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8YIF
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BU of 8yif by Molmil
Crystal structure of GH13_30 alpha-glucosidase CmmB in complex with acarviosin
分子名称: Acarviosin, Alpha-glucosidase
著者Saburi, W, Tagami, T, Yu, J, Ose, T, Yao, M, Mori, H.
登録日2024-02-29
公開日2024-07-03
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Molecular mechanism for the substrate specificity of Arthrobacter globiformis M6 alpha-glucosidase CmmB, belonging to glycoside hydrolase family 13 subfamily 30
Food Biosci, 61, 2024
8YIE
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Crystal structure of GH13_30 alpha-glucosidase CmmB in complex with acarbose
分子名称: 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, Alpha-glucosidase
著者Saburi, W, Tagami, T, Yu, J, Ose, T, Yao, M, Mori, H.
登録日2024-02-29
公開日2024-07-03
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Molecular mechanism for the substrate specificity of Arthrobacter globiformis M6 alpha-glucosidase CmmB, belonging to glycoside hydrolase family 13 subfamily 30
Food Biosci, 61, 2024
8H25
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Lacticaseibacillus casei GH35 beta-galactosidase LBCZ_0230
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Beta-galactosidase, DI(HYDROXYETHYL)ETHER, ...
著者Saburi, W, Ota, T, Kato, K, Tagami, T, Yamashita, K, Yao, M, Mori, H.
登録日2022-10-04
公開日2023-08-16
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.295 Å)
主引用文献Function and Structure of Lacticaseibacillus casei GH35 beta-Galactosidase LBCZ_0230 with High Hydrolytic Activity to Lacto- N -biose I and Galacto- N -biose.
J Appl Glycosci (1999), 70, 2023
5X32
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Crystal structure of D-mannose isomerase
分子名称: N-acylglucosamine 2-epimerase, PHOSPHATE ION
著者Kato, K, Saburi, W, Yao, M.
登録日2017-02-03
公開日2018-02-07
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.586 Å)
主引用文献Biochemical and structural characterization of Marinomonas mediterranead-mannose isomerase Marme_2490 phylogenetically distant from known enzymes
Biochimie, 144, 2018
8JHH
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Glycoside hydrolase family 55 endo-beta-1,3-glucanase from Microdochium nivale
分子名称: GLYCEROL, MnLam55A
著者Ota, T, Saburi, W, Yamashita, K, Tagami, T, Yu, J, Komba, S, Jewell, L.E, Hsiang, T, Imai, R, Yao, M, Mori, H.
登録日2023-05-23
公開日2024-04-03
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Molecular mechanism for endo-type action of glycoside hydrolase family 55 endo-beta-1,3-glucanase on beta 1-3/1-6-glucan.
J.Biol.Chem., 299, 2023
2ZID
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Crystal structure of dextran glucosidase E236Q complex with isomaltotriose
分子名称: CALCIUM ION, Dextran glucosidase, alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose
著者Hondoh, H, Saburi, W, Mori, H, Okuyama, M, Nakada, T, Matsuura, Y, Kimura, A.
登録日2008-02-14
公開日2008-06-24
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Substrate recognition mechanism of alpha-1,6-glucosidic linkage hydrolyzing enzyme, dextran glucosidase from Streptococcus mutans.
J.Mol.Biol., 378, 2008
2ZIC
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Crystal structure of Streptococcus mutans dextran glucosidase
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, Dextran glucosidase, ...
著者Hondoh, H, Saburi, W, Mori, H, Okuyama, M, Nakada, T, Matsuura, Y, Kimura, A.
登録日2008-02-14
公開日2008-06-24
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Substrate recognition mechanism of alpha-1,6-glucosidic linkage hydrolyzing enzyme, dextran glucosidase from Streptococcus mutans.
J.Mol.Biol., 378, 2008
8IDS
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Crystal structure of Bacillus sp. AHU2216 GH13_31 Alpha-glucosidase E256Q/N258P in complex with maltotriose
分子名称: Alpha-glucosidase, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
著者Auiewiriyanukul, W, Saburi, W, Yu, J, Kato, K, Yao, M, Mori, H.
登録日2023-02-14
公開日2023-05-03
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Alteration of Substrate Specificity and Transglucosylation Activity of GH13_31 alpha-Glucosidase from Bacillus sp. AHU2216 through Site-Directed Mutagenesis of Asn258 on beta → alpha Loop 5.
Molecules, 28, 2023
8IBK
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Crystal structure of Bacillus sp. AHU2216 GH13_31 Alpha-glucosidase E256Q/N258G in complex with maltotriose
分子名称: Alpha-glucosidase, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
著者Auiewiriyanukul, W, Saburi, W, Yu, J, Kato, K, Yao, M, Mori, H.
登録日2023-02-10
公開日2023-05-03
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Alteration of Substrate Specificity and Transglucosylation Activity of GH13_31 alpha-Glucosidase from Bacillus sp. AHU2216 through Site-Directed Mutagenesis of Asn258 on beta → alpha Loop 5.
Molecules, 28, 2023
5ZCC
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Crystal structure of Alpha-glucosidase in complex with maltose
分子名称: Alpha-glucosidase, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
著者Kato, K, Saburi, W, Yao, M.
登録日2018-02-16
公開日2018-12-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.704 Å)
主引用文献Function and structure of GH13_31 alpha-glucosidase with high alpha-(1→4)-glucosidic linkage specificity and transglucosylation activity.
FEBS Lett., 592, 2018
5ZCE
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Crystal structure of Alpha-glucosidase in complex with maltotetraose
分子名称: Alpha-glucosidase, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
著者Kato, K, Saburi, W, Yao, M.
登録日2018-02-16
公開日2018-12-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.555 Å)
主引用文献Function and structure of GH13_31 alpha-glucosidase with high alpha-(1→4)-glucosidic linkage specificity and transglucosylation activity.
FEBS Lett., 592, 2018
5ZCD
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Crystal structure of Alpha-glucosidase in complex with maltotriose
分子名称: Alpha-glucosidase, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
著者Kato, K, Saburi, W, Yao, M.
登録日2018-02-16
公開日2018-12-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.707 Å)
主引用文献Function and structure of GH13_31 alpha-glucosidase with high alpha-(1→4)-glucosidic linkage specificity and transglucosylation activity.
FEBS Lett., 592, 2018
5ZCB
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BU of 5zcb by Molmil
Crystal structure of Alpha-glucosidase
分子名称: Alpha-glucosidase, CALCIUM ION
著者Kato, K, Saburi, W, Yao, M.
登録日2018-02-16
公開日2018-12-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Function and structure of GH13_31 alpha-glucosidase with high alpha-(1→4)-glucosidic linkage specificity and transglucosylation activity.
FEBS Lett., 592, 2018
5AYE
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BU of 5aye by Molmil
Crystal structure of Ruminococcus albus beta-(1,4)-mannooligosaccharide phosphorylase (RaMP2) in complexes with phosphate and beta-(1,4)-mannobiose
分子名称: Beta-1,4-mannooligosaccharide phosphorylase, PHOSPHATE ION, beta-D-mannopyranose-(1-4)-beta-D-mannopyranose
著者Ye, Y, Saburi, W, Kato, K, Yao, M.
登録日2015-08-13
公開日2016-03-23
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural insights into the difference in substrate recognition of two mannoside phosphorylases from two GH130 subfamilies.
Febs Lett., 590, 2016
5AY9
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Crystal structure of Ruminococcus albus 4-O-beta-D-mannosyl-D-glucose phosphorylase (RaMP1)
分子名称: 4-O-beta-D-mannosyl-D-glucose phosphorylase
著者Ye, Y, Saburi, W, Kato, K, Yao, M.
登録日2015-08-11
公開日2016-03-23
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural insights into the difference in substrate recognition of two mannoside phosphorylases from two GH130 subfamilies
Febs Lett., 590, 2016
5AYD
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Crystal structure of Ruminococcus albus beta-(1,4)-mannooligosaccharide phosphorylase (RaMP2) in complexes with phosphate
分子名称: Beta-1,4-mannooligosaccharide phosphorylase, PHOSPHATE ION
著者Ye, Y, Saburi, W, Kato, K, Yao, M.
登録日2015-08-13
公開日2016-03-23
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural insights into the difference in substrate recognition of two mannoside phosphorylases from two GH130 subfamilies.
Febs Lett., 590, 2016
5AYC
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Crystal structure of Ruminococcus albus 4-O-beta-D-mannosyl-D-glucose phosphorylase (RaMP1) in complexes with sulfate and 4-O-beta-D-mannosyl-D-glucose
分子名称: 4-O-beta-D-mannosyl-D-glucose phosphorylase, SULFATE ION, beta-D-mannopyranose-(1-4)-beta-D-glucopyranose
著者Ye, Y, Saburi, W, Kato, K, Yao, M.
登録日2015-08-13
公開日2016-03-23
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural insights into the difference in substrate recognition of two mannoside phosphorylases from two GH130 subfamilies.
Febs Lett., 590, 2016
7E9X
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Trehalase of Arabidopsis thaliana acid mutant -D380A
分子名称: GLYCEROL, Trehalase
著者Taguchi, Y, Saburi, W, Yu, J, Imai, R, Yao, M, Mori, H.
登録日2021-03-05
公開日2022-03-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献pH-dependent alteration of substrate specificity of plant trehalase and its molecular mechanism
To Be Published
7E9U
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Trehalase of Arabidopsis thaliana
分子名称: GLYCEROL, PHOSPHATE ION, SODIUM ION, ...
著者Taguchi, Y, Saburi, W, Yu, J, Imai, R, Yao, M, Mori, H.
登録日2021-03-05
公開日2022-03-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献pH-dependent alteration of substrate specificity of plant trehalase and its molecular mechanism
To Be Published
7EAW
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Trehalase of Arabidopsis thaliana acid mutant -D380A trehalose complex
分子名称: GLYCEROL, Trehalase, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose
著者Taguchi, Y, Saburi, W, Yu, J, Imai, R, Yao, M, Mori, H.
登録日2021-03-08
公開日2022-03-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献pH-dependent alteration of substrate specificity of plant trehalase and its molecular mechanism
To Be Published
7F3A
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Arabidopsis thaliana GH1 beta-glucosidase AtBGlu42
分子名称: Beta-glucosidase 42, GLYCEROL
著者Horikoshi, S, Saburi, W, Yu, J, Yao, M.
登録日2021-06-16
公開日2022-03-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Substrate specificity of glycoside hydrolase family 1 beta-glucosidase AtBGlu42 from Arabidopsis thaliana and its molecular mechanism.
Biosci.Biotechnol.Biochem., 86, 2022
8H1K
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Crystal structure of glucose-2-epimerase from Runella slithyformis Runsl_4512
分子名称: FORMIC ACID, GLYCEROL, N-acylglucosamine 2-epimerase
著者Wang, H, Sun, X.M, Saburi, W, Yu, J, Yao, M.
登録日2022-10-03
公開日2023-07-12
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural insights into the substrate specificity and activity of a novel mannose 2-epimerase from Runella slithyformis.
Acta Crystallogr D Struct Biol, 79, 2023
8H1L
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Crystal structure of glucose-2-epimerase in complex with D-Glucitol from Runella slithyformis Runsl_4512
分子名称: N-acylglucosamine 2-epimerase, sorbitol
著者Wang, H, Sun, X.M, Saburi, W, Yu, J, Yao, M.
登録日2022-10-03
公開日2023-07-12
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.33 Å)
主引用文献Structural insights into the substrate specificity and activity of a novel mannose 2-epimerase from Runella slithyformis.
Acta Crystallogr D Struct Biol, 79, 2023
8H1M
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Crystal structure of glucose-2-epimerase mutant_D254A from Runella slithyformis Runsl_4512
分子名称: FORMIC ACID, N-acylglucosamine 2-epimerase
著者Wang, H, Sun, X.M, Saburi, W, Yu, J, Yao, M.
登録日2022-10-03
公開日2023-07-12
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural insights into the substrate specificity and activity of a novel mannose 2-epimerase from Runella slithyformis.
Acta Crystallogr D Struct Biol, 79, 2023
8H1N
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Crystal structure of glucose-2-epimerase mutant_D254A in complex with D-Glucitol from Runella slithyformis Runsl_4512
分子名称: FORMIC ACID, N-acylglucosamine 2-epimerase, sorbitol
著者Wang, H, Sun, X.M, Saburi, W, Yu, J, Yao, M.
登録日2022-10-03
公開日2023-07-12
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.67 Å)
主引用文献Structural insights into the substrate specificity and activity of a novel mannose 2-epimerase from Runella slithyformis.
Acta Crystallogr D Struct Biol, 79, 2023

 

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