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3AOH
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BU of 3aoh by Molmil
RNA polymerase-Gfh1 complex (Crystal type 1)
分子名称: Anti-cleavage anti-GreA transcription factor Gfh1, DNA (5'-D(*GP*GP*TP*CP*TP*GP*TP*AP*TP*CP*AP*CP*GP*AP*GP*CP*CP*AP*CP*CP*GP*CP*CP*GP*CP*AP*T)-3'), DNA-directed RNA polymerase subunit alpha, ...
著者Tagami, S, Sekine, S, Kumarevel, T, Yamamoto, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2010-09-28
公開日2010-12-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (4.1 Å)
主引用文献Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein
Nature, 468, 2010
3AOI
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BU of 3aoi by Molmil
RNA polymerase-Gfh1 complex (Crystal type 2)
分子名称: Anti-cleavage anti-GreA transcription factor Gfh1, DNA (5'-D(*GP*GP*TP*CP*TP*GP*TP*AP*TP*CP*AP*CP*GP*AP*GP*CP*CP*A*CP*CP*GP*CP*CP*GP*CP*AP*T)-3'), DNA-directed RNA polymerase subunit alpha, ...
著者Tagami, S, Sekine, S, Kumarevel, T, Yamamoto, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2010-09-30
公開日2010-12-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (4.3 Å)
主引用文献Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein
Nature, 468, 2010
3WOE
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BU of 3woe by Molmil
Crystal structure of P23-45 gp39 (6-109) bound to Thermus thermophilus RNA polymerase beta-flap domain
分子名称: DNA-directed RNA polymerase subunit beta, Putative uncharacterized protein
著者Tagami, S, Sekine, S, Minakhin, L, Esyunina, D, Akasaka, R, Shirouzu, M, Kulbachinskiy, A, Severinov, K, Yokoyama, S.
登録日2013-12-26
公開日2014-03-12
最終更新日2015-03-25
実験手法X-RAY DIFFRACTION (2.351 Å)
主引用文献Structural basis for promoter specificity switching of RNA polymerase by a phage factor.
Genes Dev., 28, 2014
3WOD
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BU of 3wod by Molmil
RNA polymerase-gp39 complex
分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
著者Tagami, S, Sekine, S, Minakhin, L, Esyunina, D, Akasaka, R, Shirouzu, M, Kulbachinskiy, A, Severinov, K, Yokoyama, S.
登録日2013-12-26
公開日2014-03-12
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Structural basis for promoter specificity switching of RNA polymerase by a phage factor.
Genes Dev., 28, 2014
3WOF
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BU of 3wof by Molmil
Crystal structure of P23-45 gp39 (6-132) bound to Thermus thermophilus RNA polymerase beta-flap domain
分子名称: DNA-directed RNA polymerase subunit beta, Putative uncharacterized protein
著者Tagami, S, Sekine, S, Minakhin, L, Esyunina, D, Akasaka, R, Shirouzu, M, Kulbachinskiy, A, Severinov, K, Yokoyama, S.
登録日2013-12-26
公開日2014-03-12
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.298 Å)
主引用文献Structural basis for promoter specificity switching of RNA polymerase by a phage factor.
Genes Dev., 28, 2014
8H2M
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BU of 8h2m by Molmil
gp96 RNA polymerase from P23-45 phage (crystal 1)
分子名称: Tape tail measure protein
著者Chaban, A, Sokolova, M.L, Tagami, S.
登録日2022-10-06
公開日2023-10-11
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (3.08 Å)
主引用文献Tail-tape-fused virion and non-virion RNA polymerases of a thermophilic virus with an extremely long tail.
Nat Commun, 15, 2024
8H2N
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BU of 8h2n by Molmil
gp96 RNA polymerase from P23-45 phage (crystal 2)
分子名称: MAGNESIUM ION, Tape tail measure protein
著者Chaban, A, Sokolova, M.L, Tagami, S.
登録日2022-10-06
公開日2023-10-11
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (4.41 Å)
主引用文献Tail-tape-fused virion and non-virion RNA polymerases of a thermophilic virus with an extremely long tail.
Nat Commun, 15, 2024
6JX3
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BU of 6jx3 by Molmil
Lasso peptide synthetase B1 complexed with the leader peptide
分子名称: TfuA-Leader, TfuB1, ZINC ION
著者Sumida, T, Tagami, S.
登録日2019-04-22
公開日2019-06-26
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural Basis of Leader Peptide Recognition in Lasso Peptide Biosynthesis Pathway.
Acs Chem.Biol., 14, 2019
7DXT
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BU of 7dxt by Molmil
Crystal structure of the chemically synthesized mk2h peptide homodimer
分子名称: mk2h protein
著者Yagi, S, Tagami, S.
登録日2021-01-20
公開日2021-09-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021
7DWW
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BU of 7dww by Molmil
Crystal structure of the computationally designed msDPBB_sym2 protein
分子名称: msDPBB_sym2 protein
著者Yagi, S, Schiex, T, Vucinic, J, Barbe, S, Simoncini, D, Tagami, S.
登録日2021-01-18
公開日2021-09-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.802 Å)
主引用文献Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021
7DXR
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BU of 7dxr by Molmil
Crystal structure of the mk2h peptide homodimer.
分子名称: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, SULFATE ION, mk2h protein
著者Yagi, S, Tagami, S.
登録日2021-01-20
公開日2021-09-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021
7DXZ
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BU of 7dxz by Molmil
Crystal structure of the chemically synthesized mk2h_deltaMILPYS peptide homodimer in complex with malonate
分子名称: MALONIC ACID, mk2h_deltaMILPYS protein
著者Yagi, S, Tagami, S.
登録日2021-01-20
公開日2021-09-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021
7DXY
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BU of 7dxy by Molmil
Crystal structure of the chemically synthesized mk2h_deltaMILPS peptide homodimer
分子名称: mk2h_deltaMILPS
著者Yagi, S, Tagami, S.
登録日2021-01-20
公開日2021-09-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021
7DXX
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BU of 7dxx by Molmil
Crystal structure of the mk2h_deltaMILPS peptide homodimer
分子名称: MALONIC ACID, mk2h_deltaMILPS protein
著者Yagi, S, Tagami, S.
登録日2021-01-20
公開日2021-09-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.403 Å)
主引用文献Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021
7DXW
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BU of 7dxw by Molmil
Crystal structure of the mk2h_deltaMIL peptide homodimer
分子名称: SULFATE ION, mk2h_deltaMIL protein
著者Yagi, S, Tagami, S.
登録日2021-01-20
公開日2021-09-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.509 Å)
主引用文献Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021
7DXS
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BU of 7dxs by Molmil
Crystal structure of the ap1h peptide homodimer.
分子名称: SULFATE ION, ap1h protein
著者Yagi, S, Tagami, S.
登録日2021-01-20
公開日2021-09-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.102 Å)
主引用文献Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021
7DYC
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BU of 7dyc by Molmil
Crystal structure of the chemically synthesized mk2h_deltaMILPYS peptide homodimer in complex with malate
分子名称: (2S)-2-hydroxybutanedioic acid, D-MALATE, mk2h_deltaMILPYS protein
著者Yagi, S, Tagami, S.
登録日2021-01-21
公開日2021-09-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021
7DXV
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BU of 7dxv by Molmil
Crystal structure of the mk2h_deltaY peptide homodimer
分子名称: mk2h_dY protein
著者Yagi, S, Tagami, S.
登録日2021-01-20
公開日2021-09-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.301 Å)
主引用文献Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021
7DXU
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BU of 7dxu by Molmil
Crystal structure of the mk2h_deltaP peptide homodimer
分子名称: SULFATE ION, mk2h_dP protein
著者Yagi, S, Tagami, S.
登録日2021-01-20
公開日2021-09-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.314 Å)
主引用文献Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021
7DBO
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BU of 7dbo by Molmil
DPBB domain of VCP-like ATPase from Thermoplasma acidophilum
分子名称: SULFATE ION, VCP-like ATPase
著者Yagi, S, Tagami, S.
登録日2020-10-21
公開日2021-09-29
最終更新日2021-11-17
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021
7DG7
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BU of 7dg7 by Molmil
DPBB domain of VCP-like ATPase from Methanopyrus kandleri
分子名称: ATPase of the AAA+ class, IMIDAZOLE, ZINC ION
著者Yagi, S, Tagami, S.
登録日2020-11-11
公開日2021-09-29
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.604 Å)
主引用文献Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021
7DG9
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BU of 7dg9 by Molmil
DPBB domain of VCP-like ATPase from Aeropyrum pernix
分子名称: Cell division control protein 48, AAA family, ZINC ION
著者Yagi, S, Tagami, S.
登録日2020-11-11
公開日2021-09-29
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.602 Å)
主引用文献Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021
7DU7
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BU of 7du7 by Molmil
Crystal structure of the rationally designed mkDPBB_sym1 protein
分子名称: mkDPBB_sym1 protein
著者Yagi, S, Tagami, S.
登録日2021-01-08
公開日2021-09-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.201 Å)
主引用文献Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021
7DVC
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BU of 7dvc by Molmil
Crystal structure of the computationally designed reDPBB_sym1 protein
分子名称: ACETATE ION, CHLORIDE ION, reDPBB_sym1 protein
著者Yagi, S, Tagami, S, Padhi, A.K, Zhang, K.Y.J.
登録日2021-01-13
公開日2021-09-29
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.705 Å)
主引用文献Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021
7DVH
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BU of 7dvh by Molmil
Crystal structure of the computationally designed reDPBB_sym4 protein
分子名称: reDPBB_sym4 protein
著者Yagi, S, Tagami, S, Padhi, A.K, Zhang, K.Y.J.
登録日2021-01-13
公開日2021-09-29
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.698 Å)
主引用文献Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
J.Am.Chem.Soc., 143, 2021

 

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