2DC0
 
 | | Crystal structure of amidase | | 分子名称: | probable amidase | | 著者 | Ohshima, T, Sakuraba, H, Ebihara, A, Kanagawa, M, Nakagawa, N, Kuroishi, C, Satoh, S, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2005-12-17 | | 公開日 | 2007-01-02 | | 最終更新日 | 2011-07-13 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Crystal structure of amidase
To be Published
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3KO8
 | | Crystal Structure of UDP-galactose 4-epimerase | | 分子名称: | NAD-dependent epimerase/dehydratase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, PHOSPHATE ION | | 著者 | Sakuraba, H, Kawai, T, Yoneda, K, Ohshima, T. | | 登録日 | 2009-11-13 | | 公開日 | 2010-11-17 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | Crystal structure of UDP-galactose 4-epimerase from the hyperthermophilic archaeon Pyrobaculum calidifontis
Arch.Biochem.Biophys., 512, 2011
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3ICP
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3WYB
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3WYC
 | | Structure of a meso-diaminopimelate dehydrogenase in complex with NADP | | 分子名称: | 2-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-ETHANESULFONIC ACID, Meso-diaminopimelate D-dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | | 著者 | Sakuraba, H, Akita, H, Ohshima, T. | | 登録日 | 2014-08-25 | | 公開日 | 2015-05-06 | | 最終更新日 | 2024-03-20 | | 実験手法 | X-RAY DIFFRACTION (2.07 Å) | | 主引用文献 | Structural insight into the thermostable NADP(+)-dependent meso-diaminopimelate dehydrogenase from Ureibacillus thermosphaericus
Acta Crystallogr.,Sect.D, 71, 2015
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3WIC
 | | Structure of a substrate/cofactor-unbound glucose dehydrogenase | | 分子名称: | Glucose 1-dehydrogenase, PENTAETHYLENE GLYCOL, S-1,2-PROPANEDIOL, ... | | 著者 | Sakuraba, H, Kanoh, Y, Yoneda, K, Ohshima, T. | | 登録日 | 2013-09-10 | | 公開日 | 2014-05-14 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | | 主引用文献 | Structural insight into glucose dehydrogenase from the thermoacidophilic archaeon Thermoplasma volcanium.
Acta Crystallogr.,Sect.D, 70, 2014
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8J1C
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8J1G
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8HYE
 | | Structure of amino acid dehydrogenase-2752 with ligand | | 分子名称: | 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Alanine dehydrogenase, ... | | 著者 | Sakuraba, H, Ohshima, T. | | 登録日 | 2023-01-06 | | 公開日 | 2023-04-05 | | 最終更新日 | 2024-05-29 | | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | | 主引用文献 | Two different alanine dehydrogenases from Geobacillus kaustophilus: Their biochemical characteristics and differential expression in vegetative cells and spores.
Biochim Biophys Acta Proteins Proteom, 1871, 2023
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8HYH
 | | Structure of amino acid dehydrogenase3448 | | 分子名称: | 1,2-ETHANEDIOL, Alanine dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... | | 著者 | Sakuraba, H, Ohshima, T. | | 登録日 | 2023-01-06 | | 公開日 | 2023-04-05 | | 最終更新日 | 2023-11-15 | | 実験手法 | X-RAY DIFFRACTION (2.39 Å) | | 主引用文献 | Two different alanine dehydrogenases from Geobacillus kaustophilus: Their biochemical characteristics and differential expression in vegetative cells and spores.
Biochim Biophys Acta Proteins Proteom, 1871, 2023
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7VNO
 | | Structure of aminotransferase | | 分子名称: | 1,2-ETHANEDIOL, 454aa long hypothetical 4-aminobutyrate aminotransferase, GLYCEROL, ... | | 著者 | Sakuraba, H, Ohshida, T, Ohshima, T. | | 登録日 | 2021-10-11 | | 公開日 | 2022-03-30 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | Crystal structure of a novel type of ornithine delta-aminotransferase from the hyperthermophilic archaeon Pyrococcus horikoshii.
Int.J.Biol.Macromol., 208, 2022
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7VO1
 | | Structure of aminotransferase-substrate complex | | 分子名称: | 454aa long hypothetical 4-aminobutyrate aminotransferase, N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-glutamic acid | | 著者 | Sakuraba, H, Ohshida, T, Ohshima, T. | | 登録日 | 2021-10-12 | | 公開日 | 2022-03-30 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (2.99 Å) | | 主引用文献 | Crystal structure of a novel type of ornithine delta-aminotransferase from the hyperthermophilic archaeon Pyrococcus horikoshii.
Int.J.Biol.Macromol., 208, 2022
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7VNT
 | | Structure of aminotransferase-substrate complex | | 分子名称: | 1,2-ETHANEDIOL, 454aa long hypothetical 4-aminobutyrate aminotransferase, GLYCEROL, ... | | 著者 | Sakuraba, H, Ohshida, T, Ohshima, T. | | 登録日 | 2021-10-12 | | 公開日 | 2022-03-30 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (1.92 Å) | | 主引用文献 | Crystal structure of a novel type of ornithine delta-aminotransferase from the hyperthermophilic archaeon Pyrococcus horikoshii.
Int.J.Biol.Macromol., 208, 2022
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5B1Y
 | | Crystal structure of NADPH bound carbonyl reductase from Aeropyrum pernix | | 分子名称: | 3-oxoacyl-[acyl-carrier-protein] reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | | 著者 | Yoneda, K, Sakuraba, H, Fukuda, Y, Araki, T, Ohshima, T. | | 登録日 | 2015-12-22 | | 公開日 | 2016-06-15 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (2.09 Å) | | 主引用文献 | Catalytic properties and crystal structure of thermostable NAD(P)H-dependent carbonyl reductase from the hyperthermophilic archaeon Aeropyrum pernix K1.
Enzyme.Microb.Technol., 91, 2016
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5GZ6
 | | Structure of D-amino acid dehydrogenase in complex with NADPH and 2-keto-6-aminocapronic acid | | 分子名称: | 6-azanyl-2-oxidanylidene-hexanoic acid, ACETATE ION, Meso-diaminopimelate D-dehydrogenase, ... | | 著者 | Sakuraba, H, Seto, T, Hayashi, J, Akita, H, Yoneda, K, Ohshima, T. | | 登録日 | 2016-09-26 | | 公開日 | 2017-04-12 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.74 Å) | | 主引用文献 | Structure-Based Engineering of an Artificially Generated NADP+-Dependent d-Amino Acid Dehydrogenase
Appl. Environ. Microbiol., 83, 2017
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5B37
 | | Crystal structure of L-tryptophan dehydrogenase from Nostoc punctiforme | | 分子名称: | Tryptophan dehydrogenase | | 著者 | Wakamatsu, T, Sakuraba, H, Kitamura, M, Hakumai, Y, Ohnishi, K, Ashiuchi, M, Ohshima, T. | | 登録日 | 2016-02-11 | | 公開日 | 2016-11-23 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (3.4 Å) | | 主引用文献 | Structural Insights into l-Tryptophan Dehydrogenase from a Photoautotrophic Cyanobacterium, Nostoc punctiforme.
Appl. Environ. Microbiol., 83, 2017
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5GZ3
 | | Structure of D-amino acid dehydrogenase in complex with NADP | | 分子名称: | 1,2-ETHANEDIOL, Meso-diaminopimelate D-dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | | 著者 | Sakuraba, H, Seto, T, Hayashi, J, Akita, H, Yoneda, K, Ohshima, T. | | 登録日 | 2016-09-26 | | 公開日 | 2017-04-12 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.59 Å) | | 主引用文献 | Structure-Based Engineering of an Artificially Generated NADP+-Dependent d-Amino Acid Dehydrogenase
Appl. Environ. Microbiol., 83, 2017
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5GZ1
 | | Structure of substrate/cofactor-free D-amino acid dehydrogenase | | 分子名称: | Meso-diaminopimelate D-dehydrogenase | | 著者 | Sakuraba, H, Seto, T, Hayashi, J, Akita, H, Yoneda, K, Ohshima, T. | | 登録日 | 2016-09-26 | | 公開日 | 2017-04-12 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.78 Å) | | 主引用文献 | Structure-Based Engineering of an Artificially Generated NADP+-Dependent d-Amino Acid Dehydrogenase
Appl. Environ. Microbiol., 83, 2017
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1GE9
 | | SOLUTION STRUCTURE OF THE RIBOSOME RECYCLING FACTOR | | 分子名称: | RIBOSOME RECYCLING FACTOR | | 著者 | Yoshida, T, Uchiyama, S, Nakano, H, Kashimori, H, Kijima, H, Ohshima, T, Saihara, Y, Ishino, T, Shimahara, T, Yoshida, T, Yokose, K, Ohkubo, T, Kaji, A, Kobayashi, Y. | | 登録日 | 2000-10-19 | | 公開日 | 2001-05-16 | | 最終更新日 | 2023-12-27 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Solution structure of the ribosome recycling factor from Aquifex aeolicus.
Biochemistry, 40, 2001
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8HMO
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4YSV
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4YSN
 | | Structure of aminoacid racemase in complex with PLP | | 分子名称: | PYRIDOXAL-5'-PHOSPHATE, Putative 4-aminobutyrate aminotransferase | | 著者 | Sakuraba, H, Mutaguchi, Y, Hayashi, J, Ohshima, T. | | 登録日 | 2015-03-17 | | 公開日 | 2016-04-20 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.94 Å) | | 主引用文献 | Crystal structure of the novel amino-acid racemase isoleucine 2-epimerase from Lactobacillus buchneri.
Acta Crystallogr D Struct Biol, 73, 2017
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1L2L
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6K3D
 | | Structure of multicopper oxidase mutant | | 分子名称: | COPPER (II) ION, CU-O-CU LINKAGE, Multicopper oxidase | | 著者 | Sakuraba, H, Ohshida, T, Satomura, T, Yoneda, K, Ohshima, T. | | 登録日 | 2019-05-17 | | 公開日 | 2020-05-20 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (1.919 Å) | | 主引用文献 | Activity enhancement of multicopper oxidase from a hyperthermophile via directed evolution, and its application as the element of a high performance biocathode.
J.Biotechnol., 325, 2021
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6JYG
 | | Crystal Structure of L-threonine dehydrogenase from Phytophthora infestans | | 分子名称: | 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, CITRATE ANION, L-threonine 3-dehydrogenase, ... | | 著者 | Yoneda, K, Sakuraba, H, Ohshima, T. | | 登録日 | 2019-04-26 | | 公開日 | 2020-04-01 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (2.31 Å) | | 主引用文献 | Catalytic properties and crystal structure of UDP-galactose 4-epimerase-like l-threonine 3-dehydrogenase from Phytophthora infestans.
Enzyme.Microb.Technol., 140, 2020
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