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7B81
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BU of 7b81 by Molmil
Crystal structure of Azotobacter vinelandii L-rhamnose 1-dehydrogenase (NAD bound-form)
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Short-chain dehydrogenase/reductase SDR
Authors:Yoshiwara, K, Watanabe, Y, Watanabe, S.
Deposit date:2020-12-12
Release date:2021-02-03
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.092 Å)
Cite:Crystal structure of l-rhamnose 1-dehydrogenase involved in the nonphosphorylative pathway of l-rhamnose metabolism in bacteria.
Febs Lett., 595, 2021
8J7W
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BU of 8j7w by Molmil
Cryo-EM structure of hZnT7-Fab complex in zinc state 2, determined in heterogeneous conformations- one subunit in an inward-facing zinc-bound and the other in an outward-facing zinc-bound conformation
Descriptor: Heavy chain of YN7114-08 Fab, Light chain of YN7114-08 Fab, ZINC ION, ...
Authors:Han, B.B, Inaba, K, Watanabe, S.
Deposit date:2023-04-28
Release date:2023-09-20
Method:ELECTRON MICROSCOPY (2.92 Å)
Cite:Cryo-EM structures of human zinc transporter ZnT7 reveal the mechanism of Zn 2+ uptake into the Golgi apparatus.
Nat Commun, 14, 2023
8J7X
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BU of 8j7x by Molmil
Cryo-EM structure of hZnT7DeltaHis-loop-Fab complex in zinc-unbound state, determined in outward-facing conformation
Descriptor: Heavy chain of YN7114-08 Fab, Light chain of YN7114-08 Fab, Zinc transporter 7
Authors:Han, B.B, Inaba, K, Watanabe, S.
Deposit date:2023-04-28
Release date:2023-09-20
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Cryo-EM structures of human zinc transporter ZnT7 reveal the mechanism of Zn 2+ uptake into the Golgi apparatus.
Nat Commun, 14, 2023
8J7V
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BU of 8j7v by Molmil
Cryo-EM structure of hZnT7-Fab complex in zinc-unbound state, determined in heterogeneous conformations- one subunit in an inward-facing and the other in an outward-facing conformation
Descriptor: Heavy chain of YN7114-08 Fab, Light chain of YN7114-08 Fab, Zinc transporter 7
Authors:Han, B.B, Inaba, K, Watanabe, S.
Deposit date:2023-04-28
Release date:2023-09-20
Method:ELECTRON MICROSCOPY (2.79 Å)
Cite:Cryo-EM structures of human zinc transporter ZnT7 reveal the mechanism of Zn 2+ uptake into the Golgi apparatus.
Nat Commun, 14, 2023
8J7U
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BU of 8j7u by Molmil
Cryo-EM structure of hZnT7-Fab complex in zinc-bound state, determined in outward-facing conformation
Descriptor: Heavy chain of YN7114-08 Fab, Light chain of YN7114-08 Fab, ZINC ION, ...
Authors:Han, B.B, Inaba, K, Watanabe, S.
Deposit date:2023-04-28
Release date:2023-09-20
Method:ELECTRON MICROSCOPY (3.12 Å)
Cite:Cryo-EM structures of human zinc transporter ZnT7 reveal the mechanism of Zn 2+ uptake into the Golgi apparatus.
Nat Commun, 14, 2023
8J80
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BU of 8j80 by Molmil
Cryo-EM structure of hZnT7-Fab complex in zinc state 1, determined in heterogeneous conformations- one subunit in an inward-facing zinc-bound and the other in an outward-facing zinc-unbound conformation
Descriptor: Heavy chain of YN7114-08 Fab, Light chain of YN7114-08 Fab, ZINC ION, ...
Authors:Han, B.B, Inaba, K, Watanabe, S.
Deposit date:2023-04-28
Release date:2023-09-20
Method:ELECTRON MICROSCOPY (2.68 Å)
Cite:Cryo-EM structures of human zinc transporter ZnT7 reveal the mechanism of Zn 2+ uptake into the Golgi apparatus.
Nat Commun, 14, 2023
8J7T
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BU of 8j7t by Molmil
Cryo-EM structure of hZnT7-Fab complex in zinc-unbound state, determined in outward-facing conformation
Descriptor: Heavy chain of YN7114-08 Fab, Light chain of YN7114-08 Fab, Zinc transporter 7
Authors:Han, B.B, Inaba, K, Watanabe, S.
Deposit date:2023-04-28
Release date:2023-09-20
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:Cryo-EM structures of human zinc transporter ZnT7 reveal the mechanism of Zn 2+ uptake into the Golgi apparatus.
Nat Commun, 14, 2023
8J7Y
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BU of 8j7y by Molmil
Cryo-EM structure of hZnT7DeltaHis-loop-Fab complex in zinc-bound state, determined in outward-facing conformation
Descriptor: Heavy chain of YN7114-08 Fab, Light chain of YN7114-08 Fab, ZINC ION, ...
Authors:Han, B.B, Inaba, K, Watanabe, S.
Deposit date:2023-04-28
Release date:2023-09-20
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Cryo-EM structures of human zinc transporter ZnT7 reveal the mechanism of Zn 2+ uptake into the Golgi apparatus.
Nat Commun, 14, 2023
7X9U
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BU of 7x9u by Molmil
Type-II KH motif of human mitochondrial RbfA
Descriptor: Putative ribosome-binding factor A, mitochondrial
Authors:Kuwasako, K, Suzuki, S, Furue, M, Takizawa, M, Takahashi, M, Tsuda, K, Nagata, T, Watanabe, S, Tanaka, A, Kobayashi, N, Kigawa, T, Guntert, P, Shirouzu, M, Yokoyama, S, Muto, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2022-03-16
Release date:2023-01-25
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:1 H, 13 C, and 15 N resonance assignments and solution structures of the KH domain of human ribosome binding factor A, mtRbfA, involved in mitochondrial ribosome biogenesis.
Biomol.Nmr Assign., 16, 2022
2ROZ
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BU of 2roz by Molmil
Structure of the C-terminal PID Domain of Fe65L1 Complexed with the Cytoplasmic Tail of APP Reveals a Novel Peptide Binding Mode
Descriptor: Amyloid beta A4 precursor protein-binding family B member 2, peptide from Amyloid beta A4 protein
Authors:Li, H, Koshiba, S, Tochio, N, Watanabe, S, Harada, T, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-04-25
Release date:2008-07-22
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structure of the C-terminal phosphotyrosine interaction domain of Fe65L1 complexed with the cytoplasmic tail of amyloid precursor protein reveals a novel peptide binding mode
J.Biol.Chem., 283, 2008
1SBF
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BU of 1sbf by Molmil
SOYBEAN AGGLUTININ
Descriptor: CALCIUM ION, MANGANESE (II) ION, SOYBEAN AGGLUTININ, ...
Authors:Olsen, L.R, Dessen, A, Gupta, D, Sabesan, S, Brewer, C.F, Sacchettini, J.C.
Deposit date:1997-10-21
Release date:1998-04-22
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:X-ray crystallographic studies of unique cross-linked lattices between four isomeric biantennary oligosaccharides and soybean agglutinin.
Biochemistry, 36, 1997
2RIK
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BU of 2rik by Molmil
I-band fragment I67-I69 from titin
Descriptor: Titin
Authors:Marino, M, von Castelmur, E, Labeit, D, Labeit, S, Mayans, O.
Deposit date:2007-10-11
Release date:2008-01-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A regular pattern of Ig super-motifs defines segmental flexibility as the elastic mechanism of the titin chain
Proc.Natl.Acad.Sci.Usa, 105, 2008
1SBE
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BU of 1sbe by Molmil
SOYBEAN AGGLUTININ FROM GLYCINE MAX
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, MANGANESE (II) ION, ...
Authors:Dessen, A, Olsen, L.R, Gupta, D, Sabesan, S, Sacchettini, J.C, Brewer, C.F.
Deposit date:1995-07-13
Release date:1998-04-22
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:X-ray crystallographic studies of unique cross-linked lattices between four isomeric biantennary oligosaccharides and soybean agglutinin.
Biochemistry, 36, 1997
1SBD
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BU of 1sbd by Molmil
SOYBEAN AGGLUTININ COMPLEXED WITH 2,4-PENTASACCHARIDE
Descriptor: CALCIUM ION, MANGANESE (II) ION, SOYBEAN AGGLUTININ, ...
Authors:Dessen, A, Olsen, L.R, Gupta, D, Sabesan, S, Brewer, C.F, Sacchettini, J.C.
Deposit date:1995-07-13
Release date:1998-04-22
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:X-ray crystallographic studies of unique cross-linked lattices between four isomeric biantennary oligosaccharides and soybean agglutinin.
Biochemistry, 36, 1997
2RJM
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BU of 2rjm by Molmil
3Ig structure of titin domains I67-I69 E-to-A mutated variant
Descriptor: Titin
Authors:von Castelmur, E, Marino, M, Labeit, D, Labeit, S, Mayans, O.
Deposit date:2007-10-15
Release date:2008-01-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:A regular pattern of Ig super-motifs defines segmental flexibility as the elastic mechanism of the titin chain
Proc.Natl.Acad.Sci.Usa, 105, 2008
2RRF
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BU of 2rrf by Molmil
The solution structure of the C-terminal region of Zinc finger FYVE domain-containing protein 21
Descriptor: Zinc finger FYVE domain-containing protein 21
Authors:Koshiba, S, Tomizawa, T, Hayashi, F, Tochio, N, Harada, T, Watanabe, S, Kigawa, T, Yokoyama, S.
Deposit date:2010-08-03
Release date:2011-08-03
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:ZF21 protein, a regulator of the disassembly of focal adhesions and cancer metastasis, contains a novel noncanonical pleckstrin homology domain
J.Biol.Chem., 286, 2011
5YXY
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BU of 5yxy by Molmil
Crystal structure of the HyhL-HypA complex (form I)
Descriptor: Cytosolic NiFe-hydrogenase, alpha subunit, Probable hydrogenase nickel incorporation protein HypA, ...
Authors:Kwon, S, Watanabe, S, Nishitani, Y, Miki, K.
Deposit date:2017-12-07
Release date:2018-06-20
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.299 Å)
Cite:Crystal structures of a [NiFe] hydrogenase large subunit HyhL in an immature state in complex with a Ni chaperone HypA.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5IJA
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BU of 5ija by Molmil
[NiFe] hydrogenase maturation protease HybD from Thermococcus kodakarensis
Descriptor: Hydrogenase-specific maturation endopeptidase
Authors:Kwon, S, Nishitani, Y, Watanabe, S, Miki, K.
Deposit date:2016-03-01
Release date:2016-06-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Crystal structure of a [NiFe] hydrogenase maturation protease HybD from Thermococcus kodakarensis KOD1
Proteins, 84, 2016
5YY0
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BU of 5yy0 by Molmil
Crystal structure of the HyhL-HypA complex (form II)
Descriptor: Cytosolic NiFe-hydrogenase, alpha subunit, Probable hydrogenase nickel incorporation protein HypA, ...
Authors:Kwon, S, Watanabe, S, Nishitani, Y, Miki, K.
Deposit date:2017-12-07
Release date:2018-06-20
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.243 Å)
Cite:Crystal structures of a [NiFe] hydrogenase large subunit HyhL in an immature state in complex with a Ni chaperone HypA.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
2RNL
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BU of 2rnl by Molmil
Solution structure of the EGF-like domain from human Amphiregulin
Descriptor: Amphiregulin
Authors:Qin, X, Hayashi, F, Terada, T, Shirouzu, M, Watanabe, S, Kigawa, T, Yabuta, N, Nojima, H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-01-11
Release date:2009-01-20
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution structure of the EGF-like domain from human Amphiregulin
To be Published
2YSA
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BU of 2ysa by Molmil
Solution structure of the zinc finger CCHC domain from the human retinoblastoma-binding protein 6 (Retinoblastoma-binding Q protein 1, RBQ-1)
Descriptor: Retinoblastoma-binding protein 6, ZINC ION
Authors:Ohnishi, S, Sato, M, Tochio, N, Koshiba, S, Harada, T, Watanabe, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-03
Release date:2007-10-09
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the zinc finger CCHC domain from the human retinoblastoma-binding protein 6 (Retinoblastoma-binding Q protein 1, RBQ-1)
To be Published
2YSC
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BU of 2ysc by Molmil
Solution structure of the WW domain from the human amyloid beta A4 precursor protein-binding family B member 3, APBB3
Descriptor: Amyloid beta A4 precursor protein-binding family B member 3
Authors:Ohnishi, S, Yoneyama, M, Koshiba, S, Harada, T, Watanabe, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-03
Release date:2008-04-08
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the WW domain from the human amyloid beta A4 precursor protein-binding family B member 3, APBB3
To be Published
2YSI
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BU of 2ysi by Molmil
Solution structure of the first WW domain from the mouse transcription elongation regulator 1, transcription factor CA150
Descriptor: Transcription elongation regulator 1
Authors:Ohnishi, S, Li, H, Koshiba, S, Harada, T, Watanabe, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-03
Release date:2007-10-09
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the first WW domain from the mouse transcription elongation regulator 1, transcription factor CA150
To be Published
2YSE
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BU of 2yse by Molmil
Solution structure of the second WW domain from the human membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1. MAGI-1
Descriptor: Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1
Authors:Ohnishi, S, Sato, M, Koshiba, S, Harada, T, Watanabe, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-03
Release date:2007-10-09
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the second WW domain from the human membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1. MAGI-1
To be Published
2YSD
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BU of 2ysd by Molmil
Solution structure of the first WW domain from the human membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1. MAGI-1
Descriptor: Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1
Authors:Ohnishi, S, Tochio, N, Koshiba, S, Harada, T, Watanabe, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-03
Release date:2007-10-09
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the first WW domain from the human membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1. MAGI-1
To be Published

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