1IWP
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![BU of 1iwp by Molmil](/molmil-images/mine/1iwp) | Glycerol Dehydratase-cyanocobalamin Complex of Klebsiella pneumoniae | 分子名称: | COBALAMIN, Glycerol Dehydratase Alpha subunit, Glycerol Dehydratase Beta subunit, ... | 著者 | Yamanishi, M, Yunoki, M, Tobimatsu, T, Toraya, T. | 登録日 | 2002-05-28 | 公開日 | 2002-10-02 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | The crystal structure of coenzyme B12-dependent glycerol dehydratase in complex with cobalamin and propane-1,2-diol. Eur.J.Biochem., 269, 2002
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1EEX
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![BU of 1eex by Molmil](/molmil-images/mine/1eex) | CRYSTAL STRUCTURE OF THE DIOL DEHYDRATASE-ADENINYLPENTYLCOBALAMIN COMPLEX FROM KLEBSIELLA OXYTOCA | 分子名称: | CO-(ADENIN-9-YL-PENTYL)-COBALAMIN, POTASSIUM ION, PROPANEDIOL DEHYDRATASE, ... | 著者 | Shibata, N, Masuda, J, Toraya, T, Morimoto, Y, Yasuoka, N. | 登録日 | 2000-02-04 | 公開日 | 2001-02-07 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | How a protein generates a catalytic radical from coenzyme B(12): X-ray structure of a diol-dehydratase-adeninylpentylcobalamin complex. Structure Fold.Des., 8, 2000
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1EGV
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![BU of 1egv by Molmil](/molmil-images/mine/1egv) | CRYSTAL STRUCTURE OF THE DIOL DEHYDRATASE-ADENINYLPENTYLCOBALAMIN COMPLEX FROM KLEBSELLA OXYTOCA UNDER THE ILLUMINATED CONDITION. | 分子名称: | CO-(ADENIN-9-YL-PENTYL)-COBALAMIN, POTASSIUM ION, PROPANEDIOL DEHYDRATASE, ... | 著者 | Masuda, J, Shibata, N, Toraya, T, Morimoto, Y, Yasuoka, N. | 登録日 | 2000-02-17 | 公開日 | 2001-02-21 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.75 Å) | 主引用文献 | How a protein generates a catalytic radical from coenzyme B(12): X-ray structure of a diol-dehydratase-adeninylpentylcobalamin complex. Structure Fold.Des., 8, 2000
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1EGM
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![BU of 1egm by Molmil](/molmil-images/mine/1egm) | CRYSTAL STRUCTURE OF DIOL DEHYDRATASE-CYANOCOBALAMIN COMPLEX AT 100K. | 分子名称: | CYANOCOBALAMIN, POTASSIUM ION, PROPANEDIOL DEHYDRATASE, ... | 著者 | Masuda, J, Shibata, N, Toraya, T, Morimoto, Y, Yasuoka, N. | 登録日 | 2000-02-15 | 公開日 | 2000-09-20 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (1.85 Å) | 主引用文献 | How a protein generates a catalytic radical from coenzyme B(12): X-ray structure of a diol-dehydratase-adeninylpentylcobalamin complex. Structure Fold.Des., 8, 2000
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1IWB
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![BU of 1iwb by Molmil](/molmil-images/mine/1iwb) | Crystal structure of diol dehydratase | 分子名称: | COBALAMIN, DIOL DEHYDRATASE alpha chain, DIOL DEHYDRATASE beta chain, ... | 著者 | Shibata, N, Masuda, J, Morimoto, Y, Yasuoka, N, Toraya, T. | 登録日 | 2002-05-01 | 公開日 | 2003-05-01 | 最終更新日 | 2024-05-29 | 実験手法 | X-RAY DIFFRACTION (1.85 Å) | 主引用文献 | Substrate-induced conformational change of a coenzyme B12-dependent enzyme: crystal structure of the substrate-free form of diol dehydratase Biochemistry, 41, 2002
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1DIO
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![BU of 1dio by Molmil](/molmil-images/mine/1dio) | DIOL DEHYDRATASE-CYANOCOBALAMIN COMPLEX FROM KLEBSIELLA OXYTOCA | 分子名称: | COBALAMIN, POTASSIUM ION, PROTEIN (DIOL DEHYDRATASE), ... | 著者 | Shibata, N, Masuda, J, Tobimatsu, T, Toraya, T, Suto, K, Morimoto, Y, Yasuoka, N. | 登録日 | 1999-01-27 | 公開日 | 2000-01-30 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | A new mode of B12 binding and the direct participation of a potassium ion in enzyme catalysis: X-ray structure of diol dehydratase. Structure Fold.Des., 7, 1999
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1UC4
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![BU of 1uc4 by Molmil](/molmil-images/mine/1uc4) | Structure of diol dehydratase complexed with (S)-1,2-propanediol | 分子名称: | AMMONIUM ION, CYANOCOBALAMIN, POTASSIUM ION, ... | 著者 | Shibata, N, Nakanishi, Y, Fukuoka, M, Yamanishi, M, Yasuoka, N, Toraya, T. | 登録日 | 2003-04-08 | 公開日 | 2003-07-22 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Structural rationalization for the lack of stereospecificity in coenzyme B12-dependent diol dehydratase J.BIOL.CHEM., 278, 2003
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1UC5
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![BU of 1uc5 by Molmil](/molmil-images/mine/1uc5) | Structure of diol dehydratase complexed with (R)-1,2-propanediol | 分子名称: | AMMONIUM ION, CYANOCOBALAMIN, POTASSIUM ION, ... | 著者 | Shibata, N, Nakanishi, Y, Fukuoka, M, Yamanishi, M, Yasuoka, N, Toraya, T. | 登録日 | 2003-04-08 | 公開日 | 2003-07-22 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Structural rationalization for the lack of stereospecificity in coenzyme B12-dependent diol dehydratase J.Biol.Chem., 278, 2003
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2D0P
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![BU of 2d0p by Molmil](/molmil-images/mine/2d0p) | Structure of diol dehydratase-reactivating factor in nucleotide free form | 分子名称: | CALCIUM ION, SULFATE ION, diol dehydratase-reactivating factor large subunit, ... | 著者 | Shibata, N, Mori, K, Hieda, N, Higuchi, Y, Yamanishi, M, Toraya, T. | 登録日 | 2005-08-05 | 公開日 | 2006-02-28 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Release of a damaged cofactor from a coenzyme B12-dependent enzyme: X-ray structures of diol dehydratase-reactivating factor Structure, 13, 2005
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2D0O
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![BU of 2d0o by Molmil](/molmil-images/mine/2d0o) | Structure of diol dehydratase-reactivating factor complexed with ADP and Mg2+ | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, SULFATE ION, ... | 著者 | Shibata, N, Mori, K, Hieda, N, Higuchi, Y, Yamanishi, M, Toraya, T. | 登録日 | 2005-08-05 | 公開日 | 2006-02-28 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Release of a damaged cofactor from a coenzyme B12-dependent enzyme: X-ray structures of diol dehydratase-reactivating factor Structure, 13, 2005
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7XRN
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![BU of 7xrn by Molmil](/molmil-images/mine/7xrn) | Ethanolamine ammonia-lyase complexed with AdoMeCbl in the presence of substrate | 分子名称: | (2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-ethyl-oxolane-3,4-diol, AMMONIUM ION, COBALAMIN, ... | 著者 | Shibata, N, Toraya, T. | 登録日 | 2022-05-10 | 公開日 | 2023-03-29 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.07 Å) | 主引用文献 | Structural Insights into the Very Low Activity of the Homocoenzyme B 12 Adenosylmethylcobalamin in Coenzyme B 12 -Dependent Diol Dehydratase and Ethanolamine Ammonia-Lyase. Chemistry, 28, 2022
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7XRM
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![BU of 7xrm by Molmil](/molmil-images/mine/7xrm) | Ethanolamine ammonia-lyase complexed with AdoMeCbl | 分子名称: | (2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-ethyl-oxolane-3,4-diol, AMMONIUM ION, COBALAMIN, ... | 著者 | Shibata, N, Toraya, T. | 登録日 | 2022-05-10 | 公開日 | 2023-03-29 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.13 Å) | 主引用文献 | Structural Insights into the Very Low Activity of the Homocoenzyme B 12 Adenosylmethylcobalamin in Coenzyme B 12 -Dependent Diol Dehydratase and Ethanolamine Ammonia-Lyase. Chemistry, 28, 2022
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7XRK
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![BU of 7xrk by Molmil](/molmil-images/mine/7xrk) | Diol dehydratase complexed with AdoMeCbl | 分子名称: | (2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-ethyl-oxolane-3,4-diol, CALCIUM ION, COBALAMIN, ... | 著者 | Shibata, N, Toraya, T. | 登録日 | 2022-05-10 | 公開日 | 2023-03-29 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Structural Insights into the Very Low Activity of the Homocoenzyme B 12 Adenosylmethylcobalamin in Coenzyme B 12 -Dependent Diol Dehydratase and Ethanolamine Ammonia-Lyase. Chemistry, 28, 2022
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7XRL
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![BU of 7xrl by Molmil](/molmil-images/mine/7xrl) | Diol dehydratase complexed with AdoMeCbl and 1,2-propanediol | 分子名称: | (2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-ethyl-oxolane-3,4-diol, AMMONIUM ION, CALCIUM ION, ... | 著者 | Shibata, N, Toraya, T. | 登録日 | 2022-05-10 | 公開日 | 2023-03-29 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.75 Å) | 主引用文献 | Structural Insights into the Very Low Activity of the Homocoenzyme B 12 Adenosylmethylcobalamin in Coenzyme B 12 -Dependent Diol Dehydratase and Ethanolamine Ammonia-Lyase. Chemistry, 28, 2022
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3AUJ
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![BU of 3auj by Molmil](/molmil-images/mine/3auj) | Structure of diol dehydratase complexed with glycerol | 分子名称: | CALCIUM ION, COBALAMIN, Diol dehydrase alpha subunit, ... | 著者 | Yamanishi, M, Kinoshita, K, Fukuoka, M, Shibata, T, Tobimatsu, T, Toraya, T. | 登録日 | 2011-02-07 | 公開日 | 2012-02-22 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Redesign of coenzyme B(12) dependent diol dehydratase to be resistant to the mechanism-based inactivation by glycerol and act on longer chain 1,2-diols Febs J., 279, 2012
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3ABQ
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![BU of 3abq by Molmil](/molmil-images/mine/3abq) | |
3ABR
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![BU of 3abr by Molmil](/molmil-images/mine/3abr) | |
3ABO
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![BU of 3abo by Molmil](/molmil-images/mine/3abo) | |
3ABS
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![BU of 3abs by Molmil](/molmil-images/mine/3abs) | |
5YRV
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![BU of 5yrv by Molmil](/molmil-images/mine/5yrv) | |
5YSR
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![BU of 5ysr by Molmil](/molmil-images/mine/5ysr) | Ethanolamine ammonia-lyase, AdoCbl/2-amino-1-propanol | 分子名称: | 5'-DEOXYADENOSINE, COBALAMIN, Ethanolamine ammonia-lyase heavy chain, ... | 著者 | Shibata, N. | 登録日 | 2017-11-14 | 公開日 | 2018-09-19 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.05 Å) | 主引用文献 | Direct Participation of a Peripheral Side Chain of a Corrin Ring in Coenzyme B12Catalysis. Angew. Chem. Int. Ed. Engl., 57, 2018
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5YRT
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![BU of 5yrt by Molmil](/molmil-images/mine/5yrt) | |
5YSH
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![BU of 5ysh by Molmil](/molmil-images/mine/5ysh) | |
5YSN
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![BU of 5ysn by Molmil](/molmil-images/mine/5ysn) | Ethanolamine ammonia-lyase, AdoCbl/substrate-free | 分子名称: | 5'-DEOXYADENOSINE, COBALAMIN, Ethanolamine ammonia-lyase heavy chain, ... | 著者 | Shibata, N. | 登録日 | 2017-11-14 | 公開日 | 2018-09-19 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.001 Å) | 主引用文献 | Direct Participation of a Peripheral Side Chain of a Corrin Ring in Coenzyme B12Catalysis. Angew. Chem. Int. Ed. Engl., 57, 2018
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3AO0
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![BU of 3ao0 by Molmil](/molmil-images/mine/3ao0) | |