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2XAX
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Ribonucleotide reductase Y730NO2Y and Y731A modified R1 subunit of E. coli
分子名称: RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT ALPHA, RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT BETA
著者Yokoyama, K, Uhlin, U, Stubbe, J.
登録日2010-04-01
公開日2010-04-14
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Site-Specific Incorporation of 3-Nitrotyrosine as a Probe of Pk(A) Perturbation of Redox-Active Tyrosines in Ribonucleotide Reductase.
J.Am.Chem.Soc., 132, 2010
2XAZ
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Ribonucleotide reductase Y730NO2Y and C439S modified R1 subunit of E. coli
分子名称: RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT ALPHA, RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT BETA
著者Yokoyama, K, Uhlin, U, Stubbe, J.
登録日2010-04-01
公開日2010-04-14
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Site-Specific Incorporation of 3-Nitrotyrosine as a Probe of Pk(A) Perturbation of Redox-Active Tyrosines in Ribonucleotide Reductase.
J.Am.Chem.Soc., 132, 2010
2XAW
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Ribonucleotide reductase Y730NO2Y and Y731F modified R1 subunit of E. coli
分子名称: RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT ALPHA, RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT BETA
著者Yokoyama, K, Uhlin, U, Stubbe, J.
登録日2010-03-31
公開日2010-04-14
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Site-Specific Incorporation of 3-Nitrotyrosine as a Probe of Pk(A) Perturbation of Redox-Active Tyrosines in Ribonucleotide Reductase.
J.Am.Chem.Soc., 132, 2010
2X0X
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Ribonucleotide reductase R1 subunit of E. coli to 2.3 A resolution
分子名称: RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT ALPHA, RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT BETA, SULFATE ION
著者Yokoyama, K, Uhlin, U, Stubbe, J.
登録日2009-12-18
公開日2010-01-26
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Site-Specific Incorporation of 3-Nitrotyrosine as a Probe of Pk(A) Perturbation of Redox-Active Tyrosines in Ribonucleotide Reductase.
J.Am.Chem.Soc., 132, 2010
2XAV
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Ribonucleotide reductase Y731NO2Y and Y730F modified R1 subunit of E. coli
分子名称: RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT ALPHA, RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT BETA
著者Yokoyama, K, Uhlin, U, Stubbe, J.
登録日2010-03-31
公開日2010-04-14
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Site-Specific Incorporation of 3-Nitrotyrosine as a Probe of Pk(A) Perturbation of Redox-Active Tyrosines in Ribonucleotide Reductase.
J.Am.Chem.Soc., 132, 2010
2XAP
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Ribonucleotide reductase Y731NO2Y modified R1 subunit of E. coli to 2. 1 A resolution
分子名称: RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT ALPHA, RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT BETA
著者Yokoyama, K, Uhlin, U, Stubbe, J.
登録日2010-03-31
公開日2010-04-14
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Site-Specific Incorporation of 3-Nitrotyrosine as a Probe of Pk(A) Perturbation of Redox-Active Tyrosines in Ribonucleotide Reductase.
J.Am.Chem.Soc., 132, 2010
2XOF
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Ribonucleotide reductase Y122NO2Y modified R2 subunit of E. coli
分子名称: MU-OXO-DIIRON, RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT BETA
著者Yokoyama, K, Uhlin, U, Stubbe, J.
登録日2010-08-15
公開日2010-08-25
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献A Hot Oxidant, 3-No(2)Y(122) Radical, Unmasks Conformational Gating in Ribonucleotide Reductase.
J.Am.Chem.Soc., 132, 2010
2XAK
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BU of 2xak by Molmil
Ribonucleotide reductase Y730NO2Y modified R1 subunit of E. coli
分子名称: RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT ALPHA, RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT BETA
著者Yokoyama, K, Uhlin, U, Stubbe, J.
登録日2010-03-31
公開日2010-04-14
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Site-Specific Incorporation of 3-Nitrotyrosine as a Probe of Pk(A) Perturbation of Redox-Active Tyrosines in Ribonucleotide Reductase.
J.Am.Chem.Soc., 132, 2010
2XAY
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BU of 2xay by Molmil
Ribonucleotide reductase Y730NO2Y and C439A modified R1 subunit of E. coli
分子名称: RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT ALPHA, RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 SUBUNIT BETA
著者Yokoyama, K, Uhlin, U, Stubbe, J.
登録日2010-04-01
公開日2010-04-14
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Site-Specific Incorporation of 3-Nitrotyrosine as a Probe of Pk(A) Perturbation of Redox-Active Tyrosines in Ribonucleotide Reductase.
J.Am.Chem.Soc., 132, 2010
4V4O
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BU of 4v4o by Molmil
Crystal Structure of the Chaperonin Complex Cpn60/Cpn10/(ADP)7 from Thermus Thermophilus
分子名称: ADENOSINE-5'-DIPHOSPHATE, DIMETHYL SULFOXIDE, MAGNESIUM ION, ...
著者Shimamura, T, Koike-Takeshita, A, Yokoyama, K, Masui, R, Murai, N, Yoshida, M, Taguchi, H, Iwata, S.
登録日2004-05-23
公開日2014-07-09
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of the native chaperonin complex from Thermus thermophilus revealed unexpected asymmetry at the cis-cavity
STRUCTURE, 12, 2004
2VPZ
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BU of 2vpz by Molmil
Polysulfide reductase native structure
分子名称: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, HYPOTHETICAL MEMBRANE SPANNING PROTEIN, IRON/SULFUR CLUSTER, ...
著者Jormakka, M, Yokoyama, K, Yano, T, Tamakoshi, M, Akimoto, S, Shimamura, T, Curmi, P, Iwata, S.
登録日2008-03-09
公開日2008-06-10
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Molecular Mechanism of Energy Conservation in Polysulfide Respiration
Nat.Struct.Mol.Biol., 15, 2008
7STO
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BU of 7sto by Molmil
Chitin Synthase 2 from Candida albicans bound to polyoxin D
分子名称: 1,2-Distearoyl-sn-glycerophosphoethanolamine, 1-{(2R,3R,4S,5R)-5-[(S)-{[(2S,3S,4S)-2-amino-5-(carbamoyloxy)-3,4-dihydroxypentanoyl]amino}(carboxy)methyl]-3,4-dihydroxyoxolan-2-yl}-2,4-dioxo-1,2,3,4-tetrahydropyrimidine-5-carboxylic acid (non-preferred name), Chitin synthase
著者Ren, Z, Chhetri, A, Lee, S, Yokoyama, K.
登録日2021-11-14
公開日2022-07-13
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (3.15 Å)
主引用文献Structural basis for inhibition and regulation of a chitin synthase from Candida albicans.
Nat.Struct.Mol.Biol., 29, 2022
7STM
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Chitin Synthase 2 from Candida albicans bound to UDP-GlcNAc
分子名称: 1,2-Distearoyl-sn-glycerophosphoethanolamine, Chitin synthase, MAGNESIUM ION, ...
著者Ren, Z, Chhetri, A, Lee, S, Yokoyama, K.
登録日2021-11-14
公開日2022-07-13
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (3.02 Å)
主引用文献Structural basis for inhibition and regulation of a chitin synthase from Candida albicans.
Nat.Struct.Mol.Biol., 29, 2022
7STN
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Chitin Synthase 2 from Candida albicans bound to Nikkomycin Z
分子名称: (2S)-{[(2S,3S,4S)-2-amino-4-hydroxy-4-(5-hydroxypyridin-2-yl)-3-methylbutanoyl]amino}[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxyoxolan-2-yl]acetic acid (non-preferred name), 1,2-Distearoyl-sn-glycerophosphoethanolamine, Chitin synthase
著者Ren, Z, Chhetri, A, Lee, S, Yokoyama, K.
登録日2021-11-14
公開日2022-07-13
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (3.19 Å)
主引用文献Structural basis for inhibition and regulation of a chitin synthase from Candida albicans.
Nat.Struct.Mol.Biol., 29, 2022
7STL
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BU of 7stl by Molmil
Chitin Synthase 2 from Candida albicans at the apo state
分子名称: 1,2-Distearoyl-sn-glycerophosphoethanolamine, Chitin synthase
著者Ren, Z, Chhetri, A, Lee, S, Yokoyama, K.
登録日2021-11-14
公開日2022-07-13
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (2.95 Å)
主引用文献Structural basis for inhibition and regulation of a chitin synthase from Candida albicans.
Nat.Struct.Mol.Biol., 29, 2022
3GQB
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BU of 3gqb by Molmil
Crystal Structure of the A3B3 complex from V-ATPase
分子名称: V-type ATP synthase alpha chain, V-type ATP synthase beta chain
著者Meher, M, Akimoto, S, Iwata, M, Nagata, K, Hori, Y, Yoshida, M, Yokoyama, S, Iwata, S, Yokoyama, K.
登録日2009-03-24
公開日2009-11-24
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of A(3)B(3) complex of V-ATPase from Thermus thermophilus.
Embo J., 28, 2009
1R5Z
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BU of 1r5z by Molmil
Crystal Structure of Subunit C of V-ATPase
分子名称: V-type ATP synthase subunit C
著者Iwata, M, Imamura, H, Stambouli, E, Ikeda, C, Tamakoshi, M, Nagata, K, Makyio, H, Hankamer, B, Barber, J, Yoshida, M, Yokoyama, K, Iwata, S.
登録日2003-10-14
公開日2004-01-13
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal structure of a central stalk subunit C and reversible association/dissociation of vacuole-type ATPase.
Proc.Natl.Acad.Sci.Usa, 101, 2004
1G0D
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BU of 1g0d by Molmil
CRYSTAL STRUCTURE OF RED SEA BREAM TRANSGLUTAMINASE
分子名称: PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE, SULFATE ION
著者Noguchi, K, Ishikawa, K, Yokoyama, K, Ohtsuka, T, Nio, N, Suzuki, E.
登録日2000-10-06
公開日2001-05-23
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of red sea bream transglutaminase.
J.Biol.Chem., 276, 2001
4PYA
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BU of 4pya by Molmil
MoaC K51A in complex with 3',8-cH2GTP
分子名称: (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate, 1,2-ETHANEDIOL, Molybdenum cofactor biosynthesis protein MoaC
著者Tonthat, N.K, Hover, B.M, Yokoyama, K, Schumacher, M.A.
登録日2014-03-26
公開日2015-04-29
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.789 Å)
主引用文献Mechanism of pyranopterin ring formation in molybdenum cofactor biosynthesis.
Proc.Natl.Acad.Sci.USA, 112, 2015
4PYD
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MoaC in complex with cPMP crystallized in space group P212121
分子名称: (2R,4AR,5AR,11AR,12AS)-8-AMINO-2-HYDROXY-4A,5A,9,11,11A,12A-HEXAHYDRO[1,3,2]DIOXAPHOSPHININO[4',5':5,6]PYRANO[3,2-G]PTERIDINE-10,12(4H,6H)-DIONE 2-OXIDE, 1,2-ETHANEDIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, ...
著者Tonthat, N.K, Hover, B.M, Yokoyama, K, Schumacher, M.A.
登録日2014-03-26
公開日2015-04-29
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (3.186 Å)
主引用文献Mechanism of pyranopterin ring formation in molybdenum cofactor biosynthesis.
Proc.Natl.Acad.Sci.USA, 112, 2015
7XKH
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Nucleotide-depleted F1 domain of FoF1-ATPase from Bacillus PS3, state1
分子名称: ATP synthase epsilon chain, ATP synthase gamma chain, ATP synthase subunit alpha, ...
著者Nakano, A, Kishikawa, J, Nakanishi, A, Mitsuoka, K, Yokoyama, K.
登録日2022-04-19
公開日2022-09-21
最終更新日2023-10-11
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural basis of unisite catalysis of bacterial F 0 F 1 -ATPase.
Pnas Nexus, 1, 2022
7XKO
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F1 domain of epsilon C-terminal domain deleted FoF1 from Bacillus PS3,state1,nucleotide depeleted
分子名称: ATP synthase gamma chain, ATP synthase subunit alpha, ATP synthase subunit beta, ...
著者Nakano, A, Kishikawa, J, Nakanishi, A, Mitsuoka, K, Yokoyama, K.
登録日2022-04-20
公開日2022-09-21
最終更新日2023-10-11
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural basis of unisite catalysis of bacterial F 0 F 1 -ATPase.
Pnas Nexus, 1, 2022
7XKQ
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BU of 7xkq by Molmil
F1 domain of FoF1-ATPase with the down form of epsilon subunit from Bacillus PS3
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ...
著者Nakano, A, Kishikawa, J, Nakanishi, A, Mitsuoka, K, Yokoyama, K.
登録日2022-04-20
公開日2022-09-21
最終更新日2023-10-11
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural basis of unisite catalysis of bacterial F 0 F 1 -ATPase.
Pnas Nexus, 1, 2022
7XKR
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F1 domain of FoF1-ATPase with the up form of epsilon subunit from Bacillus PS3
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ...
著者Nakano, A, Kishikawa, J, Nakanishi, A, Mitsuoka, K, Yokoyama, K.
登録日2022-04-20
公開日2022-09-21
最終更新日2023-10-11
実験手法ELECTRON MICROSCOPY (2.6 Å)
主引用文献Structural basis of unisite catalysis of bacterial F 0 F 1 -ATPase.
Pnas Nexus, 1, 2022
7XKP
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F1 domain of epsilon C-terminal domain deleted FoF1 from Bacillus PS3,state1,unisite condition
分子名称: ADENOSINE-5'-DIPHOSPHATE, ATP synthase gamma chain, ATP synthase subunit alpha, ...
著者Nakano, A, Kishikawa, J, Nakanishi, A, Mitsuoka, K, Yokoyama, K.
登録日2022-04-20
公開日2022-09-21
最終更新日2023-10-11
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structural basis of unisite catalysis of bacterial F 0 F 1 -ATPase.
Pnas Nexus, 1, 2022

 

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