2DJH
 
 | | Crystal structure of the carboxy-terminal ribonuclease domain of Colicin E5 | | Descriptor: | 2'-DEOXYURIDINE 3'-MONOPHOSPHATE, 2-AMINO-9-(2-DEOXY-3-O-PHOSPHONOPENTOFURANOSYL)-1,9-DIHYDRO-6H-PURIN-6-ONE, Colicin-E5 | | Authors: | Yajima, S, Inoue, S, Ogawa, T, Nonaka, T, Ohsawa, K, Masaki, H. | | Deposit date: | 2006-04-03 | | Release date: | 2007-01-23 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | Structural basis for sequence-dependent recognition of colicin E5 tRNase by mimicking the mRNA-tRNA interaction
Nucleic Acids Res., 34, 2006
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5YRK
 | | Crystal structure of PPL3C | | Descriptor: | PPL3-b, SULFATE ION | | Authors: | Nakae, S, Shionyu, M, Ogawa, T, Shirai, T. | | Deposit date: | 2017-11-09 | | Release date: | 2018-08-29 | | Method: | X-RAY DIFFRACTION (1.35 Å) | | Cite: | Structures of jacalin-related lectin PPL3 regulating pearl shell biomineralization
Proteins, 86, 2018
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5YRH
 | | Crystal structure of PPL3B | | Descriptor: | PPL3-a, PPL3-b, SULFATE ION | | Authors: | Nakae, S, Shionyu, M, Ogawa, T, Shirai, T. | | Deposit date: | 2017-11-09 | | Release date: | 2018-08-29 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (1.2 Å) | | Cite: | Structures of jacalin-related lectin PPL3 regulating pearl shell biomineralization
Proteins, 86, 2018
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5YRM
 | | PPL3C-isomaltose complex | | Descriptor: | PPL3-b, SULFATE ION, alpha-D-glucopyranose-(1-6)-beta-D-glucopyranose | | Authors: | Nakae, S, Shionyu, M, Ogawa, T, Shirai, T. | | Deposit date: | 2017-11-09 | | Release date: | 2018-08-29 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (1.5 Å) | | Cite: | Structures of jacalin-related lectin PPL3 regulating pearl shell biomineralization
Proteins, 86, 2018
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5YRI
 | | PPL3B-trehalose complex | | Descriptor: | PPL3-a, PPL3-b, SULFATE ION, ... | | Authors: | Nakae, S, Shionyu, M, Ogawa, T, Shirai, T. | | Deposit date: | 2017-11-09 | | Release date: | 2018-08-29 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (1.65 Å) | | Cite: | Structures of jacalin-related lectin PPL3 regulating pearl shell biomineralization
Proteins, 86, 2018
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5YRF
 | | PPL3A-trehalose complex | | Descriptor: | PPL3-A, SULFATE ION, alpha-D-glucopyranose, ... | | Authors: | Nakae, S, Shionyu, M, Ogawa, T, Shirai, T. | | Deposit date: | 2017-11-09 | | Release date: | 2018-08-29 | | Last modified: | 2020-07-29 | | Method: | X-RAY DIFFRACTION (1.7 Å) | | Cite: | Structures of jacalin-related lectin PPL3 regulating pearl shell biomineralization
Proteins, 86, 2018
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5YRJ
 | | PPL3B-isomaltose complex | | Descriptor: | PPL3-a, PPL3-b, SULFATE ION, ... | | Authors: | Nakae, S, Shionyu, M, Ogawa, T, Shirai, T. | | Deposit date: | 2017-11-09 | | Release date: | 2018-08-29 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | Structures of jacalin-related lectin PPL3 regulating pearl shell biomineralization
Proteins, 86, 2018
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5YRL
 | | PPL3C-trehalose complex | | Descriptor: | PPL3-b, SULFATE ION, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose | | Authors: | Nakae, S, Shionyu, M, Ogawa, T, Shirai, T. | | Deposit date: | 2017-11-09 | | Release date: | 2018-08-29 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Structures of jacalin-related lectin PPL3 regulating pearl shell biomineralization
Proteins, 86, 2018
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5YRG
 | | PPL3A-isomaltose complex | | Descriptor: | PPL3-A, SULFATE ION, alpha-D-glucopyranose-(1-6)-beta-D-glucopyranose | | Authors: | Nakae, S, Shionyu, M, Ogawa, T, Shirai, T. | | Deposit date: | 2017-11-09 | | Release date: | 2018-08-29 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (1.5 Å) | | Cite: | Structures of jacalin-related lectin PPL3 regulating pearl shell biomineralization
Proteins, 86, 2018
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5YRE
 | | Crystal structure of PPL3A | | Descriptor: | GLYCEROL, PPL3-A, SULFATE ION | | Authors: | Nakae, S, Shionyu, M, Ogawa, T, Shirai, T. | | Deposit date: | 2017-11-09 | | Release date: | 2018-08-29 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (1.4 Å) | | Cite: | Structures of jacalin-related lectin PPL3 regulating pearl shell biomineralization
Proteins, 86, 2018
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2ZX0
 | | Rhamnose-binding lectin CSL3 | | Descriptor: | CSL3, GLYCEROL, PHOSPHATE ION | | Authors: | Shirai, T, Watababe, Y, Lee, M, Ogawa, T, Muramoto, K. | | Deposit date: | 2008-12-19 | | Release date: | 2009-06-30 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | Structure of rhamnose-binding lectin CSL3: unique pseudo-tetrameric architecture of a pattern recognition protein
J.Mol.Biol., 391, 2009
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2ZX2
 | | Rhamnose-binding lectin CSL3 | | Descriptor: | CSL3, PHOSPHATE ION, alpha-L-rhamnopyranose | | Authors: | Shirai, T, Watababe, Y, Lee, M, Ogawa, T, Muramoto, K. | | Deposit date: | 2008-12-19 | | Release date: | 2009-06-30 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | Structure of rhamnose-binding lectin CSL3: unique pseudo-tetrameric architecture of a pattern recognition protein
J.Mol.Biol., 391, 2009
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2ZX1
 | | Rhamnose-binding lectin CSL3 | | Descriptor: | CSL3, PHOSPHATE ION | | Authors: | Shirai, T, Watababe, Y, Lee, M, Ogawa, T, Muramoto, K. | | Deposit date: | 2008-12-19 | | Release date: | 2009-06-30 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | Structure of rhamnose-binding lectin CSL3: unique pseudo-tetrameric architecture of a pattern recognition protein
J.Mol.Biol., 391, 2009
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2ZX4
 | | Rhamnose-binding lectin CSL3 | | Descriptor: | CSL3, PHOSPHATE ION, alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose, ... | | Authors: | Shirai, T, Watababe, Y, Lee, M, Ogawa, T, Muramoto, K. | | Deposit date: | 2008-12-19 | | Release date: | 2009-06-30 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.7 Å) | | Cite: | Structure of rhamnose-binding lectin CSL3: unique pseudo-tetrameric architecture of a pattern recognition protein
J.Mol.Biol., 391, 2009
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2ZX3
 | | Rhamnose-binding lectin CSL3 | | Descriptor: | CSL3, PHOSPHATE ION, alpha-D-galactopyranose-(1-6)-beta-D-glucopyranose | | Authors: | Shirai, T, Watababe, Y, Lee, M, Ogawa, T, Muramoto, K. | | Deposit date: | 2008-12-19 | | Release date: | 2009-06-30 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Structure of rhamnose-binding lectin CSL3: unique pseudo-tetrameric architecture of a pattern recognition protein
J.Mol.Biol., 391, 2009
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3AJZ
 | | Crystal Structure of Ancestral Congerin Con-anc | | Descriptor: | Ancestral congerin Con-anc, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | | Authors: | Konno, A, Kitagawa, A, Watanabe, M, Ogawa, T, Shirai, T. | | Deposit date: | 2010-06-29 | | Release date: | 2011-05-18 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.5 Å) | | Cite: | Tracing protein evolution through ancestral structures of fish galectin
Structure, 19, 2011
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3AJY
 | | Crystal Structure of Ancestral Congerin Con-anc | | Descriptor: | Ancestral congerin Con-anc, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | | Authors: | Konno, A, Kitagawa, A, Watanabe, M, Ogawa, T, Shirai, T. | | Deposit date: | 2010-06-29 | | Release date: | 2011-05-18 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.01 Å) | | Cite: | Tracing protein evolution through ancestral structures of fish galectin
Structure, 19, 2011
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3AK0
 | | Crystal Structure of Ancestral Congerin Con-anc'-N28K | | Descriptor: | Ancestral congerin Con-anc, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | | Authors: | Konno, A, Kitagawa, A, Watanabe, M, Ogawa, T, Shirai, T. | | Deposit date: | 2010-06-29 | | Release date: | 2011-05-18 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.59 Å) | | Cite: | Tracing protein evolution through ancestral structures of fish galectin
Structure, 19, 2011
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3VJ7
 | | Crystal structure of the carboxy-terminal ribonuclease domain of Colicin E5 R33Q mutant | | Descriptor: | 2'-DEOXYURIDINE 3'-MONOPHOSPHATE, 2-AMINO-9-(2-DEOXY-3-O-PHOSPHONOPENTOFURANOSYL)-1,9-DIHYDRO-6H-PURIN-6-ONE, Colicin-E5 | | Authors: | Yajima, S, Inoue, S, Fushinobu, S, Ogawa, T, Hidaka, M, Masaki, H. | | Deposit date: | 2011-10-13 | | Release date: | 2011-11-02 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | Identification of the catalytic residues of sequence-specific and histidine-free ribonuclease colicin E5
J.Biochem., 152, 2012
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3AO9
 | | Crystal structure of the C-terminal domain of sequence-specific ribonuclease | | Descriptor: | CADMIUM ION, Colicin-E5 | | Authors: | Inoue, S, Fushinobu, S, Ogawa, T, Hidaka, M, Masaki, H, Yajima, S. | | Deposit date: | 2010-09-22 | | Release date: | 2011-09-28 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Identification of the catalytic residues of sequence-specific and histidine-free ribonuclease colicin E5
J.Biochem., 152, 2012
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6M5Y
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7F9F
 | | Thrombocorticin | | Descriptor: | MAGNESIUM ION, Thrombocorticin | | Authors: | Kageyama, H, Onodera, K, Sakai, R, Tanaka, Y, Freymann, D.M. | | Deposit date: | 2021-07-04 | | Release date: | 2022-07-06 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (1.411 Å) | | Cite: | A marine sponge-derived lectin reveals hidden pathway for thrombopoietin receptor activation.
Nat Commun, 13, 2022
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7F9J
 | | Thrombocorticin Q25K in complex with Ca2+ | | Descriptor: | CALCIUM ION, Thrombocorticin Q25K mutant | | Authors: | Kageyama, H, Onodera, K, Sakai, R, Tanaka, Y. | | Deposit date: | 2021-07-04 | | Release date: | 2022-07-06 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (1.1 Å) | | Cite: | A marine sponge-derived lectin reveals hidden pathway for thrombopoietin receptor activation.
Nat Commun, 13, 2022
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7F9G
 | | Thrombocorticin in complex with Ca2+ and fucose | | Descriptor: | CALCIUM ION, Thrombocorticin, alpha-L-fucopyranose | | Authors: | Kageyama, H, Onodera, K, Sakai, R, Tanaka, Y. | | Deposit date: | 2021-07-04 | | Release date: | 2022-07-06 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (1.331 Å) | | Cite: | A marine sponge-derived lectin reveals hidden pathway for thrombopoietin receptor activation.
Nat Commun, 13, 2022
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7F91
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