Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8WZV
DownloadVisualize
BU of 8wzv by Molmil
SFX structure of an Mn-carbonyl complex immobilized in hen egg white lysozyme microcrystals, 1 microsecond after photoexcitation with 40 microJoules laser intensity at RT.
分子名称: CHLORIDE ION, Lysozyme C, SODIUM ION, ...
著者Maity, B, Shoji, M, Luo, F, Nakane, T, Abe, S, Owada, S, Kang, J, Tono, K, Tanaka, R, Thuc, T.T, Kojima, M, Hishikawa, Y, Tanaka, J, Tian, J, Noya, H, Nakasuji, Y, Asanuma, A, Yao, X, Iwata, S, Shigeta, Y, Nango, E, Ueno, T.
登録日2023-11-02
公開日2024-07-31
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Real-time observation of a metal complex-driven reaction intermediate using a porous protein crystal and serial femtosecond crystallography.
Nat Commun, 15, 2024
8WZT
DownloadVisualize
BU of 8wzt by Molmil
SFX structure of an Mn-carbonyl complex immobilized in hen egg white lysozyme microcrystals, 1 microsecond after photoexcitation at RT.
分子名称: CHLORIDE ION, Lysozyme C, SODIUM ION, ...
著者Maity, B, Shoji, M, Luo, F, Nakane, T, Abe, S, Owada, S, Kang, J, Tono, K, Tanaka, R, Thuc, T.T, Kojima, M, Hishikawa, Y, Tanaka, J, Tian, J, Noya, H, Nakasuji, Y, Asanuma, A, Yao, X, Iwata, S, Shigeta, Y, Nango, E, Ueno, T.
登録日2023-11-02
公開日2024-07-31
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Real-time observation of a metal complex-driven reaction intermediate using a porous protein crystal and serial femtosecond crystallography.
Nat Commun, 15, 2024
8WZF
DownloadVisualize
BU of 8wzf by Molmil
Dark state SFX structure of hen egg white lysozyme microcrystals immobilized with a Mn carbonyl complex at RT.
分子名称: CHLORIDE ION, Lysozyme C, SODIUM ION, ...
著者Maity, B, Shoji, M, Luo, F, Nakane, T, Abe, S, Owada, S, Kang, J, Tono, K, Tanaka, R, Thuc, T.T, Kojima, M, Hishikawa, Y, Tanaka, J, Tian, J, Noya, H, Nakasuji, Y, Asanuma, A, Yao, X, Iwata, S, Shigeta, Y, Nango, E, Ueno, T.
登録日2023-11-01
公開日2024-07-31
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Real-time observation of a metal complex-driven reaction intermediate using a porous protein crystal and serial femtosecond crystallography.
Nat Commun, 15, 2024
8WZG
DownloadVisualize
BU of 8wzg by Molmil
SFX structure of an Mn-carbonyl complex immobilized in hen egg white lysozyme microcrystals, 10 ns after photoexcitation at RT.
分子名称: CHLORIDE ION, Lysozyme C, SODIUM ION, ...
著者Maity, B, Shoji, M, Luo, F, Nakane, T, Abe, S, Owada, S, Kang, J, Tono, K, Tanaka, R, Thuc, T.T, Kojima, M, Hishikawa, Y, Tanaka, J, Tian, J, Noya, H, Nakasuji, Y, Asanuma, A, Yao, X, Iwata, S, Shigeta, Y, Nango, E, Ueno, T.
登録日2023-11-01
公開日2024-07-31
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Real-time observation of a metal complex-driven reaction intermediate using a porous protein crystal and serial femtosecond crystallography.
Nat Commun, 15, 2024
8WZR
DownloadVisualize
BU of 8wzr by Molmil
SFX structure of an Mn-carbonyl complex immobilized in hen egg white lysozyme microcrystals, 100 ns after photoexcitation at RT.
分子名称: CHLORIDE ION, Lysozyme C, SODIUM ION, ...
著者Maity, B, Shoji, M, Luo, F, Nakane, T, Abe, S, Owada, S, Kang, J, Tono, K, Tanaka, R, Thuc, T.T, Kojima, M, Hishikawa, Y, Tanaka, J, Tian, J, Noya, H, Nakasuji, Y, Asanuma, A, Yao, X, Iwata, S, Shigeta, Y, Nango, E, Ueno, T.
登録日2023-11-02
公開日2024-09-04
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Real-time observation of a metal complex-driven reaction intermediate using a porous protein crystal and serial femtosecond crystallography.
Nat Commun, 15, 2024
6KMF
DownloadVisualize
BU of 6kmf by Molmil
FimA type V pilus from P.gingivalis
分子名称: Major fimbrium subunit FimA type-1
著者Shibata, S, Shoji, M, Matsunami, H, Matthews, M, Imada, K, Nakayama, K, Wolf, M.
登録日2019-07-31
公開日2020-04-15
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Structure of polymerized type V pilin reveals assembly mechanism involving protease-mediated strand exchange.
Nat Microbiol, 5, 2020
6L9C
DownloadVisualize
BU of 6l9c by Molmil
Neutron structure of copper amine oxidase from Arthrobacter glibiformis at pD 7.4
分子名称: COPPER (II) ION, Phenylethylamine oxidase, SODIUM ION
著者Murakawa, T, Kurihara, K, Shoji, M, Shibazaki, C, Sunami, T, Tamada, T, Yano, N, Yamada, T, Kusaka, K, Suzuki, M, Shigeta, Y, Kuroki, R, Hayashi, H, Yano, Y, Tanizawa, K, Adachi, M, Okajima, T.
登録日2019-11-08
公開日2020-04-29
最終更新日2023-11-22
実験手法NEUTRON DIFFRACTION (1.14 Å), X-RAY DIFFRACTION
主引用文献Neutron crystallography of copper amine oxidase reveals keto/enolate interconversion of the quinone cofactor and unusual proton sharing.
Proc.Natl.Acad.Sci.USA, 117, 2020
6JZJ
DownloadVisualize
BU of 6jzj by Molmil
Structure of FimA type-2 (FimA2) prepilin of the type V major fimbrium
分子名称: Major fimbrium subunit FimA type-2, SULFATE ION
著者Okada, K, Shoji, M, Nakayam, K, Imada, K.
登録日2019-05-02
公開日2020-04-15
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure of polymerized type V pilin reveals assembly mechanism involving protease-mediated strand exchange.
Nat Microbiol, 5, 2020
6KJK
DownloadVisualize
BU of 6kjk by Molmil
Structure of the N-terminal domain of PorA
分子名称: N-terminal domain of PorA (28-171)
著者Handa, Y, Sato, K, Shoji, M, Nakayama, K, Imada, K.
登録日2019-07-22
公開日2020-07-22
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献PorA, a conserved C-terminal domain-containing protein, impacts the PorXY-SigP signaling of the type IX secretion system.
Sci Rep, 10, 2020
6JZK
DownloadVisualize
BU of 6jzk by Molmil
Structure of FimA type-1 (FimA1) prepilin of the type V major fimbrium
分子名称: GLYCEROL, Major fimbrium subunit FimA type-1, S,R MESO-TARTARIC ACID, ...
著者Okada, K, Shoji, M, Nakayam, K, Imada, K.
登録日2019-05-02
公開日2020-04-15
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of polymerized type V pilin reveals assembly mechanism involving protease-mediated strand exchange.
Nat Microbiol, 5, 2020
7WIS
DownloadVisualize
BU of 7wis by Molmil
Catalytic intermediate structure of N381A mutant of copper amine oxidase from Arthrobacter globiformis
分子名称: COPPER (II) ION, GLYCEROL, PHENYLACETALDEHYDE, ...
著者Murakawa, T, Okajima, T.
登録日2022-01-04
公開日2022-11-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Molecular mechanism of a large conformational change of the quinone cofactor in the semiquinone intermediate of bacterial copper amine oxidase.
Chem Sci, 13, 2022
7WIR
DownloadVisualize
BU of 7wir by Molmil
Holo form of N381A mutant of copper amine oxidase from Arthrobacter globiformis
分子名称: COPPER (II) ION, GLYCEROL, Phenylethylamine oxidase
著者Murakawa, T, Okajima, T.
登録日2022-01-04
公開日2022-11-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Molecular mechanism of a large conformational change of the quinone cofactor in the semiquinone intermediate of bacterial copper amine oxidase.
Chem Sci, 13, 2022
3LIU
DownloadVisualize
BU of 3liu by Molmil
Crystal structure of Putative cell adhesion protein (YP_001304840.1) from Parabacteroides distasonis ATCC 8503 at 2.05 A resolution
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, GLYCEROL, ...
著者Joint Center for Structural Genomics (JCSG)
登録日2010-01-25
公開日2010-02-09
最終更新日2023-02-01
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献A Distinct Type of Pilus from the Human Microbiome.
Cell, 165, 2016
5CAG
DownloadVisualize
BU of 5cag by Molmil
Crystal structure of a putative adhesin (BACOVA_02677) from Bacteroides ovatus ATCC 8483 at 3.00 A resolution (PSI Community Target, Nakayama)
分子名称: SULFATE ION, Uncharacterized protein
著者Joint Center for Structural Genomics (JCSG), Nakayama, K.
登録日2015-06-29
公開日2015-10-14
最終更新日2020-04-22
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献A Distinct Type of Pilus from the Human Microbiome.
Cell, 165, 2016
8J6G
DownloadVisualize
BU of 8j6g by Molmil
Neutron structure of copper amine oxidase from Arthrobacter globiformis anaerobically reduced by phenylethylamine at pD 9.0
分子名称: 2-PHENYLETHYLAMINE, COPPER (II) ION, Phenylethylamine oxidase, ...
著者Murakawa, T, Okajima, T.
登録日2023-04-25
公開日2023-09-20
実験手法NEUTRON DIFFRACTION (1.09 Å), X-RAY DIFFRACTION
主引用文献Neutron Crystallography of a Semiquinone Radical Intermediate of Copper Amine Oxidase Reveals a Substrate-Assisted Conformational Change of the Peptidyl Quinone Cofactor
Acs Catalysis, 2023
3PAY
DownloadVisualize
BU of 3pay by Molmil
Crystal structure of a putative adhesin (BACOVA_04077) from Bacteroides ovatus at 2.50 A resolution
分子名称: DI(HYDROXYETHYL)ETHER, putative adhesin
著者Joint Center for Structural Genomics (JCSG)
登録日2010-10-19
公開日2010-11-10
最終更新日2020-04-22
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献A Distinct Type of Pilus from the Human Microbiome.
Cell, 165, 2016
3R4R
DownloadVisualize
BU of 3r4r by Molmil
Crystal structure of a fimbrial assembly protein (BDI_3522) from Parabacteroides distasonis ATCC 8503 at 2.38 A resolution
分子名称: 1,2-ETHANEDIOL, SULFATE ION, hypothetical fimbrial assembly protein
著者Joint Center for Structural Genomics (JCSG)
登録日2011-03-17
公開日2011-03-30
最終更新日2023-02-01
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献A Distinct Type of Pilus from the Human Microbiome.
Cell, 165, 2016
4K4K
DownloadVisualize
BU of 4k4k by Molmil
Crystal structure of a putative cell adhesion protein (BACUNI_00621) from Bacteroides uniformis ATCC 8492 at 1.67 A resolution
分子名称: CHLORIDE ION, Putative cell adhesion protein
著者Joint Center for Structural Genomics (JCSG)
登録日2013-04-12
公開日2013-05-01
最終更新日2023-02-01
実験手法X-RAY DIFFRACTION (1.67 Å)
主引用文献A Distinct Type of Pilus from the Human Microbiome.
Cell, 165, 2016
4JG5
DownloadVisualize
BU of 4jg5 by Molmil
Crystal structure of a putative cell adhesion protein (BDI_3519) from Parabacteroides distasonis ATCC 8503 at 2.34 A resolution (PSI Community Target, Nakayama)
分子名称: Putative cell adhesion protein
著者Joint Center for Structural Genomics (JCSG)
登録日2013-02-28
公開日2013-03-20
最終更新日2023-02-01
実験手法X-RAY DIFFRACTION (2.34 Å)
主引用文献A Distinct Type of Pilus from the Human Microbiome.
Cell, 165, 2016
4JRF
DownloadVisualize
BU of 4jrf by Molmil
Crystal structure of a putative cell adhesion protein (BACOVA_01548) from Bacteroides ovatus ATCC 8483 at 1.98 A resolution (PSI Community Target, Nakayama)
分子名称: CALCIUM ION, CHLORIDE ION, SULFATE ION, ...
著者Joint Center for Structural Genomics (JCSG)
登録日2013-03-21
公開日2013-04-03
最終更新日2023-02-01
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献A Distinct Type of Pilus from the Human Microbiome.
Cell, 165, 2016
4EPS
DownloadVisualize
BU of 4eps by Molmil
Crystal structure of a fimbrial protein (BACOVA_04982) from Bacteroides ovatus ATCC 8483 at 1.85 A resolution
分子名称: CHLORIDE ION, GLYCEROL, SULFATE ION, ...
著者Joint Center for Structural Genomics (JCSG)
登録日2012-04-17
公開日2012-06-13
最終更新日2023-02-01
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献A Distinct Type of Pilus from the Human Microbiome.
Cell, 165, 2016
4DGU
DownloadVisualize
BU of 4dgu by Molmil
Crystal structure of a putative cell adhesion protein (BT0320) from Bacteroides thetaiotaomicron VPI-5482 at 2.37 A resolution
分子名称: CHLORIDE ION, ZINC ION, putative cell adhesion protein
著者Joint Center for Structural Genomics (JCSG)
登録日2012-01-26
公開日2012-02-15
最終更新日2023-02-01
実験手法X-RAY DIFFRACTION (2.37 Å)
主引用文献A Distinct Type of Pilus from the Human Microbiome.
Cell, 165, 2016
4H40
DownloadVisualize
BU of 4h40 by Molmil
Crystal structure of a putative cell adhesion protein (BF2867) from Bacteroides fragilis NCTC 9343 at 2.57 A resolution
分子名称: CHLORIDE ION, putative cell adhesion protein
著者Joint Center for Structural Genomics (JCSG)
登録日2012-09-14
公開日2012-10-03
最終更新日2023-02-01
実験手法X-RAY DIFFRACTION (2.57 Å)
主引用文献A Distinct Type of Pilus from the Human Microbiome.
Cell, 165, 2016
4GPV
DownloadVisualize
BU of 4gpv by Molmil
Crystal structure of a putative cell adhesion protein (BACEGG_00536) from Bacteroides eggerthii DSM 20697 at 1.67 A resolution
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, putative cell adhesion protein
著者Joint Center for Structural Genomics (JCSG)
登録日2012-08-21
公開日2012-09-19
最終更新日2023-02-01
実験手法X-RAY DIFFRACTION (1.67 Å)
主引用文献A Distinct Type of Pilus from the Human Microbiome.
Cell, 165, 2016
4QDG
DownloadVisualize
BU of 4qdg by Molmil
Crystal structure of a putative adhesin (BT2657) from Bacteroides thetaiotaomicron VPI-5482 at 2.20 A resolution (PSI Community Target, Nakayama)
分子名称: 1,2-ETHANEDIOL, MAGNESIUM ION, Putative adhesin
著者Joint Center for Structural Genomics (JCSG)
登録日2014-05-13
公開日2014-06-11
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献A Distinct Type of Pilus from the Human Microbiome.
Cell, 165, 2016

 

12>

226707

件を2024-10-30に公開中

PDB statisticsPDBj update infoContact PDBjnumon