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2ZIB
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Crystal structure analysis of calcium-independent type II antifreeze protein
分子名称: SULFATE ION, Type II antifreeze protein
著者Nishimiya, Y, Sato, R, Kondo, H, Noro, N, Sugimoto, H, Suzuki, M, Tsuda, S.
登録日2008-02-14
公開日2008-08-19
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.34 Å)
主引用文献Crystal structure and mutational analysis of Ca2+-independent type II antifreeze protein from longsnout poacher, Brachyopsis rostratus
J.Mol.Biol., 382, 2008
3WP9
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Crystal structure of antifreeze protein from an Antarctic sea ice bacterium Colwellia sp.
分子名称: Ice-binding protein
著者Hanada, Y, Nishimiya, Y, Miura, A, Tsuda, S, Kondo, H.
登録日2014-01-10
公開日2014-07-02
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Hyperactive antifreeze protein from an Antarctic sea ice bacterium Colwellia sp. has a compound ice-binding site without repetitive sequences.
Febs J., 281, 2014
6JK5
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Ca2+-dependent type II antifreeze protein (Ca2+-free form)
分子名称: SULFATE ION, Type II antifreeze protein
著者Arai, T, Tsuda, S, Kondo, H, Nishimiya, Y.
登録日2019-02-27
公開日2019-06-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Calcium-Binding Generates the Semi-Clathrate Waters on a Type II Antifreeze Protein to Adsorb onto an Ice Crystal Surface.
Biomolecules, 9, 2019
6JK4
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Ca2+-dependent type II antifreeze protein
分子名称: CALCIUM ION, Type II antifreeze protein
著者Arai, T, Tsuda, S, Kondo, H, Nishimiya, Y.
登録日2019-02-27
公開日2019-06-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.06 Å)
主引用文献Calcium-Binding Generates the Semi-Clathrate Waters on a Type II Antifreeze Protein to Adsorb onto an Ice Crystal Surface.
Biomolecules, 9, 2019
2LX3
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1H,13C,15N assignments for an isoform of the type III antifreeze protein from notched-fin eelpout
分子名称: Type III antifreeze protein nfeAFP11
著者Kumeta, H, Ogura, K, Nishimiya, Y, Miura, A, Inagaki, F, Tsuda, S.
登録日2012-08-12
公開日2013-07-24
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献NMR structure note: a defective isoform and its activity-improved variant of a type III antifreeze protein from Zoarces elongates Kner
J.Biomol.Nmr, 55, 2013
2LX2
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1H,13C,15N assignments for an isoform of the type III antifreeze protein from notched-fin eelpout
分子名称: Type III antifreeze protein nfeAFP11
著者Kumeta, H, Ogura, K, Nishimiya, Y, Miura, A, Inagaki, F, Tsuda, S.
登録日2012-08-12
公開日2013-07-24
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献NMR structure note: a defective isoform and its activity-improved variant of a type III antifreeze protein from Zoarces elongates Kner
J.Biomol.Nmr, 55, 2013
1UA6
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Crystal structure of HYHEL-10 FV MUTANT SFSF complexed with HEN EGG WHITE LYSOZYME complex
分子名称: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region
著者Kumagai, I, Nishimiya, Y, Kondo, H, Tsumoto, K.
登録日2003-02-28
公開日2004-03-09
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural consequences of target epitope-directed functional alteration of an antibody. The case of anti-hen lysozyme antibody, HyHEL-10
J.Biol.Chem., 278, 2003
1UAC
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Crystal Structure of HYHEL-10 FV MUTANT SFSF Complexed with TURKEY WHITE LYSOZYME
分子名称: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region
著者Kumagai, I, Nishimiya, Y, Kondo, H, Tsumoto, K.
登録日2003-03-08
公開日2004-03-23
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural consequences of target epitope-directed functional alteration of an antibody. The case of anti-hen lysozyme antibody, HyHEL-10
J.BIOL.CHEM., 278, 2003
1IC4
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CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT(HD32A)-HEN LYSOZYME COMPLEX
分子名称: IGG1 FAB CHAIN H, LYSOZYME BINDING IG KAPPA CHAIN, LYSOZYME C
著者Shiroishi, M, Yokota, A, Tsumoto, K, Kondo, H, Nishimiya, Y, Horii, K, Matsushima, M, Ogasahara, K, Yutani, K, Kumagai, I.
登録日2001-03-30
公開日2001-07-18
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural evidence for entropic contribution of salt bridge formation to a protein antigen-antibody interaction: the case of hen lysozyme-HyHEL-10 Fv complex.
J.Biol.Chem., 276, 2001
1IC7
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CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT(HD32A99A)-HEN LYSOZYME COMPLEX
分子名称: IGG1 FAB CHAIN H, LYSOZYME BINDING IG KAPPA CHAIN, LYSOZYME C
著者Shiroishi, M, Yokota, A, Tsumoto, K, Kondo, H, Nishimiya, Y, Horii, K, Matsushima, M, Ogasahara, K, Yutani, K, Kumagai, I.
登録日2001-03-30
公開日2001-07-18
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural evidence for entropic contribution of salt bridge formation to a protein antigen-antibody interaction: the case of hen lysozyme-HyHEL-10 Fv complex.
J.Biol.Chem., 276, 2001
1IC5
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CRYSTAL STRUCTURE OF HYHEL-10 FV MUTANT(HD99A)-HEN LYSOZYME COMPLEX
分子名称: IGG1 FAB CHAIN H, LYSOZYME BINDING IG KAPPA CHAIN, LYSOZYME C
著者Shiroishi, M, Yokota, A, Tsumoto, K, Kondo, H, Nishimiya, Y, Horii, K, Matsushima, M, Ogasahara, K, Yutani, K, Kumagai, I.
登録日2001-03-30
公開日2001-07-18
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural evidence for entropic contribution of salt bridge formation to a protein antigen-antibody interaction: the case of hen lysozyme-HyHEL-10 Fv complex.
J.Biol.Chem., 276, 2001
2D7T
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Crystal structure of human anti polyhydroxybutyrate antibody Fv
分子名称: anti polyhydroxybutyrate antibody Fv, heavy chain, light chain
著者Watanabe, H.
登録日2005-11-29
公開日2006-12-12
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献A human antibody fragment with high affinity for the biodegradable polymer film
To be Published
5XQN
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Crystal structure of Notched-fin eelpout type III antifreeze protein (NFE6, AFP), C2221 form.
分子名称: Ice-structuring protein, SULFATE ION
著者Adachi, M, Kondo, H, Tsuda, S.
登録日2017-06-07
公開日2018-05-16
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.19 Å)
主引用文献Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQR
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Crystal structure of Notched-fin eelpout type III antifreeze protein A20V mutant (NFE6, AFP), C2221 form
分子名称: ACETATE ION, Ice-structuring protein
著者Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S.
登録日2017-06-07
公開日2018-05-16
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQP
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Crystal structure of Notched-fin eelpout type III antifreeze protein (NFE6, AFP), P212121 form
分子名称: Ice-structuring protein, SULFATE ION
著者Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S.
登録日2017-06-07
公開日2018-05-16
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQU
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Crystal structure of Notched-fin eelpout type III antifreeze protein A20I mutant (NFE6, AFP), P212121 form
分子名称: Ice-structuring protein
著者Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S.
登録日2017-06-07
公開日2018-05-16
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XQV
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Crystal structure of Notched-fin eelpout type III antifreeze protein A20L mutant (NFE6, AFP), P21 form
分子名称: Ice-structuring protein
著者Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S.
登録日2017-06-07
公開日2018-05-16
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (0.97 Å)
主引用文献Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5XR0
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Crystal structure of Notched-fin eelpout type III antifreeze protein A20T mutant (NFE6, AFP), P21 form
分子名称: Ice-structuring protein
著者Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S.
登録日2017-06-07
公開日2018-05-16
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018

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