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De novo design of transmembrane beta-barrels
Descriptor:	Transmembrane beta-barrels
Authors:	Bera, A.K, Vorobieva, A.A, Kang, A.S, Baker, D.
Deposit date:	2020-06-03
Release date:	2021-02-17
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (2.05 Å)
Cite:	De novo design of transmembrane beta barrels. Science, 371, 2021

8SZZ

CryoEM Structure of Computationally Designed Nanocage O32-ZL4
Descriptor:	O32-ZL4 Component A, O32-ZL4 Component B, SODIUM ION
Authors:	Weidle, C, Borst, A.
Deposit date:	2023-05-30
Release date:	2023-11-01
Last modified:	2023-12-27
Method:	ELECTRON MICROSCOPY (2.9 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8V3B

Computational Designed Nanocage O43_129_+4
Descriptor:	O43_129_+4 component A, O43_129_+4 component B
Authors:	Carr, K.D, Weidle, C, Borst, A.J.
Deposit date:	2023-11-27
Release date:	2024-03-13
Last modified:	2024-04-10
Method:	ELECTRON MICROSCOPY (6.4 Å)
Cite:	Blueprinting extendable nanomaterials with standardized protein blocks. Nature, 627, 2024

8V2D

Computational Designed Nanocage O43_129
Descriptor:	O43_129 component A, O43_129 component B
Authors:	Weidle, C, Kibler, R.D.
Deposit date:	2023-11-22
Release date:	2024-03-13
Last modified:	2024-04-10
Method:	ELECTRON MICROSCOPY (6.77 Å)
Cite:	Blueprinting extendable nanomaterials with standardized protein blocks. Nature, 627, 2024

6XNS

C3_crown-05
Descriptor:	C3_crown-05
Authors:	Bick, M.J, Hsia, Y, Sankaran, B, Baker, D.
Deposit date:	2020-07-04
Release date:	2020-12-23
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (3.19 Å)
Cite:	Design of multi-scale protein complexes by hierarchical building block fusion. Nat Commun, 12, 2021

6XT4

C3_HD-1069 (1BH-69) - fusion protein of helical bundle and repeat protein
Descriptor:	1BH_69
Authors:	Bick, M.J, Hsia, Y, Sankaran, B, Baker, D.
Deposit date:	2020-07-17
Release date:	2020-12-23
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (2.4 Å)
Cite:	Design of multi-scale protein complexes by hierarchical building block fusion. Nat Commun, 12, 2021

6XSS

CryoEM structure of designed helical fusion protein C4_nat_HFuse-7900
Descriptor:	C4_nat_HFuse-7900
Authors:	Redler, R.L, Edman, N.I, Baker, D, Ekiert, D, Bhabha, G.
Deposit date:	2020-07-16
Release date:	2020-12-23
Last modified:	2024-03-06
Method:	ELECTRON MICROSCOPY (3.7 Å)
Cite:	Design of multi-scale protein complexes by hierarchical building block fusion. Nat Commun, 12, 2021

8VC8

Crystal structure of heme-loaded design: HEM_3.C9
Descriptor:	HEM_3.C9, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:	Kalvet, I, Bera, A.K, Baker, D.
Deposit date:	2023-12-13
Release date:	2024-03-20
Last modified:	2024-05-01
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Generalized biomolecular modeling and design with RoseTTAFold All-Atom. Science, 384, 2024

8TL7

CryoEM Structure of a Computationally Designed T3 Tetrahedral Nanocage
Descriptor:	Computationally designed protein
Authors:	Weidle, C, Borst, A.J.
Deposit date:	2023-07-26
Release date:	2024-03-13
Last modified:	2024-04-10
Method:	ELECTRON MICROSCOPY (4.05 Å)
Cite:	Blueprinting extendable nanomaterials with standardized protein blocks. Nature, 627, 2024

7UWY

NMR solution structure of the De novo designed small beta-barrel protein 29_bp_sh3
Descriptor:	De novo designed small beta-barrel protein 29_bp_sh3
Authors:	Peterson, F.C, Kim, D.E, Jensen, D.R, Saleem, A, Chow, C.M, Volkman, B.F, Baker, D.
Deposit date:	2022-05-04
Release date:	2023-03-22
Last modified:	2024-05-15
Method:	SOLUTION NMR
Cite:	De novo design of small beta barrel proteins. Proc.Natl.Acad.Sci.USA, 120, 2023

7UWZ

NMR solution structure of the De novo designed small beta-barrel protein 33_bp_sh3
Descriptor:	De novo designed small beta-barrel protein 33_bp_sh3
Authors:	Peterson, F.C, Kim, D.E, Jensen, D.R, Saleem, A, Chow, C.M, Volkman, B.F, Baker, D.
Deposit date:	2022-05-04
Release date:	2023-03-22
Last modified:	2024-05-15
Method:	SOLUTION NMR
Cite:	De novo design of small beta barrel proteins. Proc.Natl.Acad.Sci.USA, 120, 2023

7UR7

17_bp_sh3, a small beta-barrel de novo designed protein
Descriptor:	17_bp_sh3
Authors:	Bera, A.K, Kim, D, Baker, D.
Deposit date:	2022-04-21
Release date:	2023-03-22
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (1.21 Å)
Cite:	De novo design of small beta barrel proteins. Proc.Natl.Acad.Sci.USA, 120, 2023

7RKC

Computationally designed tunable C2 symmetric tandem repeat homodimer, D_3_633
Descriptor:	ACETATE ION, D_3_633
Authors:	Kennedy, M.A, Stoddard, B.L, Hicks, D.R, Bera, A.K.
Deposit date:	2021-07-22
Release date:	2022-05-18
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (2.35 Å)
Cite:	De novo design of protein homodimers containing tunable symmetric protein pockets. Proc.Natl.Acad.Sci.USA, 119, 2022

7UNJ

De novo designed chlorophyll dimer protein with Zn pheophorbide a methyl ester matching geometry of purple bacterial special pair, SP1-ZnPPaM
Descriptor:	1,2-ETHANEDIOL, SP1-ZnPPaM designed chlorophyll dimer protein, SULFATE ION, ...
Authors:	Kennedy, M.A, Stoddard, B.L, Ennist, N.M.
Deposit date:	2022-04-11
Release date:	2023-04-19
Last modified:	2024-06-12
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	De novo design of proteins housing excitonically coupled chlorophyll special pairs. Nat.Chem.Biol., 2024

7UNH

De novo designed chlorophyll dimer protein in apo state, SP2
Descriptor:	1,2-ETHANEDIOL, SP2 designed chlorophyll dimer protein
Authors:	Kennedy, M.A, Stoddard, B.L, Ennist, N.M.
Deposit date:	2022-04-11
Release date:	2023-04-19
Last modified:	2024-06-12
Method:	X-RAY DIFFRACTION (2.4 Å)
Cite:	De novo design of proteins housing excitonically coupled chlorophyll special pairs. Nat.Chem.Biol., 2024

7UNI

De novo designed chlorophyll dimer protein with Zn pheophorbide a methyl ester, SP2-ZnPPaM
Descriptor:	1,2-ETHANEDIOL, PHOSPHATE ION, SP2-ZnPPaM designed chlorophyll dimer protein, ...
Authors:	Kennedy, M.A, Stoddard, B.L, Ennist, N.M.
Deposit date:	2022-04-11
Release date:	2023-04-19
Last modified:	2024-06-12
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	De novo design of proteins housing excitonically coupled chlorophyll special pairs. Nat.Chem.Biol., 2024

7UR8

170_h_ob, a small beta-barrel de novo designed protein
Descriptor:	170_h_ob
Authors:	Bera, A.K, Kim, D, Baker, D.
Deposit date:	2022-04-21
Release date:	2023-03-22
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (1.5 Å)
Cite:	De novo design of small beta barrel proteins. Proc.Natl.Acad.Sci.USA, 120, 2023

7M0Q

Crystal structure of deep network hallucinated protein 0738_mod
Descriptor:	Network hallucinated protein 0738_mod
Authors:	Pellock, S.J, Bera, A.K, Anishchenko, I, Baker, D.
Deposit date:	2021-03-11
Release date:	2021-12-29
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (2.4 Å)
Cite:	De novo protein design by deep network hallucination. Nature, 600, 2021

6X1K

Solution NMR structure of de novo designed TMB2.3
Descriptor:	De novo designed transmembrane beta-barrel TMB2.3
Authors:	Liang, B, Vorobieva, A.A, Chow, C.M, Baker, D, Tamm, L.K.
Deposit date:	2020-05-19
Release date:	2021-02-17
Last modified:	2024-05-15
Method:	SOLUTION NMR
Cite:	De novo design of transmembrane beta barrels. Science, 371, 2021

7M5T

Solution NMR structure of de novo designed protein 0515
Descriptor:	De novo designed protein 0515
Authors:	Ramelot, T.A, Hao, J, Baker, D, Montelione, G.T.
Deposit date:	2021-03-24
Release date:	2021-12-15
Last modified:	2024-05-15
Method:	SOLUTION NMR
Cite:	De novo protein design by deep network hallucination. Nature, 600, 2021

8CWY

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	T32-15-1, T32-15-2
Authors:	Li, Z, Borst, A.J, Baker, D.
Deposit date:	2022-05-19
Release date:	2023-11-01
Last modified:	2023-12-20
Method:	ELECTRON MICROSCOPY (3.34 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8CUS

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	I432-1(NaCl) Chain A, I432-1(NaCl) Chain B
Authors:	Bera, A.K, Li, Z, Baker, D.
Deposit date:	2022-05-17
Release date:	2023-11-01
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (3.98 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8CUT

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	I432-1(Imd) Chain A, I432-1(Imd) Chain B
Authors:	Bera, A.K, Li, Z, Baker, D.
Deposit date:	2022-05-17
Release date:	2023-11-01
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (4 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8CUW

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	F4132-1-3 Chain A, F4132-1-3 Chain B
Authors:	Bera, A.K, Li, Z, Baker, D.
Deposit date:	2022-05-17
Release date:	2023-11-01
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (3.55 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

8CUX

Accurate computational design of genetically encoded 3D protein crystals
Descriptor:	R3-1 Chain B
Authors:	Bera, A.K, Natterman, U, Baker, D.
Deposit date:	2022-05-17
Release date:	2023-11-01
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (1.85 Å)
Cite:	Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023

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