family 63. J.Mol.Biol., 381, 2008
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3WW3
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![BU of 3ww3 by Molmil](/molmil-images/mine/3ww3) | X-ray structures of Cellulomonas parahominis L-ribose isomerase with no ligand | Descriptor: | L-ribose isomerase, MANGANESE (II) ION | Authors: | Terami, Y, Yoshida, H, Takata, G, Kamitori, S. | Deposit date: | 2014-06-13 | Release date: | 2015-04-29 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Essentiality of tetramer formation of Cellulomonas parahominis L-ribose isomerase involved in novel L-ribose metabolic pathway. Appl.Microbiol.Biotechnol., 99, 2015
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3WW1
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![BU of 3ww1 by Molmil](/molmil-images/mine/3ww1) | X-ray structure of Cellulomonas parahominis L-ribose isomerase with L-ribose | Descriptor: | L-ribose, L-ribose isomerase, MANGANESE (II) ION, ... | Authors: | Terami, Y, Yoshida, H, Takata, G, Kamitori, S. | Deposit date: | 2014-06-13 | Release date: | 2015-04-29 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | Essentiality of tetramer formation of Cellulomonas parahominis L-ribose isomerase involved in novel L-ribose metabolic pathway. Appl.Microbiol.Biotechnol., 99, 2015
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3W7U
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![BU of 3w7u by Molmil](/molmil-images/mine/3w7u) | Escherichia coli K12 YgjK complexed with galactose | Descriptor: | CALCIUM ION, Uncharacterized protein YgjK, alpha-D-galactopyranose | Authors: | Miyazaki, T, Kurakata, Y, Uechi, A, Yoshida, H, Kamitori, S, Sakano, Y, Nishikawa, A, Tonozuka, T. | Deposit date: | 2013-03-06 | Release date: | 2013-04-03 | Last modified: | 2020-07-29 | Method: | X-RAY DIFFRACTION (1.99 Å) | Cite: | Structural insights into the substrate specificity and function of Escherichia coli K12 YgjK, a glucosidase belonging to the glycoside hydrolase family 63. J.Mol.Biol., 381, 2008
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3WW4
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![BU of 3ww4 by Molmil](/molmil-images/mine/3ww4) | X-ray structures of Cellulomonas parahominis L-ribose isomerase with L-allose | Descriptor: | L-allose, L-ribose isomerase, MANGANESE (II) ION, ... | Authors: | Terami, Y, Yoshida, H, Takata, G, Kamitori, S. | Deposit date: | 2014-06-13 | Release date: | 2015-04-29 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | Essentiality of tetramer formation of Cellulomonas parahominis L-ribose isomerase involved in novel L-ribose metabolic pathway. Appl.Microbiol.Biotechnol., 99, 2015
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3WW2
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![BU of 3ww2 by Molmil](/molmil-images/mine/3ww2) | X-ray structures of Cellulomonas parahominis L-ribose isomerase with L-psicose | Descriptor: | L-psicose, L-ribose isomerase, MANGANESE (II) ION, ... | Authors: | Terami, Y, Yoshida, H, Takata, G, Kamitori, S. | Deposit date: | 2014-06-13 | Release date: | 2015-04-29 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Essentiality of tetramer formation of Cellulomonas parahominis L-ribose isomerase involved in novel L-ribose metabolic pathway. Appl.Microbiol.Biotechnol., 99, 2015
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3B4X
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5X2J
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![BU of 5x2j by Molmil](/molmil-images/mine/5x2j) | Crystal structure of a recombinant hybrid manganese superoxide dismutase from Staphylococcus equorum and Staphylococcus saprophyticus | Descriptor: | MANGANESE (II) ION, manganese superoxide dismutase | Authors: | Retnoningrum, D.S, Yoshida, H, Arumsari, S, Kamitori, S, Ismaya, W.T. | Deposit date: | 2017-01-31 | Release date: | 2018-01-31 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | The first crystal structure of manganese superoxide dismutase from the genus Staphylococcus Acta Crystallogr F Struct Biol Commun, 74, 2018
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2ZKN
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5ZQT
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![BU of 5zqt by Molmil](/molmil-images/mine/5zqt) | Crystal structure of Oryza sativa hexokinase 6 | Descriptor: | Hexokinase-6, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... | Authors: | Matsudaira, K, Mochizuki, S, Yoshida, H, Kamitori, S, Akimitsu, K. | Deposit date: | 2018-04-20 | Release date: | 2019-04-24 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.84 Å) | Cite: | Crystal structure of Oryza sativa hexokinase 6 To Be Published
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2EIS
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![BU of 2eis by Molmil](/molmil-images/mine/2eis) | X-ray structure of acyl-CoA hydrolase-like protein, TT1379, from Thermus thermophilus HB8 | Descriptor: | COENZYME A, Hypothetical protein TTHB207 | Authors: | Kamitori, S, Yoshida, H, Satoh, S, Iino, H, Ebihara, A, Chen, L, Fu, Z.-Q, Chrzas, J, Wang, B.-C, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2007-03-13 | Release date: | 2008-03-18 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | X-ray structure of acyl-CoA hydrolase-like protein, TT1379, from Thermus thermophilus HB8 To be Published
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2ZYO
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![BU of 2zyo by Molmil](/molmil-images/mine/2zyo) | Crystal structure of cyclo/maltodextrin-binding protein complexed with maltotetraose | Descriptor: | alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, solute-binding protein | Authors: | Matsumoto, M, Yamada, M, Kurakata, Y, Yoshida, H, Kamitori, S, Nishikawa, A, Tonozuka, T. | Deposit date: | 2009-01-27 | Release date: | 2009-03-31 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.55 Å) | Cite: | Crystal structures of open and closed forms of cyclo/maltodextrin-binding protein Febs J., 276, 2009
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2ZYM
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![BU of 2zym by Molmil](/molmil-images/mine/2zym) | Crystal structure of cyclo/maltodextrin-binding protein complexed with alpha-cyclodextrin | Descriptor: | Cyclohexakis-(1-4)-(alpha-D-glucopyranose), Solute-binding protein | Authors: | Matsumoto, M, Yamada, M, Kurakata, Y, Yoshida, H, Kamitori, S, Nishikawa, A, Tonozuka, T. | Deposit date: | 2009-01-27 | Release date: | 2009-03-31 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal structures of open and closed forms of cyclo/maltodextrin-binding protein Febs J., 276, 2009
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